Clone Sequence Records
BO12209.3prime Sequence
356 bp (355 high quality bases) assembled on 2006-04-20
> BO12209.3prime
ATGGTCTAGAAAGCTTGCTCCAGCAGCGGACTTCAGGGCTCCGGGGCTCA
GTTTCCGGTTCTTGATCTGGTAACGGGCCTTGTAACCATCCTTGTCGGCG
GTGTACATCGTCACAGTCTCGGTGTCAGTCTTTTCATCGTACGAGGAGTA
CATACCCATGACCACCAGTTGCTCGTCGGGAGTGCCGGGGTTCATGATCA
CGCCCATCTCCTCGCGCTTGCTGCCATTTGGCTCCTCCGACGCGAAGCGG
TATCCCTCCTTGGTCGGCGCCTGGTTGTAATACTCCGACACAATGGTGGG
GAAGACGTAGTCCAGAAGTCCCGCCGAGCTGTGGGCGGCCATGTCGACTG
ATAACT
BO12209.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15515-PA | 327 | CG15515-RA | 1..324 | 342..19 | 1620 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:18:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15515-RB | 472 | CG15515-RB | 80..403 | 342..19 | 1620 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:18:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29906157..29906379 | 241..19 | 1115 | 100 | Minus |
3R | 32079331 | 3R | 29905999..29906101 | 342..240 | 515 | 100 | Minus |
Blast to na_te.dros performed 2015-02-08 13:18:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HMS-Beagle2 | 7220 | HMS-Beagle2 Beagle2 7220bp | 5550..5622 | 153..81 | 113 | 65.3 | Minus |
BO12209.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:18 Download gff for
BO12209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15515-PA | 1..327 | 15..342 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:22 Download gff for
BO12209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15515-PA | 1..327 | 15..342 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:44:52 Download gff for
BO12209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15515-RB | 80..407 | 14..342 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:27:26 Download gff for
BO12209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15515-RB | 80..407 | 14..342 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:27:26 Download gff for
BO12209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29905999..29906099 | 242..342 | 100 | -> | Minus |
3R | 29906157..29906383 | 14..241 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:44:52 Download gff for
BO12209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25731721..25731821 | 242..342 | 100 | -> | Minus |
arm_3R | 25731879..25732105 | 14..241 | 99 | | Minus |
BO12209.5prime Sequence
356 bp (355 high quality bases) assembled on 2006-04-20
> BO12209.5prime
GAAGTTATCAGTCGACATGGCCGCCCACAGCTCGGCGGGACTTCTGGACT
ACGTCTTCCCCACCATTGTGTCGGAGTATTACAACCAGGCGCCGACCAAG
GAGGGATACCGCTTCGCGTCGGAGGAGCCAAATGGCAGCAAGCGCGAGGA
GATGGGCGTGATCATGAACCCCGGCACTCCCGACGAGCAACTGGTGGTCA
TGGGTATGTACTCCTCGTACGATGAAAAGACTGACACCGAGACTGTGACG
ATGTACACCGCCGACAAGGATGGTTACAAGGCCCGTTACCAGATCAAGAA
CCGGAAACTGAGCCCCGGAGCCCTGAAGTCCGCTGCTGGAGCAAGCTTTC
TAGACC
BO12209.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15515-PA | 327 | CG15515-RA | 1..324 | 17..340 | 1620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:51:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15515-RB | 472 | CG15515-RB | 80..403 | 17..340 | 1620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:51:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29906157..29906379 | 118..340 | 1115 | 100 | Plus |
3R | 32079331 | 3R | 29905999..29906101 | 17..119 | 515 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 04:51:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HMS-Beagle2 | 7220 | HMS-Beagle2 Beagle2 7220bp | 5550..5622 | 206..278 | 113 | 65.3 | Plus |
BO12209.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:20 Download gff for
BO12209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15515-PA | 1..327 | 17..344 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:24 Download gff for
BO12209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15515-PA | 1..327 | 17..344 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 23:29:37 Download gff for
BO12209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15515-RB | 80..407 | 17..345 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:28:49 Download gff for
BO12209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15515-RB | 80..407 | 17..345 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:28:49 Download gff for
BO12209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29905999..29906099 | 17..117 | 100 | -> | Plus |
3R | 29906157..29906383 | 118..345 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 23:29:37 Download gff for
BO12209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25731721..25731821 | 17..117 | 100 | -> | Plus |
arm_3R | 25731879..25732105 | 118..345 | 99 | | Plus |
BO12209.complete Sequence
358 bp assembled on 2006-10-11
GenBank Submission: FJ632358
> BO12209.complete
GAAGTTATCAGTCGACATGGCCGCCCACAGCTCGGCGGGACTTCTGGACT
ACGTCTTCCCCACCATTGTGTCGGAGTATTACAACCAGGCGCCGACCAAG
GAGGGATACCGCTTCGCGTCGGAGGAGCCAAATGGCAGCAAGCGCGAGGA
GATGGGCGTGATCATGAACCCCGGCACTCCCGACGAGCAACTGGTGGTCA
TGGGTATGTACTCCTCGTACGATGAAAAGACTGACACCGAGACTGTGACG
ATGTACACCGCCGACAAGGATGGTTACAAGGCCCGTTACCAGATCAAGAA
CCGGAAACTGAGCCCCGGAGCCCTGAAGTCCGCTGCTGGAGCAAGCTTTC
TAGACCAT
BO12209.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:26:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15515-RB | 372 | CG15515-PB | 46..369 | 17..340 | 1620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:26:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15515-RB | 472 | CG15515-RB | 80..403 | 17..340 | 1620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:26:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29906157..29906379 | 118..340 | 1115 | 100 | Plus |
3R | 32079331 | 3R | 29905999..29906101 | 17..119 | 515 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:26:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HMS-Beagle2 | 7220 | HMS-Beagle2 Beagle2 7220bp | 5550..5622 | 206..278 | 113 | 65.3 | Plus |
BO12209.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:03 Download gff for
BO12209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15515-RA | 1..327 | 17..344 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:21 Download gff for
BO12209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15515-RA | 534..861 | 17..345 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:16 Download gff for
BO12209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15515-RB | 80..403 | 17..342 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:04 Download gff for
BO12209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15515-RA | 534..861 | 17..345 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:34 Download gff for
BO12209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15515-RB | 80..403 | 17..342 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:34 Download gff for
BO12209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29905999..29906099 | 17..117 | 100 | -> | Plus |
3R | 29906157..29906379 | 118..342 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:16 Download gff for
BO12209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25731721..25731821 | 17..117 | 100 | -> | Plus |
arm_3R | 25731879..25732101 | 118..342 | 99 | | Plus |
BO12209.pep Sequence
Translation from 16 to 358
> BO12209.pep
MAAHSSAGLLDYVFPTIVSEYYNQAPTKEGYRFASEEPNGSKREEMGVIM
NPGTPDEQLVVMGMYSSYDEKTDTETVTMYTADKDGYKARYQIKNRKLSP
GALKSAAGASFLDH
BO12209.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:18:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15515-PB | 123 | CG15515-PB | 16..123 | 1..108 | 561 | 100 | Plus |