Clone Sequence Records
BO12208.3prime Sequence
472 bp (430 high quality bases) assembled on 2006-04-20
> BO12208.3prime
ATGGTCTAGAAAGCTTGCTTGTCTGCAGAGAATCTCGTACGAGTTGATGC
GAATCTCCCGACCTCCGTACGGAATATAGAGGCAACGCTGGCTGGCCGAG
ATCAGACCCGGTGTCAAACTGCCCTGGTAGTGTCCTCGCCCATAGTACAG
CAGCTCTCCATTGCGAGCACGACCCGTGGTTACGGCGTTTGGTGGAATGC
TGTGGCCGCAATTCATCCATACATATCCGTAGCCAGTGAGCACCTCGTAG
CTGGGCTTCTGGAATTCGTATCCGCCGAAGCAAACGTAGGCGGTTCCCTT
GCTCGGCACCACCTTGGCAGGCAGCATTTCACCCTCGTGCATTGCCCTTC
CGGCGTAAATGGGAGTACGGTCGGAGTCGTGTCCGGCGATCACTGCGCCC
GGAGGAGTGTAACTGGGCGAGGCCGGTACCCAGACGTCGTGCTGCTGCTT
GATGAGCACCTCGTAGGTGTTG
BO12208.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3884-PB | 861 | CG3884-RB | 405..858 | 472..19 | 2270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:57:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG44250-RC | 1100 | CG44250-RC | 555..1008 | 472..19 | 2270 | 100 | Minus |
CG44250-RB | 1067 | CG44250-RB | 522..975 | 472..19 | 2270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:57:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12950496..12950949 | 19..472 | 2270 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 04:57:49 has no hits.
BO12208.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:16 Download gff for
BO12208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3884-PB | 405..861 | 15..472 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:18 Download gff for
BO12208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3884-PB | 405..861 | 15..472 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:10:16 Download gff for
BO12208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG44250-RB | 522..981 | 12..472 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:51:03 Download gff for
BO12208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG44250-RB | 522..981 | 12..472 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:51:03 Download gff for
BO12208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12950490..12950949 | 12..472 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:10:16 Download gff for
BO12208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8837995..8838454 | 12..472 | 99 | | Plus |
BO12208.5prime Sequence
853 bp (767 high quality bases) assembled on 2006-04-20
> BO12208.5prime
GAAGTTATCAGTCGACATGGACAACACCTGGGTGCACTCGTCTCCATACA
GCCCCCTGCCCCCATACGCGGTTATCGGTGGCCATGACTCGGACCGCACG
CCCATCTATGTGGGTCGATCCTTTCACGAAGGCGAGAATCTTCCCGCCAA
GGTCGTACCGAGCAAGGGATGCGCCTATGTGGCCTACGGTGGTGCGGAGC
ACACGAAGACGCACTACGAGGTGCTGGTGGGTCAGGGATTTGCCTGGGTG
CCCAGTTCCAGCGGTGGAGTGCCACCGAATGCGGTGAGGAGCGGAACGAC
GCGAACGGGCGAGCCGCTCTATGTGGGACGCGGACATCATGCCGGAAGCT
TGACTGTGGGCAAAGTTCATCCATCGCACGGCTGCCTATACATTCCATTT
GGCGGCCAGGAGGTGCGCATCAACACCTACGAGGTGCTCATCAAGCAGCA
GCACGACGTCTGGGTACCGGCCTCGCCCAGTTACACTCCTCCGGGCGCAG
TGATCGCCGGACACGACTCCGACCGTACTCCCATTTACGCCGGAAGGGCA
ATGCACGAGGGTGAAATGCTGCCTGCCAAGGTGGTGCCGAGCAAGGGAAC
CGCCTACGTTTGCTTCGGCGGATACGAATTCCAGAAGCCCAGCTACGAGG
TGCTCACTGGCTACGGATATGTATGGATGAATTGCGGCCACAGCATTCCA
CCAAACGCCGTAACCACGGGTCGTGCTCGCAATGGAGAGCTGCTGTACTA
TGGGCGAGGACACTACCAGGGCAGTTTGACACCGGGTCTGATCTCGGCCA
GCCAGCGTTGCCTCTATATTCCGTACGGAGGTCGGGAGATTCGCATCAAC
TCG
BO12208.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3884-PB | 861 | CG3884-RB | 1..837 | 17..853 | 4185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:32:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG44250-RB | 1067 | CG44250-RB | 118..954 | 17..853 | 4185 | 100 | Plus |
CG44250-RC | 1100 | CG44250-RC | 154..987 | 20..853 | 4170 | 100 | Plus |
CG32633-RB | 956 | CG32633-RB | 794..864 | 347..417 | 190 | 84.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:32:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12950517..12951350 | 853..20 | 4170 | 100 | Minus |
X | 23542271 | X | 13562712..13562782 | 347..417 | 190 | 84.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:32:43 has no hits.
BO12208.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:17 Download gff for
BO12208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3884-PB | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:20 Download gff for
BO12208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3884-PB | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:50:12 Download gff for
BO12208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG44250-RB | 118..954 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:59 Download gff for
BO12208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG44250-RB | 118..954 | 17..853 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:59 Download gff for
BO12208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12950517..12951352 | 16..853 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:50:12 Download gff for
BO12208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8838022..8838857 | 16..853 | 99 | | Minus |
BO12208.complete Sequence
892 bp assembled on 2006-10-11
GenBank Submission: FJ632357
> BO12208.complete
GAAGTTATCAGTCGACATGGACAACACCTGGGTGCACTCGTCTCCATACA
GCCCCCTGCCCCCATACGCGGTTATCGGTGGCCATGACTCGGACCGCACG
CCCATCTATGTGGGTCGATCCTTTCACGAAGGCGAGAATCTTCCCGCCAA
GGTCGTACCGAGCAAGGGATGCGCCTATGTGGCCTACGGTGGTGCGGAGC
ACACGAAGACGCACTACGAGGTGCTGGTGGGTCAGGGATTTGCCTGGGTG
CCCAGTTCCAGCGGTGGAGTGCCACCGAATGCGGTGAGGAGCGGAACGAC
GCGAACGGGCGAGCCGCTCTATGTGGGACGCGGACATCATGCCGGAAGCT
TGACTGTGGGCAAAGTTCATCCATCGCACGGCTGCCTATACATTCCATTT
GGCGGCCAGGAGGTGCGCATCAACACCTACGAGGTGCTCATCAAGCAGCA
GCACGACGTCTGGGTACCGGCCTCGCCCAGTTACACTCCTCCGGGCGCAG
TGATCGCCGGACACGACTCCGACCGTACTCCCATTTACGCCGGAAGGGCA
ATGCACGAGGGTGAAATGCTGCCTGCCAAGGTGGTGCCGAGCAAGGGAAC
CGCCTACGTTTGCTTCGGCGGATACGAATTCCAGAAGCCCAGCTACGAGG
TGCTCACTGGCTACGGATATGTATGGATGAATTGCGGCCACAGCATTCCA
CCAAACGCCGTAACCACGGGTCGTGCTCGCAATGGAGAGCTGCTGTACTA
TGGGCGAGGACACTACCAGGGCAGTTTGACACCGGGTCTGATCTCGGCCA
GCCAGCGTTGCCTCTATATTCCGTACGGAGGTCGGGAGATTCGCATCAAC
TCGTACGAGATTCTCTGCAGACAAGCAAGCTTTCTAGACCAT
BO12208.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:21:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG44250-RB | 861 | CG44250-PB | 1..858 | 17..874 | 4290 | 100 | Plus |
CG44250-RC | 894 | CG44250-PC | 37..891 | 20..874 | 4275 | 100 | Plus |
CG32633-RB | 858 | CG32633-PB | 754..824 | 347..417 | 190 | 84.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:21:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG44250-RB | 1067 | CG44250-RB | 118..975 | 17..874 | 4290 | 100 | Plus |
CG44250-RC | 1100 | CG44250-RC | 154..1008 | 20..874 | 4275 | 100 | Plus |
CG32633-RB | 956 | CG32633-RB | 794..864 | 347..417 | 190 | 84.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:21:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12950496..12951350 | 874..20 | 4275 | 100 | Minus |
X | 23542271 | X | 13562712..13562782 | 347..417 | 190 | 84.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:21:25 has no hits.
BO12208.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:47 Download gff for
BO12208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3884-RB | 1..861 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:19 Download gff for
BO12208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3884-RB | 111..974 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:22:58 Download gff for
BO12208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG44250-RB | 118..975 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:47 Download gff for
BO12208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3884-RB | 111..974 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:27 Download gff for
BO12208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG44250-RB | 118..975 | 17..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:27 Download gff for
BO12208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12950494..12951351 | 17..876 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:22:58 Download gff for
BO12208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8837999..8838856 | 17..876 | 99 | | Minus |
BO12208.pep Sequence
Translation from 16 to 892
> BO12208.pep
MDNTWVHSSPYSPLPPYAVIGGHDSDRTPIYVGRSFHEGENLPAKVVPSK
GCAYVAYGGAEHTKTHYEVLVGQGFAWVPSSSGGVPPNAVRSGTTRTGEP
LYVGRGHHAGSLTVGKVHPSHGCLYIPFGGQEVRINTYEVLIKQQHDVWV
PASPSYTPPGAVIAGHDSDRTPIYAGRAMHEGEMLPAKVVPSKGTAYVCF
GGYEFQKPSYEVLTGYGYVWMNCGHSIPPNAVTTGRARNGELLYYGRGHY
QGSLTPGLISASQRCLYIPYGGREIRINSYEILCRQASFLDH
BO12208.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG44250-PB | 286 | CG44250-PB | 1..286 | 1..286 | 1578 | 100 | Plus |
CG44250-PC | 297 | CG44250-PC | 12..297 | 1..286 | 1574 | 99.7 | Plus |
CG13321-PB | 286 | CG13321-PB | 3..285 | 2..285 | 878 | 56.5 | Plus |
CG13321-PA | 286 | CG13321-PA | 3..285 | 2..285 | 878 | 56.5 | Plus |
CG32633-PB | 285 | CG32633-PB | 3..284 | 2..285 | 734 | 49.8 | Plus |
CG13321-PB | 286 | CG13321-PB | 16..149 | 158..290 | 402 | 54.5 | Plus |
CG13321-PA | 286 | CG13321-PA | 16..149 | 158..290 | 402 | 54.5 | Plus |