Clone BO12208 Report

Search the DGRC for BO12208

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:122
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG3884-RB
Protein status:BO12208.pep: validated full length
Sequenced Size:892

Clone Sequence Records

BO12208.3prime Sequence

472 bp (430 high quality bases) assembled on 2006-04-20

> BO12208.3prime
ATGGTCTAGAAAGCTTGCTTGTCTGCAGAGAATCTCGTACGAGTTGATGC
GAATCTCCCGACCTCCGTACGGAATATAGAGGCAACGCTGGCTGGCCGAG
ATCAGACCCGGTGTCAAACTGCCCTGGTAGTGTCCTCGCCCATAGTACAG
CAGCTCTCCATTGCGAGCACGACCCGTGGTTACGGCGTTTGGTGGAATGC
TGTGGCCGCAATTCATCCATACATATCCGTAGCCAGTGAGCACCTCGTAG
CTGGGCTTCTGGAATTCGTATCCGCCGAAGCAAACGTAGGCGGTTCCCTT
GCTCGGCACCACCTTGGCAGGCAGCATTTCACCCTCGTGCATTGCCCTTC
CGGCGTAAATGGGAGTACGGTCGGAGTCGTGTCCGGCGATCACTGCGCCC
GGAGGAGTGTAACTGGGCGAGGCCGGTACCCAGACGTCGTGCTGCTGCTT
GATGAGCACCTCGTAGGTGTTG

BO12208.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3884-PB 861 CG3884-RB 405..858 472..19 2270 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG44250-RC 1100 CG44250-RC 555..1008 472..19 2270 100 Minus
CG44250-RB 1067 CG44250-RB 522..975 472..19 2270 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12950496..12950949 19..472 2270 100 Plus
Blast to na_te.dros performed on 2015-02-01 04:57:49 has no hits.

BO12208.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:16 Download gff for BO12208.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3884-PB 405..861 15..472 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:18 Download gff for BO12208.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3884-PB 405..861 15..472 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:10:16 Download gff for BO12208.3prime
Subject Subject Range Query Range Percent Splice Strand
CG44250-RB 522..981 12..472 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:51:03 Download gff for BO12208.3prime
Subject Subject Range Query Range Percent Splice Strand
CG44250-RB 522..981 12..472 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:51:03 Download gff for BO12208.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12950490..12950949 12..472 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:10:16 Download gff for BO12208.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8837995..8838454 12..472 99   Plus

BO12208.5prime Sequence

853 bp (767 high quality bases) assembled on 2006-04-20

> BO12208.5prime
GAAGTTATCAGTCGACATGGACAACACCTGGGTGCACTCGTCTCCATACA
GCCCCCTGCCCCCATACGCGGTTATCGGTGGCCATGACTCGGACCGCACG
CCCATCTATGTGGGTCGATCCTTTCACGAAGGCGAGAATCTTCCCGCCAA
GGTCGTACCGAGCAAGGGATGCGCCTATGTGGCCTACGGTGGTGCGGAGC
ACACGAAGACGCACTACGAGGTGCTGGTGGGTCAGGGATTTGCCTGGGTG
CCCAGTTCCAGCGGTGGAGTGCCACCGAATGCGGTGAGGAGCGGAACGAC
GCGAACGGGCGAGCCGCTCTATGTGGGACGCGGACATCATGCCGGAAGCT
TGACTGTGGGCAAAGTTCATCCATCGCACGGCTGCCTATACATTCCATTT
GGCGGCCAGGAGGTGCGCATCAACACCTACGAGGTGCTCATCAAGCAGCA
GCACGACGTCTGGGTACCGGCCTCGCCCAGTTACACTCCTCCGGGCGCAG
TGATCGCCGGACACGACTCCGACCGTACTCCCATTTACGCCGGAAGGGCA
ATGCACGAGGGTGAAATGCTGCCTGCCAAGGTGGTGCCGAGCAAGGGAAC
CGCCTACGTTTGCTTCGGCGGATACGAATTCCAGAAGCCCAGCTACGAGG
TGCTCACTGGCTACGGATATGTATGGATGAATTGCGGCCACAGCATTCCA
CCAAACGCCGTAACCACGGGTCGTGCTCGCAATGGAGAGCTGCTGTACTA
TGGGCGAGGACACTACCAGGGCAGTTTGACACCGGGTCTGATCTCGGCCA
GCCAGCGTTGCCTCTATATTCCGTACGGAGGTCGGGAGATTCGCATCAAC
TCG

BO12208.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3884-PB 861 CG3884-RB 1..837 17..853 4185 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:32:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG44250-RB 1067 CG44250-RB 118..954 17..853 4185 100 Plus
CG44250-RC 1100 CG44250-RC 154..987 20..853 4170 100 Plus
CG32633-RB 956 CG32633-RB 794..864 347..417 190 84.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12950517..12951350 853..20 4170 100 Minus
X 23542271 X 13562712..13562782 347..417 190 84.5 Plus
Blast to na_te.dros performed on 2015-02-12 04:32:43 has no hits.

BO12208.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:17 Download gff for BO12208.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3884-PB 1..837 17..853 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:20 Download gff for BO12208.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3884-PB 1..837 17..853 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:50:12 Download gff for BO12208.5prime
Subject Subject Range Query Range Percent Splice Strand
CG44250-RB 118..954 17..853 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:59 Download gff for BO12208.5prime
Subject Subject Range Query Range Percent Splice Strand
CG44250-RB 118..954 17..853 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:59 Download gff for BO12208.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12950517..12951352 16..853 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:50:12 Download gff for BO12208.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8838022..8838857 16..853 99   Minus

BO12208.complete Sequence

892 bp assembled on 2006-10-11

GenBank Submission: FJ632357

> BO12208.complete
GAAGTTATCAGTCGACATGGACAACACCTGGGTGCACTCGTCTCCATACA
GCCCCCTGCCCCCATACGCGGTTATCGGTGGCCATGACTCGGACCGCACG
CCCATCTATGTGGGTCGATCCTTTCACGAAGGCGAGAATCTTCCCGCCAA
GGTCGTACCGAGCAAGGGATGCGCCTATGTGGCCTACGGTGGTGCGGAGC
ACACGAAGACGCACTACGAGGTGCTGGTGGGTCAGGGATTTGCCTGGGTG
CCCAGTTCCAGCGGTGGAGTGCCACCGAATGCGGTGAGGAGCGGAACGAC
GCGAACGGGCGAGCCGCTCTATGTGGGACGCGGACATCATGCCGGAAGCT
TGACTGTGGGCAAAGTTCATCCATCGCACGGCTGCCTATACATTCCATTT
GGCGGCCAGGAGGTGCGCATCAACACCTACGAGGTGCTCATCAAGCAGCA
GCACGACGTCTGGGTACCGGCCTCGCCCAGTTACACTCCTCCGGGCGCAG
TGATCGCCGGACACGACTCCGACCGTACTCCCATTTACGCCGGAAGGGCA
ATGCACGAGGGTGAAATGCTGCCTGCCAAGGTGGTGCCGAGCAAGGGAAC
CGCCTACGTTTGCTTCGGCGGATACGAATTCCAGAAGCCCAGCTACGAGG
TGCTCACTGGCTACGGATATGTATGGATGAATTGCGGCCACAGCATTCCA
CCAAACGCCGTAACCACGGGTCGTGCTCGCAATGGAGAGCTGCTGTACTA
TGGGCGAGGACACTACCAGGGCAGTTTGACACCGGGTCTGATCTCGGCCA
GCCAGCGTTGCCTCTATATTCCGTACGGAGGTCGGGAGATTCGCATCAAC
TCGTACGAGATTCTCTGCAGACAAGCAAGCTTTCTAGACCAT

BO12208.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:21:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG44250-RB 861 CG44250-PB 1..858 17..874 4290 100 Plus
CG44250-RC 894 CG44250-PC 37..891 20..874 4275 100 Plus
CG32633-RB 858 CG32633-PB 754..824 347..417 190 84.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:21:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG44250-RB 1067 CG44250-RB 118..975 17..874 4290 100 Plus
CG44250-RC 1100 CG44250-RC 154..1008 20..874 4275 100 Plus
CG32633-RB 956 CG32633-RB 794..864 347..417 190 84.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:21:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12950496..12951350 874..20 4275 100 Minus
X 23542271 X 13562712..13562782 347..417 190 84.5 Plus
Blast to na_te.dros performed on 2014-11-28 00:21:25 has no hits.

BO12208.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:47 Download gff for BO12208.complete
Subject Subject Range Query Range Percent Splice Strand
CG3884-RB 1..861 17..878 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:19 Download gff for BO12208.complete
Subject Subject Range Query Range Percent Splice Strand
CG3884-RB 111..974 17..881 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:22:58 Download gff for BO12208.complete
Subject Subject Range Query Range Percent Splice Strand
CG44250-RB 118..975 17..876 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:47 Download gff for BO12208.complete
Subject Subject Range Query Range Percent Splice Strand
CG3884-RB 111..974 17..881 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:27 Download gff for BO12208.complete
Subject Subject Range Query Range Percent Splice Strand
CG44250-RB 118..975 17..876 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:27 Download gff for BO12208.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12950494..12951351 17..876 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:22:58 Download gff for BO12208.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8837999..8838856 17..876 99   Minus

BO12208.pep Sequence

Translation from 16 to 892

> BO12208.pep
MDNTWVHSSPYSPLPPYAVIGGHDSDRTPIYVGRSFHEGENLPAKVVPSK
GCAYVAYGGAEHTKTHYEVLVGQGFAWVPSSSGGVPPNAVRSGTTRTGEP
LYVGRGHHAGSLTVGKVHPSHGCLYIPFGGQEVRINTYEVLIKQQHDVWV
PASPSYTPPGAVIAGHDSDRTPIYAGRAMHEGEMLPAKVVPSKGTAYVCF
GGYEFQKPSYEVLTGYGYVWMNCGHSIPPNAVTTGRARNGELLYYGRGHY
QGSLTPGLISASQRCLYIPYGGREIRINSYEILCRQASFLDH

BO12208.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG44250-PB 286 CG44250-PB 1..286 1..286 1578 100 Plus
CG44250-PC 297 CG44250-PC 12..297 1..286 1574 99.7 Plus
CG13321-PB 286 CG13321-PB 3..285 2..285 878 56.5 Plus
CG13321-PA 286 CG13321-PA 3..285 2..285 878 56.5 Plus
CG32633-PB 285 CG32633-PB 3..284 2..285 734 49.8 Plus
CG13321-PB 286 CG13321-PB 16..149 158..290 402 54.5 Plus
CG13321-PA 286 CG13321-PA 16..149 158..290 402 54.5 Plus