Clone BO12209 Report

Search the DGRC for BO12209

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:122
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG15515-RA
Protein status:BO12209.pep: validated full length
Sequenced Size:358

Clone Sequence Records

BO12209.3prime Sequence

356 bp (355 high quality bases) assembled on 2006-04-20

> BO12209.3prime
ATGGTCTAGAAAGCTTGCTCCAGCAGCGGACTTCAGGGCTCCGGGGCTCA
GTTTCCGGTTCTTGATCTGGTAACGGGCCTTGTAACCATCCTTGTCGGCG
GTGTACATCGTCACAGTCTCGGTGTCAGTCTTTTCATCGTACGAGGAGTA
CATACCCATGACCACCAGTTGCTCGTCGGGAGTGCCGGGGTTCATGATCA
CGCCCATCTCCTCGCGCTTGCTGCCATTTGGCTCCTCCGACGCGAAGCGG
TATCCCTCCTTGGTCGGCGCCTGGTTGTAATACTCCGACACAATGGTGGG
GAAGACGTAGTCCAGAAGTCCCGCCGAGCTGTGGGCGGCCATGTCGACTG
ATAACT

BO12209.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG15515-PA 327 CG15515-RA 1..324 342..19 1620 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:18:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG15515-RB 472 CG15515-RB 80..403 342..19 1620 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:18:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29906157..29906379 241..19 1115 100 Minus
3R 32079331 3R 29905999..29906101 342..240 515 100 Minus
Blast to na_te.dros performed 2015-02-08 13:18:45
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle2 7220 HMS-Beagle2 Beagle2 7220bp 5550..5622 153..81 113 65.3 Minus

BO12209.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:18 Download gff for BO12209.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15515-PA 1..327 15..342 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:22 Download gff for BO12209.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15515-PA 1..327 15..342 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:44:52 Download gff for BO12209.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15515-RB 80..407 14..342 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:27:26 Download gff for BO12209.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15515-RB 80..407 14..342 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:27:26 Download gff for BO12209.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29905999..29906099 242..342 100 -> Minus
3R 29906157..29906383 14..241 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:44:52 Download gff for BO12209.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25731721..25731821 242..342 100 -> Minus
arm_3R 25731879..25732105 14..241 99   Minus

BO12209.5prime Sequence

356 bp (355 high quality bases) assembled on 2006-04-20

> BO12209.5prime
GAAGTTATCAGTCGACATGGCCGCCCACAGCTCGGCGGGACTTCTGGACT
ACGTCTTCCCCACCATTGTGTCGGAGTATTACAACCAGGCGCCGACCAAG
GAGGGATACCGCTTCGCGTCGGAGGAGCCAAATGGCAGCAAGCGCGAGGA
GATGGGCGTGATCATGAACCCCGGCACTCCCGACGAGCAACTGGTGGTCA
TGGGTATGTACTCCTCGTACGATGAAAAGACTGACACCGAGACTGTGACG
ATGTACACCGCCGACAAGGATGGTTACAAGGCCCGTTACCAGATCAAGAA
CCGGAAACTGAGCCCCGGAGCCCTGAAGTCCGCTGCTGGAGCAAGCTTTC
TAGACC

BO12209.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG15515-PA 327 CG15515-RA 1..324 17..340 1620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG15515-RB 472 CG15515-RB 80..403 17..340 1620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29906157..29906379 118..340 1115 100 Plus
3R 32079331 3R 29905999..29906101 17..119 515 100 Plus
Blast to na_te.dros performed 2015-02-11 04:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle2 7220 HMS-Beagle2 Beagle2 7220bp 5550..5622 206..278 113 65.3 Plus

BO12209.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:20 Download gff for BO12209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15515-PA 1..327 17..344 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:24 Download gff for BO12209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15515-PA 1..327 17..344 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 23:29:37 Download gff for BO12209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15515-RB 80..407 17..345 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:28:49 Download gff for BO12209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15515-RB 80..407 17..345 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:28:49 Download gff for BO12209.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29905999..29906099 17..117 100 -> Plus
3R 29906157..29906383 118..345 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 23:29:37 Download gff for BO12209.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25731721..25731821 17..117 100 -> Plus
arm_3R 25731879..25732105 118..345 99   Plus

BO12209.complete Sequence

358 bp assembled on 2006-10-11

GenBank Submission: FJ632358

> BO12209.complete
GAAGTTATCAGTCGACATGGCCGCCCACAGCTCGGCGGGACTTCTGGACT
ACGTCTTCCCCACCATTGTGTCGGAGTATTACAACCAGGCGCCGACCAAG
GAGGGATACCGCTTCGCGTCGGAGGAGCCAAATGGCAGCAAGCGCGAGGA
GATGGGCGTGATCATGAACCCCGGCACTCCCGACGAGCAACTGGTGGTCA
TGGGTATGTACTCCTCGTACGATGAAAAGACTGACACCGAGACTGTGACG
ATGTACACCGCCGACAAGGATGGTTACAAGGCCCGTTACCAGATCAAGAA
CCGGAAACTGAGCCCCGGAGCCCTGAAGTCCGCTGCTGGAGCAAGCTTTC
TAGACCAT

BO12209.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG15515-RB 372 CG15515-PB 46..369 17..340 1620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:26:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG15515-RB 472 CG15515-RB 80..403 17..340 1620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:26:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29906157..29906379 118..340 1115 100 Plus
3R 32079331 3R 29905999..29906101 17..119 515 100 Plus
Blast to na_te.dros performed 2014-11-28 00:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle2 7220 HMS-Beagle2 Beagle2 7220bp 5550..5622 206..278 113 65.3 Plus

BO12209.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:03 Download gff for BO12209.complete
Subject Subject Range Query Range Percent Splice Strand
CG15515-RA 1..327 17..344 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:21 Download gff for BO12209.complete
Subject Subject Range Query Range Percent Splice Strand
CG15515-RA 534..861 17..345 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:16 Download gff for BO12209.complete
Subject Subject Range Query Range Percent Splice Strand
CG15515-RB 80..403 17..342 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:04 Download gff for BO12209.complete
Subject Subject Range Query Range Percent Splice Strand
CG15515-RA 534..861 17..345 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:34 Download gff for BO12209.complete
Subject Subject Range Query Range Percent Splice Strand
CG15515-RB 80..403 17..342 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:34 Download gff for BO12209.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29905999..29906099 17..117 100 -> Plus
3R 29906157..29906379 118..342 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:16 Download gff for BO12209.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25731721..25731821 17..117 100 -> Plus
arm_3R 25731879..25732101 118..342 99   Plus

BO12209.pep Sequence

Translation from 16 to 358

> BO12209.pep
MAAHSSAGLLDYVFPTIVSEYYNQAPTKEGYRFASEEPNGSKREEMGVIM
NPGTPDEQLVVMGMYSSYDEKTDTETVTMYTADKDGYKARYQIKNRKLSP
GALKSAAGASFLDH

BO12209.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG15515-PB 123 CG15515-PB 16..123 1..108 561 100 Plus