Clone Sequence Records
BO12210.3prime Sequence
863 bp (779 high quality bases) assembled on 2006-04-20
> BO12210.3prime
ATGGTCTAGAAAGCTTGCAATGTTGATGTTCTTCAATTTGCGATTCAGAT
CGTTGAACTTAAGAATTTTACGCACAAAGAAGTCGCCATACCGATGTGAA
ACCTTGGTGTCGGCTATGTGGATCATGTCGTCGTCGATGTAGAAGTCCAA
CTCGGAGCCAGACTTGAATGTGCCTTCCAGGCCGCTGGGTCCCTTGCTCC
ACACTAGGTTGCGCATTTTGTGCTTGAAGCAAAGCAGGCGAATCAGCAGC
TTCGACACGTCATCCTCGCTGGCGTTGGGATCGATGAAAGATGCCAGTTT
GGTCAGCGGCAGGGTGGTGTACAGCTTTAGATACGAGCGCGTTGTGGGCA
GATCCTTCTGCTGGCGCACCTCATCCATGAAAACCTGCAACTGGTGTTCC
ATGGGGTCCTTGACGTAGTCGTCCATGGGTGCGTCTACAGCTGGCGGGCA
GGGGCTCACGAAACGTGGGCAGGCGAAGACAAAGAAGGACTTGAAGACCT
CCAGATCACCGCACTGCATCTTAAACATGGCGTCGTGGTAGTTCTTTTCC
CTGAGCACCTGCTGGATGGACTCGTCGATGCACTGGGGATGGAGTACCAG
GCAGATGGCCAAAAGATGGTACATCTGCTCGGCCTGCTTGTTGATTTGAT
CGTTTTGGTATGAACGCGTGCTGTACAGCTGCTTGGTACGCTGAATGTAC
AGGAGGATATCAGAAAAGGTGCGGATGGCATCAGCGTAGCGGCGCATCAT
CATGTAGGCGAAGCCCACGTAGTACGACGTCGAGATTTGGCAGGCGGGGA
TGTGCGAATAGGCGGACTTCTTGTGGATCTCAATGGGCTCCAGCACCTTG
ATGGCCTGGTAGT
BO12210.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5642-PA | 1620 | CG5642-RA | 773..1617 | 863..19 | 4200 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:16:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5642-RA | 1834 | CG5642-RA | 882..1726 | 863..19 | 4210 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:15:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12143745..12144457 | 151..863 | 3550 | 99.9 | Plus |
| 3L | 28110227 | 3L | 12143554..12143687 | 19..152 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:16:00 has no hits.
BO12210.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:21 Download gff for
BO12210.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5642-PA | 773..1620 | 15..863 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:25 Download gff for
BO12210.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5642-PA | 773..1620 | 15..863 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:24:43 Download gff for
BO12210.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5642-RA | 882..1736 | 8..863 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:21:16 Download gff for
BO12210.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5642-RA | 882..1736 | 8..863 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:21:16 Download gff for
BO12210.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12143544..12143685 | 8..150 | 96 | <- | Plus |
| 3L | 12143745..12144457 | 151..863 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:24:43 Download gff for
BO12210.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12136644..12136785 | 8..150 | 96 | <- | Plus |
| arm_3L | 12136845..12137557 | 151..863 | 99 | | Plus |
BO12210.5prime Sequence
506 bp (458 high quality bases) assembled on 2006-04-20
> BO12210.5prime
GAAGTTATCAGTCGACATGTACGGTGGAGACGAATACGCAACCAACTCGG
ATTACTACGATGACTACGCTCATACCGGAGACCCGCAACTGGACATGGAG
TACGAGAGGAACTACTACGCCGCCCGGATGCCGGACAACGTCAAGTACTT
CCTCATAAACTTCTGCCAGGCGATCAAAGAGGGCAACTTGTACGACATCC
AAAACATGTACGAGAACACGTTCCCGCAGATCAGCGACCACCACTTCGAC
AAGACTGCTTGGCCCGAGGAGCAGGAGGTGGCTGCTATTGTAGACAACGA
CAAGGTCTTCCTGATCTTATACAAGGAGTTGTACTATCGCCACATCCACG
CCCGCATCCCCGGTGGTCCCAAGTTGGAGCAGAGGATCAACTCGTTCTTC
AACTACTGCGACTTCTTCAACCTGATCATCTCGGCCCAGAACCCAGTGAT
GCTGGAGCTGCCCGACATCTGGCTGTGGGAGTTGGTGGATGAGTTCGTGT
ATCCGT
BO12210.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5642-PA | 1620 | CG5642-RA | 1..487 | 17..503 | 2435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:33:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5642-RA | 1834 | CG5642-RA | 110..596 | 17..503 | 2435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:33:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12144797..12145251 | 503..49 | 2275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:33:30 has no hits.
BO12210.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:22 Download gff for
BO12210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5642-PA | 1..490 | 17..506 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:26 Download gff for
BO12210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5642-PA | 1..490 | 17..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:12:54 Download gff for
BO12210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5642-RA | 102..599 | 9..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:44:28 Download gff for
BO12210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5642-RA | 102..599 | 9..506 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:44:28 Download gff for
BO12210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12144794..12145250 | 50..506 | 99 | <- | Minus |
| 3L | 12145956..12145993 | 14..49 | 94 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:12:54 Download gff for
BO12210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12137894..12138350 | 50..506 | 99 | <- | Minus |
| arm_3L | 12139056..12139093 | 14..49 | 94 | <- | Minus |
BO12210.complete Sequence
1651 bp assembled on 2008-11-10
GenBank Submission: KX799777
> BO12210.complete
GAAGTTATCAGTCGACATGTACGGTGGAGACGAATACGCAACCAACTCGG
ATTACTACGATGACTACGCTCATACCGGAGACCCGCAACTGGACATGGAG
TACGAGAGGAACTACTACGCCGCCCGGATGCCGGACAACGTCAAGTACTT
CCTCATAAACTTCTGCCAGGCGATCAAAGAGGGCAACTTGTACGACATCC
AAAACATGTACGAGAACACGTTCCCGCAGATCAGCGACCACCACTTCGAC
AAGACTGCTTGGCCCGAGGAGCAGGAGGTGGCTGCTATTGTAGACAACGA
CAAGGTCTTCCTGATCTTATACAAGGAGTTGTACTATCGCCACATCCACG
CCCGCATCCCCGGTGGTCCCAAGTTGGAGCAGAGGATCAACTCGTTCTTC
AACTACTGCGACTTCTTCAACCTGATCATCTCGGCCCAGAACCCAGTGAT
GCTGGAGCTGCCCGACATCTGGCTGTGGGAGTTGGTGGATGAGTTCGTGT
ATCAGTTCCAGAACTTCGCGCAGTATCGCGCCCGCCTTACGGAGAAATCG
CAGGATGAGATCCAGCAGCTGTGCGTGAACCACAGCAACGAGTGGAGCAT
TCTCTGCATCCTCAACGTTCTGCATTCCCTTGTGGACATCTCGAACATCA
AGAAGCAGCTGGAGGCCATCTCTCAAGGTGTTGATCCCCAAACCGTGGCC
GGTGACTTCGGCAAACTGTCCTTCTACAAGATGCTGGGATACTTCTCCCT
TGTCGGACTGCTGCGCGTTCATTCGCTGCTGGGTGACTACTACCAGGCCA
TCAAGGTGCTGGAGCCCATTGAGATCCACAAGAAGTCCGCCTATTCGCAC
ATCCCCGCCTGCCAAATCTCGACGTCGTACTACGTGGGCTTCGCCTACAT
GATGATGCGCCGCTACGCTGATGCCATCCGCACCTTTTCTGATATCCTCC
TGTACATTCAGCGTACCAAGCAGCTGTACAGCACGCGTTCATACCAAAAC
GATCAAATCAACAAGCAGGCCGAGCAGATGTACCATCTTTTGGCCATCTG
CCTGGTACTCCATCCCCAGTGCATCGACGAGTCCATCCAGCAGGTGCTCA
GGGAAAAGAACTACCACGACGCCATGTTTAAGATGCAGTGCGGTGATCTG
GAGGTCTTCAAGTCCTTCTTTGTCTTCGCCTGCCCACGTTTCGTGAGCCC
CTGCCCGCCAGCTGTAGACGCACCCATGGACGACTACGTCAAGGACCCCA
TGGAACACCAGTTGCAGGTTTTCATGGATGAGGTGCGCCAGCAGAAGGAT
CTGCCCACAACGCGCTCGTATCTAAAGCTGTACACCACCCTGCCGCTGAC
CAAACTGGCATCTTTCATCGATCCCAACGCCAGCGAGGATGACGTGTCGA
AGCTGCTGATTCGCCTGCTTTGCTTCAAGCACAAAATGCGCAACCTAGTG
TGGAGCAAGGGACCCAGCGGCCTGGAAGGCACATTCAAGTCTGGCTCCGA
GTTGGACTTCTACATCGACGACGACATGATCCACATAGCCGACACCAAGG
TTTCACATCGGTATGGCGACTTCTTTGTGCGTAAAATTCTTAAGTTCAAC
GATCTGAATCGCAAATTGAAGAACATCAACATTGCAAGCTTTCTAGACCA
T
BO12210.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:06:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5642-RA | 1620 | CG5642-PA | 1..1617 | 17..1633 | 8070 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:06:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5642-RA | 1834 | CG5642-RA | 110..1726 | 17..1633 | 8070 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:06:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12143745..12144718 | 1501..528 | 4855 | 99.9 | Minus |
| 3L | 28110227 | 3L | 12144772..12145251 | 528..49 | 2400 | 100 | Minus |
| 3L | 28110227 | 3L | 12143554..12143687 | 1633..1500 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:06:33 has no hits.
BO12210.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:30 Download gff for
BO12210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5642-RA | 120..1754 | 9..1644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:47:01 Download gff for
BO12210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5642-RA | 110..1726 | 17..1635 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:02:16 Download gff for
BO12210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5642-RA | 128..1744 | 17..1635 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:51:28 Download gff for
BO12210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5642-RA | 110..1726 | 17..1635 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:51:28 Download gff for
BO12210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12143552..12143685 | 1502..1635 | 98 | <- | Minus |
| 3L | 12143745..12144717 | 529..1501 | 99 | <- | Minus |
| 3L | 12144772..12145250 | 50..528 | 100 | <- | Minus |
| 3L | 12145956..12145988 | 17..49 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:47:01 Download gff for
BO12210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12136652..12136785 | 1502..1635 | 98 | <- | Minus |
| arm_3L | 12136845..12137817 | 529..1501 | 99 | <- | Minus |
| arm_3L | 12137872..12138350 | 50..528 | 100 | <- | Minus |
| arm_3L | 12139056..12139088 | 17..49 | 100 | | Minus |
BO12210.pep Sequence
Translation from 16 to 1651
> BO12210.pep
MYGGDEYATNSDYYDDYAHTGDPQLDMEYERNYYAARMPDNVKYFLINFC
QAIKEGNLYDIQNMYENTFPQISDHHFDKTAWPEEQEVAAIVDNDKVFLI
LYKELYYRHIHARIPGGPKLEQRINSFFNYCDFFNLIISAQNPVMLELPD
IWLWELVDEFVYQFQNFAQYRARLTEKSQDEIQQLCVNHSNEWSILCILN
VLHSLVDISNIKKQLEAISQGVDPQTVAGDFGKLSFYKMLGYFSLVGLLR
VHSLLGDYYQAIKVLEPIEIHKKSAYSHIPACQISTSYYVGFAYMMMRRY
ADAIRTFSDILLYIQRTKQLYSTRSYQNDQINKQAEQMYHLLAICLVLHP
QCIDESIQQVLREKNYHDAMFKMQCGDLEVFKSFFVFACPRFVSPCPPAV
DAPMDDYVKDPMEHQLQVFMDEVRQQKDLPTTRSYLKLYTTLPLTKLASF
IDPNASEDDVSKLLIRLLCFKHKMRNLVWSKGPSGLEGTFKSGSELDFYI
DDDMIHIADTKVSHRYGDFFVRKILKFNDLNRKLKNINIASFLDH
BO12210.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:14:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5642-PA | 539 | CG5642-PA | 1..539 | 1..539 | 2873 | 100 | Plus |
