Clone BO12211 Report

Search the DGRC for BO12211

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:122
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG40198-RB
Protein status:BO12211.pep:
Sequenced Size:586

Clone Sequence Records

BO12211.3prime Sequence

584 bp (583 high quality bases) assembled on 2006-04-20

> BO12211.3prime
ATGGTCTAGAAAGCTTGCATTGGTGGGGGAAATGGGGGTGCGATAGGAGT
ATCCAGGTTTTGGTGTCGTCAAGATGGGTGGTTGTGTTACGGATGTGGTG
CTCTCTATTGGGATCACTGAAGTGGTAGTGGCTGGTGGCTCGGGATGTAT
TGTGGGGATCGGCGTTTCGACAAAACTTTCTGTTGTTGTCGAGTAAAAAA
GTTGAGTAGTCCTACTAGATTCATCCGGAGTAAAGTCTGTGTTTACCTCG
GTGGTATGGTGTGTCACAGGCCTTTCGGTGGTGCTCGTGGCGCTTGTGGG
GCCAAATAAATTGACAGACTTATTGAAACCAATACGGAACCCCCCGGAAG
AAGACTTGGTCTGTAGCACGCTGTTCAACAGTTGAATTTTTGATGAGATA
AGACCAGAGATAAGCTGACTGGTGAAAGGCGATGCTCCCACTGTATTTTG
GTAACTGGCACTGGAGTAGCCACCGCTGGGAGCGAAAACCTTAATAAGGA
CAGGTTTTCCTTCTGCAATGATGGCCCCACTGAGGGCGATAAGAACACCA
ATCGATATAGTTTTCAACATGTCGACTGATAACT

BO12211.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 14:39:36 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG40198-RB 669 CG40198-RB 28..580 571..19 2765 100 Minus
CG40198-RC 1567 CG40198-RC 28..580 571..19 2765 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:54:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4161597..4162049 19..471 2265 100 Plus
3R 32079331 3R 4162107..4162208 470..571 510 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:54:46 has no hits.

BO12211.3prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:50:01 Download gff for BO12211.3prime
Subject Subject Range Query Range Percent Splice Strand
CG40198-RC 22..585 11..578 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:20:45 Download gff for BO12211.3prime
Subject Subject Range Query Range Percent Splice Strand
CG40198-RC 22..585 11..578 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:20:45 Download gff for BO12211.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4161592..4162048 11..470 99 <- Plus
3R 4162108..4162211 471..578 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:50:01 Download gff for BO12211.3prime
Subject Subject Range Query Range Percent Splice Strand
3RHet 2505358..2505814 11..470 99 <- Plus
3RHet 2505874..2505977 471..578 96   Plus

BO12211.5prime Sequence

584 bp (583 high quality bases) assembled on 2006-04-20

> BO12211.5prime
GAAGTTATCAGTCGACATGTTGAAAACTATATCGATTGGTGTTCTTATCG
CCCTCAGTGGGGCCATCATTGCAGAAGGAAAACCTGTCCTTATTAAGGTT
TTCGCTCCCAGCGGTGGCTACTCCAGTGCCAGTTACCAAAATACAGTGGG
AGCATCGCCTTTCACCAGTCAGCTTATCTCTGGTCTTATCTCATCAAAAA
TTCAACTGTTGAACAGCGTGCTACAGACCAAGTCTTCTTCCGGGGGGTTC
CGTATTGGTTTCAATAAGTCTGTCAATTTATTTGGCCCCACAAGCGCCAC
GAGCACCACCGAAAGGCCTGTGACACACCATACCACCGAGGTAAACACAG
ACTTTACTCCGGATGAATCTAGTAGGACTACTCAACTTTTTTACTCGACA
ACAACAGAAAGTTTTGTCGAAACGCCGATCCCCACAATACATCCCGAGCC
ACCAGCCACTACCACTTCAGTGATCCCAATAGAGAGCACCACATCCGTAA
CACAACCACCCATCTTGACGACACCAAAACCTGGATACTCCTATCGCACC
CCCATTTCCCCCACCAATGCAAGCTTTCTAGACC

BO12211.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 14:39:37 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:56:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG40198-RB 669 CG40198-RB 28..580 16..568 2765 100 Plus
CG40198-RC 1567 CG40198-RC 28..580 16..568 2765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4161597..4162049 568..116 2265 100 Minus
3R 32079331 3R 4162107..4162208 117..16 510 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:56:08 has no hits.

BO12211.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:05:19 Download gff for BO12211.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40198-RC 22..585 9..576 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:29:44 Download gff for BO12211.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40198-RC 22..585 9..576 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:29:44 Download gff for BO12211.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4161592..4162048 117..576 99 <- Minus
3R 4162108..4162211 9..116 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:05:19 Download gff for BO12211.5prime
Subject Subject Range Query Range Percent Splice Strand
3RHet 2505358..2505814 117..576 99 <- Minus
3RHet 2505874..2505977 9..116 96   Minus

BO12211.complete Sequence

586 bp assembled on 2006-10-11

GenBank Submission: KX794160

> BO12211.complete
GAAGTTATCAGTCGACATGTTGAAAACTATATCGATTGGTGTTCTTATCG
CCCTCAGTGGGGCCATCATTGCAGAAGGAAAACCTGTCCTTATTAAGGTT
TTCGCTCCCAGCGGTGGCTACTCCAGTGCCAGTTACCAAAATACAGTGGG
AGCATCGCCTTTCACCAGTCAGCTTATCTCTGGTCTTATCTCATCAAAAA
TTCAACTGTTGAACAGCGTGCTACAGACCAAGTCTTCTTCCGGGGGGTTC
CGTATTGGTTTCAATAAGTCTGTCAATTTATTTGGCCCCACAAGCGCCAC
GAGCACCACCGAAAGGCCTGTGACACACCATACCACCGAGGTAAACACAG
ACTTTACTCCGGATGAATCTAGTAGGACTACTCAACTTTTTTACTCGACA
ACAACAGAAAGTTTTGTCGAAACGCCGATCCCCACAATACATCCCGAGCC
ACCAGCCACTACCACTTCAGTGATCCCAATAGAGAGCACCACATCCGTAA
CACAACCACCCATCTTGACGACACCAAAACCTGGATACTCCTATCGCACC
CCCATTTCCCCCACCAATGCAAGCTTTCTAGACCAT

BO12211.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG40198-RB 555 CG40198-PB 1..552 17..568 2760 100 Plus
CG40198-RC 555 CG40198-PC 1..552 17..568 2760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG40198-RB 669 CG40198-RB 28..580 16..568 2765 100 Plus
CG40198-RC 1567 CG40198-RC 28..580 16..568 2765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4161597..4162049 568..116 2265 100 Minus
3R 32079331 3R 4162107..4162208 117..16 510 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:45:02 has no hits.

BO12211.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:57 Download gff for BO12211.complete
Subject Subject Range Query Range Percent Splice Strand
CG40198-RA 267..828 9..569 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:32:42 Download gff for BO12211.complete
Subject Subject Range Query Range Percent Splice Strand
CG40198-RA 267..830 9..576 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:13:16 Download gff for BO12211.complete
Subject Subject Range Query Range Percent Splice Strand
CG40198-RC 34..580 22..570 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:57 Download gff for BO12211.complete
Subject Subject Range Query Range Percent Splice Strand
CG40198-RA 267..830 9..576 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:25:46 Download gff for BO12211.complete
Subject Subject Range Query Range Percent Splice Strand
CG40198-RC 34..580 22..570 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:25:46 Download gff for BO12211.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4161595..4162048 117..570 99 <- Minus
3R 4162108..4162202 22..116 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:13:16 Download gff for BO12211.complete
Subject Subject Range Query Range Percent Splice Strand
3RHet 2505361..2505814 117..570 99 <- Minus
3RHet 2505874..2505968 22..116 100   Minus

BO12211.pep Sequence

Translation from 16 to 586

> BO12211.pep
MLKTISIGVLIALSGAIIAEGKPVLIKVFAPSGGYSSASYQNTVGASPFT
SQLISGLISSKIQLLNSVLQTKSSSGGFRIGFNKSVNLFGPTSATSTTER
PVTHHTTEVNTDFTPDESSRTTQLFYSTTTESFVETPIPTIHPEPPATTT
SVIPIESTTSVTQPPILTTPKPGYSYRTPISPTNASFLDH

BO12211.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG40198-PB 184 CG40198-PB 1..184 1..184 929 100 Plus
CG40198-PC 184 CG40198-PC 1..184 1..184 929 100 Plus