Clone BO12204 Report

Search the DGRC for BO12204

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:122
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptGstE6-RA
Protein status:BO12204.pep: validated full length
Sequenced Size:700

Clone Sequence Records

BO12204.3prime Sequence

698 bp (697 high quality bases) assembled on 2006-04-20

> BO12204.3prime
ATGGTCTAGAAAGCTTGCTGCTTCGAATGTGAAATTGGTCTTCTTGAAAA
TGGCCACCAACTGGCGGACGCCCTTGCCATTGGCTTCCTCGTAGTATGGA
AGCTGTTCCAGCTTTTTGATCCAAGCACCGATCCTGGGATACTTAGTCGT
ATCCAAGGCCACGAAGGCCTCAAGGGAGGCCACCGATGAAACGAGACTGA
AATCCGCAATGGTCAGTTGATTGCCAGCAATGTAATCCTGTCCCTTGAGA
AAAGTTTCCACAAAATCGTAGATCTCGATAATGGCATCGTATCGCTCCTT
GGGTACTTTCGTCTGTCCCTGGAAGAGCACTGACTTCGATATGCTCCTTA
TGCCATTGGCAAAGACCACTCCGGATTCAAAGTGCAGCCGCTGATCCACA
ACAGCCCGCTTGAGAGGATCTTTCGGGTATAGGGCATCGGAATCGGCATA
TTTCGAGACCAAATAGGCAATAATGGCATGCGAATCCCAGATGTAGTGAC
CGTCATCCTCCAGGGTGGGCACCGTATGCTGTGGATTCTTCTCCAGATAT
TCCGGTGAAAGTTGGGCACGAGCCACAATGTCAACGTTTACATATTCGTA
GGTTAGGTTTAGAGCGGCCAAAGTAAGCTTAACAGCGCGAACTGGGGGAC
TGGGGTCCAAACCGTATAAAGTCAATTTCACCATGTCGACTGATAACT

BO12204.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG17530-PA 669 GstE6-RA 1..666 684..19 3330 100 Minus
CG17527-PA 669 GstE5-RA 145..254 540..431 175 86.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:55:49
Subject Length Description Subject Range Query Range Score Percent Strand
GstE6-RA 751 CG17530-RA 32..697 684..19 3330 100 Minus
GstE5-RA 734 CG17527-RA 28..685 686..29 800 75 Minus
GstE7-RA 765 CG17531-RA 169..642 547..74 495 74.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:55:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18406042..18406707 684..19 3330 100 Minus
2R 25286936 2R 18404632..18405289 686..29 800 74.8 Minus
2R 25286936 2R 18407092..18407565 547..74 480 73.4 Minus
2R 25286936 2R 18408003..18408344 541..200 390 74.3 Minus
Blast to na_te.dros performed on 2015-02-10 22:55:46 has no hits.

BO12204.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:11 Download gff for BO12204.3prime
Subject Subject Range Query Range Percent Splice Strand
GstE6-PA 1..669 16..684 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:11 Download gff for BO12204.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17530-PA 1..669 16..684 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:27:22 Download gff for BO12204.3prime
Subject Subject Range Query Range Percent Splice Strand
GstE6-RA 32..697 19..684 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:08:37 Download gff for BO12204.3prime
Subject Subject Range Query Range Percent Splice Strand
GstE6-RA 32..697 19..684 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:08:37 Download gff for BO12204.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18406042..18406707 19..684 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:27:22 Download gff for BO12204.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14293547..14294212 19..684 100   Minus

BO12204.5prime Sequence

698 bp (697 high quality bases) assembled on 2006-04-20

> BO12204.5prime
GAAGTTATCAGTCGACATGGTGAAATTGACTTTATACGGTTTGGACCCCA
GTCCCCCAGTTCGCGCTGTTAAGCTTACTTTGGCCGCTCTAAACCTAACC
TACGAATATGTAAACGTTGACATTGTGGCTCGTGCCCAACTTTCACCGGA
ATATCTGGAGAAGAATCCACAGCATACGGTGCCCACCCTGGAGGATGACG
GTCACTACATCTGGGATTCGCATGCCATTATTGCCTATTTGGTCTCGAAA
TATGCCGATTCCGATGCCCTATACCCGAAAGATCCTCTCAAGCGGGCTGT
TGTGGATCAGCGGCTGCACTTTGAATCCGGAGTGGTCTTTGCCAATGGCA
TAAGGAGCATATCGAAGTCAGTGCTCTTCCAGGGACAGACGAAAGTACCC
AAGGAGCGATACGATGCCATTATCGAGATCTACGATTTTGTGGAAACTTT
TCTCAAGGGACAGGATTACATTGCTGGCAATCAACTGACCATTGCGGATT
TCAGTCTCGTTTCATCGGTGGCCTCCCTTGAGGCCTTCGTGGCCTTGGAT
ACGACTAAGTATCCCAGGATCGGTGCTTGGATCAAAAAGCTGGAACAGCT
TCCATACTACGAGGAAGCCAATGGCAAGGGCGTCCGCCAGTTGGTGGCCA
TTTTCAAGAAGACCAATTTCACATTCGAAGCAGCAAGCTTTCTAGACC

BO12204.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG17530-PA 669 GstE6-RA 1..666 17..682 3330 100 Plus
CG17527-PA 669 GstE5-RA 145..254 161..270 175 86.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
GstE6-RA 751 CG17530-RA 32..697 17..682 3330 100 Plus
GstE5-RA 734 CG17527-RA 28..685 15..672 800 75 Plus
GstE7-RA 765 CG17531-RA 169..642 154..627 495 74.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:56:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18406042..18406707 17..682 3330 100 Plus
2R 25286936 2R 18404632..18405289 15..672 800 74.8 Plus
2R 25286936 2R 18407092..18407565 154..627 480 73.4 Plus
2R 25286936 2R 18408003..18408344 160..501 390 74.3 Plus
Blast to na_te.dros performed on 2015-02-11 10:56:33 has no hits.

BO12204.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:12 Download gff for BO12204.5prime
Subject Subject Range Query Range Percent Splice Strand
GstE6-PA 1..669 17..685 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:13 Download gff for BO12204.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17530-PA 1..669 17..685 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:05:20 Download gff for BO12204.5prime
Subject Subject Range Query Range Percent Splice Strand
GstE6-RA 32..697 17..682 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:30:23 Download gff for BO12204.5prime
Subject Subject Range Query Range Percent Splice Strand
GstE6-RA 32..697 17..682 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:30:23 Download gff for BO12204.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18406042..18406707 17..682 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:05:20 Download gff for BO12204.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14293547..14294212 17..682 100   Plus

BO12204.complete Sequence

700 bp assembled on 2006-10-11

GenBank Submission: FJ632356

> BO12204.complete
GAAGTTATCAGTCGACATGGTGAAATTGACTTTATACGGTTTGGACCCCA
GTCCCCCAGTTCGCGCTGTTAAGCTTACTTTGGCCGCTCTAAACCTAACC
TACGAATATGTAAACGTTGACATTGTGGCTCGTGCCCAACTTTCACCGGA
ATATCTGGAGAAGAATCCACAGCATACGGTGCCCACCCTGGAGGATGACG
GTCACTACATCTGGGATTCGCATGCCATTATTGCCTATTTGGTCTCGAAA
TATGCCGATTCCGATGCCCTATACCCGAAAGATCCTCTCAAGCGGGCTGT
TGTGGATCAGCGGCTGCACTTTGAATCCGGAGTGGTCTTTGCCAATGGCA
TAAGGAGCATATCGAAGTCAGTGCTCTTCCAGGGACAGACGAAAGTACCC
AAGGAGCGATACGATGCCATTATCGAGATCTACGATTTTGTGGAAACTTT
TCTCAAGGGACAGGATTACATTGCTGGCAATCAACTGACCATTGCGGATT
TCAGTCTCGTTTCATCGGTGGCCTCCCTTGAGGCCTTCGTGGCCTTGGAT
ACGACTAAGTATCCCAGGATCGGTGCTTGGATCAAAAAGCTGGAACAGCT
TCCATACTACGAGGAAGCCAATGGCAAGGGCGTCCGCCAGTTGGTGGCCA
TTTTCAAGAAGACCAATTTCACATTCGAAGCAGCAAGCTTTCTAGACCAT

BO12204.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:45:54
Subject Length Description Subject Range Query Range Score Percent Strand
GstE6-RA 669 CG17530-PA 1..666 17..682 3330 100 Plus
GstE5-RA 669 CG17527-PA 1..656 17..672 790 74.7 Plus
GstE7-RA 672 CG17531-PA 138..611 154..627 480 73.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:45:55
Subject Length Description Subject Range Query Range Score Percent Strand
GstE6-RA 751 CG17530-RA 32..697 17..682 3330 100 Plus
GstE5-RA 734 CG17527-RA 28..685 15..672 800 74.8 Plus
GstE7-RA 765 CG17531-RA 169..642 154..627 480 73.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:45:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18406042..18406707 17..682 3330 100 Plus
2R 25286936 2R 18404632..18405289 15..672 800 74.8 Plus
2R 25286936 2R 18407092..18407565 154..627 480 73.4 Plus
2R 25286936 2R 18408003..18408344 160..501 390 74.3 Plus
Blast to na_te.dros performed on 2014-11-27 12:45:53 has no hits.

BO12204.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:56 Download gff for BO12204.complete
Subject Subject Range Query Range Percent Splice Strand
GstE6-RA 1..669 17..685 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:30 Download gff for BO12204.complete
Subject Subject Range Query Range Percent Splice Strand
GstE6-RA 30..695 17..682 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:33:34 Download gff for BO12204.complete
Subject Subject Range Query Range Percent Splice Strand
GstE6-RA 32..697 17..684 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:56 Download gff for BO12204.complete
Subject Subject Range Query Range Percent Splice Strand
GstE6-RA 30..695 17..682 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:03 Download gff for BO12204.complete
Subject Subject Range Query Range Percent Splice Strand
GstE6-RA 32..697 17..684 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:03 Download gff for BO12204.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18406042..18406707 17..684 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:33:34 Download gff for BO12204.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14293547..14294212 17..684 99   Plus

BO12204.pep Sequence

Translation from 16 to 700

> BO12204.pep
MVKLTLYGLDPSPPVRAVKLTLAALNLTYEYVNVDIVARAQLSPEYLEKN
PQHTVPTLEDDGHYIWDSHAIIAYLVSKYADSDALYPKDPLKRAVVDQRL
HFESGVVFANGIRSISKSVLFQGQTKVPKERYDAIIEIYDFVETFLKGQD
YIAGNQLTIADFSLVSSVASLEAFVALDTTKYPRIGAWIKKLEQLPYYEE
ANGKGVRQLVAIFKKTNFTFEAASFLDH

BO12204.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:12
Subject Length Description Subject Range Query Range Score Percent Strand
GstE6-PA 222 CG17530-PA 1..222 1..222 1134 100 Plus
GstE5-PA 222 CG17527-PA 1..220 1..220 884 75.5 Plus
GstE8-PB 222 CG17533-PB 1..220 1..220 831 70.5 Plus
GstE8-PA 222 CG17533-PA 1..220 1..220 831 70.5 Plus
GstE7-PA 223 CG17531-PA 1..220 1..220 826 70 Plus