Clone Sequence Records
BO12203.3prime Sequence
812 bp (714 high quality bases) assembled on 2006-04-20
> BO12203.3prime
ATGGTCTAGAAAGCTTGCTCTAACTACAACATCGGGCGAGTCCTCGCTGA
TCAGACGCTCCCTGTGCGAGCTTTCCATGGTACCACTCTCCAGTCTTATG
CCAGAATCGCGATTATAATCCAGTAGGCGCACTCCCACACGCTCGTTGCC
CGATGAACTAATGTTGTTCCGGAATAGTTGGGCCACCGGCGCTGTGGCTG
CCGACGAATTTACACCAAAGGCGTTCAGTGGTCGCAGGACACTGGCCTTC
GCCTTTGGATCGCTGTGACAAAAGTGCGTCACTTGTCGCGTCGGGTACCA
GCAGGTGCATATAAGACCGCCCGCCAAAAGGATGCCGGTTACTATCTGCC
CCAGCAGGACAATTAGCGGAACAAGCGCAATGTCTGCGGCAATTTCCTCT
GATACGCGTACGCGCTCCTCGCACCACATCATGGGTATCATGACCGTCGG
GACATTCTCATACAAGGTAATACCCGGAATTGGCTCCATGTAGTAGTTGG
CCTGAAAGCCACCACCCACGTCCATTGGCACGCCCGCATTGGGCTCCAGG
GCCATGAAGAACTCGTGCTTCTCGCGTTCTGGTCGCAAACCCTCGATGGC
CTCCAGATAGCTTGGATCCGCCATGTAAAAGTGCGGAAAGGACATGTAGA
CGGATGCGTTAAAGGAGCAGGGTCCGATATTGATCACACCGCTGGGCATA
CACTTTCCTCCGACACAATAGCAACGGGTATCCGGATATAGAGTGCCATT
GTCCACAGCGTGCCGGGTGCCACTGAATTTGTAGGCGGTCCCGCCGTGCA
CGGTCACAGTTT
BO12203.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7228-PA | 1770 | CG7228-RA | 974..1767 | 812..19 | 3920 | 99.7 | Minus |
| CG7228-PB | 1770 | CG7228-RB | 974..1767 | 812..19 | 3920 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:19:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pes-RF | 2532 | CG7228-RF | 972..1765 | 812..19 | 3940 | 99.7 | Minus |
| pes-RH | 2653 | CG7228-RH | 1093..1886 | 812..19 | 3940 | 99.7 | Minus |
| pes-RG | 2797 | CG7228-RG | 1237..2030 | 812..19 | 3940 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:18:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7987880..7988327 | 19..466 | 2240 | 100 | Plus |
| 2L | 23513712 | 2L | 7988393..7988738 | 467..812 | 1700 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-08 13:18:57 has no hits.
BO12203.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:09 Download gff for
BO12203.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7228-PB | 974..1770 | 15..812 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:08 Download gff for
BO12203.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7228-PB | 974..1770 | 15..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:44:54 Download gff for
BO12203.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pes-RC | 1355..2151 | 15..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:27:27 Download gff for
BO12203.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pes-RG | 1237..2033 | 15..812 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:27:27 Download gff for
BO12203.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7987877..7988327 | 15..466 | 99 | <- | Plus |
| 2L | 7988393..7988738 | 467..812 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:44:54 Download gff for
BO12203.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7987877..7988327 | 15..466 | 99 | <- | Plus |
| arm_2L | 7988393..7988738 | 467..812 | 99 | | Plus |
BO12203.5prime Sequence
824 bp (804 high quality bases) assembled on 2006-04-20
> BO12203.5prime
GAAGTTATCAGTCGACATGCTCAGTGCGCAACAAGAGATCGATCGAGGAA
GACGCCCTGCAAACAAAGAACATCAATTTACAGCACCGCCACCAAGACTC
AGGCGCAGCTCCACCAAGATGACATCACGGACGCGCCACTGTGCCCGACT
GGGGATCGTTCTCCTTGGGATCTGTTGCATCGCCAGCGGAATTTACCTCT
TCCGCAACTGGATCGATATGTTTACACGCATGCGCGGCCAGGAAATGGCC
CTGAGCCCCAATTCACGATCATTCGAGGGCTGGAAGGTGTCGCCGCTGCC
TTTAGACTTCGATATATATCTATTTAACTGGACCAATCCAGATGACTTCT
ATGTGGGATCGAACAAGAAGCCACACTTTGAGCAACTGGGACCCTATCGG
TTTCGAGAGAAACCCGATAAGGTGGACATCGAATGGCACAATCATAACGC
CTCCGTATCATTTCACAAAAAGTCCTGGTTCTACTTTGATGCTGCCGGCA
GCAACGGAAGTTTATGGGATAAAGTGACTACGGTCAACAGCGTAGCGCAC
TCTGCTGCTAGACGTGCGGCCGTCGACTGGTTTGCCAGAACTGGCGTTAA
CATTGCCAATAAATTATATAGACAGGGAGTGACCATTACGAAAACAGTTG
ATGAAATGCTTTTCAAGGGCTACGAGCATCCATTCATAAGCGTGGGCAAG
CTGTTGAGACCTCAGGATGTTCCCTACAAACGTATAGGCTACCATTACCC
ACGAAATGGCAGTTCCGAGTTCGATGGTGATATCAACATGTTTACAGGAG
CTGATGATATCGCCTAAATGGGTC
BO12203.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7228-PA | 1770 | CG7228-RA | 1..808 | 17..824 | 3990 | 99.7 | Plus |
| CG7228-PB | 1770 | CG7228-RB | 1..808 | 17..824 | 3990 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:31:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pes-RH | 2653 | CG7228-RH | 119..927 | 16..824 | 4015 | 99.8 | Plus |
| pes-RG | 2797 | CG7228-RG | 263..1071 | 16..824 | 4015 | 99.8 | Plus |
| pes-RD | 2973 | CG7228-RD | 112..920 | 16..824 | 4015 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:31:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7989243..7989553 | 550..240 | 1555 | 100 | Minus |
| 2L | 23513712 | 2L | 7988904..7989177 | 824..551 | 1340 | 99.3 | Minus |
| 2L | 23513712 | 2L | 7991357..7991583 | 242..16 | 1135 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:31:22 has no hits.
BO12203.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:10 Download gff for
BO12203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7228-PB | 1..808 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:10 Download gff for
BO12203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7228-PB | 1..808 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:49:56 Download gff for
BO12203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pes-RC | 379..1189 | 12..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:14:17 Download gff for
BO12203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pes-RD | 110..920 | 12..824 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:14:17 Download gff for
BO12203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7988904..7989177 | 551..824 | 99 | <- | Minus |
| 2L | 7989243..7989551 | 242..550 | 100 | <- | Minus |
| 2L | 7991358..7991585 | 12..241 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:49:56 Download gff for
BO12203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7988904..7989177 | 551..824 | 99 | <- | Minus |
| arm_2L | 7989243..7989551 | 242..550 | 100 | <- | Minus |
| arm_2L | 7991358..7991585 | 12..241 | 99 | | Minus |
BO12203.complete Sequence
1801 bp assembled on 2008-01-17
GenBank Submission: FJ632355
> BO12203.complete
GAAGTTATCAGTCGACATGCTCAGTGCGCAACAAGAGATCGATCGAGGAA
GACGCCCTGCAAACAAAGAACATCAATTTACAGCACCGCCACCAAGACTC
AGGCGCAGCTCCACCAAGATGACATCACGGACGCGCCACTGTGCCCGACT
GGGGATCGTTCTCCTTGGGATCTGTTGCATCGCCAGCGGAATTTACCTCT
TCCGCAACTGGATCGATATGTTTACACGCATGCGCGGCCAGGAAATGGCC
CTGAGCCCCAATTCACGATCATTCGAGGGCTGGAAGGTGTCGCCGCTGCC
TTTAGACTTCGATATATATCTATTTAACTGGACCAATCCAGATGACTTCT
ATGTGGGATCGAACAAGAAGCCACACTTTGAGCAACTGGGACCCTATCGG
TTTCGAGAGAAACCCGATAAGGTGGACATCGAATGGCACAATCATAACGC
CTCCGTATCATTTCACAAAAAGTCCTGGTTCTACTTTGATGCTGCCGGCA
GCAACGGAAGTTTATGGGATAAAGTGACTACGGTCAACAGCGTAGCGCAC
TCTGCTGCTAGACGTGCGGCCGTCGACTGGTTTGCCAGAACTGGCGTTAA
CATTGCCAATAAATTATATAGACAGGGAGTGACCATTACGAAAACAGTTG
ATGAAATGCTTTTCAAGGGCTACGAGCATCCATTCATAAGCGTGGGCAAG
CTGTTGAGACCTCAGGATGTTCCCTACAAACGTATAGGCTACCATTACCC
ACGAAATGGCAGTTCCGAGTTCGATGGTGATATCAACATGTTTACAGGAG
CTGATGATATCGCTAAAATGGGTCAGATTCATACGTGGAATAATTTGACG
CATACTGGAGCCTTTGAGGGCACCTGCGGGCAGGTGCACGGCTCGATGGG
CGAATTCTTTCCGCCCAATCTTGGCACCAAAGACACCGTCTACATGTACA
TGCCCAAGATGTGTCGTGCTATACCATTGGACTACGTGGAAACTGTGACC
GTGCACGGCGTGACCGCCTACAAATTCAGTGGCACCCGGCACGCTGTGGA
CAATGGCACTCTATATCCGGATACCCGTTGCTATTGTGTCGGAGGAAAGT
GTATGCCCAGCGGTGTGATCAATATCGGACCCTGCTCCTTTAACGCATCC
GTCTACATGTCCTTTCCGCACTTTTACATGGCGGATCCAAGCTATCTGGA
GGCCATCGAGGGTTTGCGACCAGAACGCGAGAAGCACGAGTTCTTCATGG
CCCTGGAGCCCAATGCGGGCGTGCCAATGGACGTGGGTGGTGGCTTTCAG
GCCAACTACTACATGGAGCCAATTCCGGGTATTACCTTGTATGAGAATGT
CCCGACGGTCATGATACCCATGATGTGGTGCGAGGAGCGCGTACGCGTAT
CAGAGGAAATTGCCGCAGACATTGCGCTTGTTCCGCTAATTGTCCTGCTG
GGGCAGATAGTAACCGGCATCCTTTTGGCGGGCGGTCTTATATGCACCTG
CTGGTACCCGACGCGACAAGTGACGCACTTTTGTCACAGCGATCCAAAGG
CGAAGGCCAGTGTCCTGCGACCACTGAACGCCTTTGGTGTAAATTCGTCG
GCAGCCACAGCGCCGGTGGCCCAACTATTCCGGAACAACATTAGTTCATC
GGGCAACGAGCGTGTGGGAGTGCGCCTACTGGATTATAATCGCGATTCTG
GCATAAGACTGGAGAGTGGTACCATGGAAAGCTCGCACAGGGAGCGTCTG
ATCAGCGAGGACTCGCCCGATGTTGTAGTTAGAGCAAGCTTTCTAGACCA
T
BO12203.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:37:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pes-RF | 1668 | CG7228-PF | 1..1665 | 119..1783 | 8310 | 99.9 | Plus |
| pes-RH | 1668 | CG7228-PH | 1..1665 | 119..1783 | 8310 | 99.9 | Plus |
| pes-RG | 1668 | CG7228-PG | 1..1665 | 119..1783 | 8310 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:37:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pes-RH | 2653 | CG7228-RH | 119..1886 | 16..1783 | 8825 | 99.9 | Plus |
| pes-RG | 2797 | CG7228-RG | 263..2030 | 16..1783 | 8825 | 99.9 | Plus |
| pes-RD | 2973 | CG7228-RD | 112..1879 | 16..1783 | 8825 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:37:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7988393..7989177 | 1335..551 | 3910 | 99.9 | Minus |
| 2L | 23513712 | 2L | 7987880..7988327 | 1783..1336 | 2240 | 100 | Minus |
| 2L | 23513712 | 2L | 7989243..7989553 | 550..240 | 1555 | 100 | Minus |
| 2L | 23513712 | 2L | 7991357..7991583 | 242..16 | 1135 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:37:39 has no hits.
BO12203.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:00 Download gff for
BO12203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pes-RB | 1..1770 | 17..1787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:45 Download gff for
BO12203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pes-RD | 111..1877 | 17..1785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:18 Download gff for
BO12203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pes-RC | 382..2148 | 17..1785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:00 Download gff for
BO12203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pes-RB | 108..1880 | 12..1787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:14 Download gff for
BO12203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pes-RD | 113..1879 | 17..1785 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:14 Download gff for
BO12203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7987878..7988327 | 1336..1785 | 99 | <- | Minus |
| 2L | 7988393..7989177 | 551..1335 | 99 | <- | Minus |
| 2L | 7989243..7989551 | 242..550 | 100 | <- | Minus |
| 2L | 7991358..7991582 | 17..241 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:18 Download gff for
BO12203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7987878..7988327 | 1336..1785 | 99 | <- | Minus |
| arm_2L | 7988393..7989177 | 551..1335 | 99 | <- | Minus |
| arm_2L | 7989243..7989551 | 242..550 | 100 | <- | Minus |
| arm_2L | 7991358..7991582 | 17..241 | 100 | | Minus |
BO12203.pep Sequence
Translation from 16 to 1801
> BO12203.pep
MLSAQQEIDRGRRPANKEHQFTAPPPRLRRSSTKMTSRTRHCARLGIVLL
GICCIASGIYLFRNWIDMFTRMRGQEMALSPNSRSFEGWKVSPLPLDFDI
YLFNWTNPDDFYVGSNKKPHFEQLGPYRFREKPDKVDIEWHNHNASVSFH
KKSWFYFDAAGSNGSLWDKVTTVNSVAHSAARRAAVDWFARTGVNIANKL
YRQGVTITKTVDEMLFKGYEHPFISVGKLLRPQDVPYKRIGYHYPRNGSS
EFDGDINMFTGADDIAKMGQIHTWNNLTHTGAFEGTCGQVHGSMGEFFPP
NLGTKDTVYMYMPKMCRAIPLDYVETVTVHGVTAYKFSGTRHAVDNGTLY
PDTRCYCVGGKCMPSGVINIGPCSFNASVYMSFPHFYMADPSYLEAIEGL
RPEREKHEFFMALEPNAGVPMDVGGGFQANYYMEPIPGITLYENVPTVMI
PMMWCEERVRVSEEIAADIALVPLIVLLGQIVTGILLAGGLICTCWYPTR
QVTHFCHSDPKAKASVLRPLNAFGVNSSAATAPVAQLFRNNISSSGNERV
GVRLLDYNRDSGIRLESGTMESSHRERLISEDSPDVVVRASFLDH
BO12203.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:26:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pes-PF | 555 | CG7228-PF | 1..555 | 35..589 | 3004 | 100 | Plus |
| pes-PH | 555 | CG7228-PH | 1..555 | 35..589 | 3004 | 100 | Plus |
| pes-PG | 555 | CG7228-PG | 1..555 | 35..589 | 3004 | 100 | Plus |
| pes-PD | 555 | CG7228-PD | 1..555 | 35..589 | 3004 | 100 | Plus |
| pes-PC | 555 | CG7228-PC | 1..555 | 35..589 | 3004 | 100 | Plus |
