Clone Sequence Records
BO12211.3prime Sequence
584 bp (583 high quality bases) assembled on 2006-04-20
> BO12211.3prime
ATGGTCTAGAAAGCTTGCATTGGTGGGGGAAATGGGGGTGCGATAGGAGT
ATCCAGGTTTTGGTGTCGTCAAGATGGGTGGTTGTGTTACGGATGTGGTG
CTCTCTATTGGGATCACTGAAGTGGTAGTGGCTGGTGGCTCGGGATGTAT
TGTGGGGATCGGCGTTTCGACAAAACTTTCTGTTGTTGTCGAGTAAAAAA
GTTGAGTAGTCCTACTAGATTCATCCGGAGTAAAGTCTGTGTTTACCTCG
GTGGTATGGTGTGTCACAGGCCTTTCGGTGGTGCTCGTGGCGCTTGTGGG
GCCAAATAAATTGACAGACTTATTGAAACCAATACGGAACCCCCCGGAAG
AAGACTTGGTCTGTAGCACGCTGTTCAACAGTTGAATTTTTGATGAGATA
AGACCAGAGATAAGCTGACTGGTGAAAGGCGATGCTCCCACTGTATTTTG
GTAACTGGCACTGGAGTAGCCACCGCTGGGAGCGAAAACCTTAATAAGGA
CAGGTTTTCCTTCTGCAATGATGGCCCCACTGAGGGCGATAAGAACACCA
ATCGATATAGTTTTCAACATGTCGACTGATAACT
BO12211.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 14:39:36 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:54:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40198-RB | 669 | CG40198-RB | 28..580 | 571..19 | 2765 | 100 | Minus |
CG40198-RC | 1567 | CG40198-RC | 28..580 | 571..19 | 2765 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:54:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4161597..4162049 | 19..471 | 2265 | 100 | Plus |
3R | 32079331 | 3R | 4162107..4162208 | 470..571 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:54:46 has no hits.
BO12211.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:50:01 Download gff for
BO12211.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40198-RC | 22..585 | 11..578 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:20:45 Download gff for
BO12211.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40198-RC | 22..585 | 11..578 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:20:45 Download gff for
BO12211.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4161592..4162048 | 11..470 | 99 | <- | Plus |
3R | 4162108..4162211 | 471..578 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:50:01 Download gff for
BO12211.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3RHet | 2505358..2505814 | 11..470 | 99 | <- | Plus |
3RHet | 2505874..2505977 | 471..578 | 96 | | Plus |
BO12211.5prime Sequence
584 bp (583 high quality bases) assembled on 2006-04-20
> BO12211.5prime
GAAGTTATCAGTCGACATGTTGAAAACTATATCGATTGGTGTTCTTATCG
CCCTCAGTGGGGCCATCATTGCAGAAGGAAAACCTGTCCTTATTAAGGTT
TTCGCTCCCAGCGGTGGCTACTCCAGTGCCAGTTACCAAAATACAGTGGG
AGCATCGCCTTTCACCAGTCAGCTTATCTCTGGTCTTATCTCATCAAAAA
TTCAACTGTTGAACAGCGTGCTACAGACCAAGTCTTCTTCCGGGGGGTTC
CGTATTGGTTTCAATAAGTCTGTCAATTTATTTGGCCCCACAAGCGCCAC
GAGCACCACCGAAAGGCCTGTGACACACCATACCACCGAGGTAAACACAG
ACTTTACTCCGGATGAATCTAGTAGGACTACTCAACTTTTTTACTCGACA
ACAACAGAAAGTTTTGTCGAAACGCCGATCCCCACAATACATCCCGAGCC
ACCAGCCACTACCACTTCAGTGATCCCAATAGAGAGCACCACATCCGTAA
CACAACCACCCATCTTGACGACACCAAAACCTGGATACTCCTATCGCACC
CCCATTTCCCCCACCAATGCAAGCTTTCTAGACC
BO12211.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 14:39:37 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:56:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40198-RB | 669 | CG40198-RB | 28..580 | 16..568 | 2765 | 100 | Plus |
CG40198-RC | 1567 | CG40198-RC | 28..580 | 16..568 | 2765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:56:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4161597..4162049 | 568..116 | 2265 | 100 | Minus |
3R | 32079331 | 3R | 4162107..4162208 | 117..16 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:56:08 has no hits.
BO12211.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:05:19 Download gff for
BO12211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40198-RC | 22..585 | 9..576 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:29:44 Download gff for
BO12211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40198-RC | 22..585 | 9..576 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:29:44 Download gff for
BO12211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4161592..4162048 | 117..576 | 99 | <- | Minus |
3R | 4162108..4162211 | 9..116 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:05:19 Download gff for
BO12211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3RHet | 2505358..2505814 | 117..576 | 99 | <- | Minus |
3RHet | 2505874..2505977 | 9..116 | 96 | | Minus |
BO12211.complete Sequence
586 bp assembled on 2006-10-11
GenBank Submission: KX794160
> BO12211.complete
GAAGTTATCAGTCGACATGTTGAAAACTATATCGATTGGTGTTCTTATCG
CCCTCAGTGGGGCCATCATTGCAGAAGGAAAACCTGTCCTTATTAAGGTT
TTCGCTCCCAGCGGTGGCTACTCCAGTGCCAGTTACCAAAATACAGTGGG
AGCATCGCCTTTCACCAGTCAGCTTATCTCTGGTCTTATCTCATCAAAAA
TTCAACTGTTGAACAGCGTGCTACAGACCAAGTCTTCTTCCGGGGGGTTC
CGTATTGGTTTCAATAAGTCTGTCAATTTATTTGGCCCCACAAGCGCCAC
GAGCACCACCGAAAGGCCTGTGACACACCATACCACCGAGGTAAACACAG
ACTTTACTCCGGATGAATCTAGTAGGACTACTCAACTTTTTTACTCGACA
ACAACAGAAAGTTTTGTCGAAACGCCGATCCCCACAATACATCCCGAGCC
ACCAGCCACTACCACTTCAGTGATCCCAATAGAGAGCACCACATCCGTAA
CACAACCACCCATCTTGACGACACCAAAACCTGGATACTCCTATCGCACC
CCCATTTCCCCCACCAATGCAAGCTTTCTAGACCAT
BO12211.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:45:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40198-RB | 555 | CG40198-PB | 1..552 | 17..568 | 2760 | 100 | Plus |
CG40198-RC | 555 | CG40198-PC | 1..552 | 17..568 | 2760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:45:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40198-RB | 669 | CG40198-RB | 28..580 | 16..568 | 2765 | 100 | Plus |
CG40198-RC | 1567 | CG40198-RC | 28..580 | 16..568 | 2765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:45:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4161597..4162049 | 568..116 | 2265 | 100 | Minus |
3R | 32079331 | 3R | 4162107..4162208 | 117..16 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:45:02 has no hits.
BO12211.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:57 Download gff for
BO12211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40198-RA | 267..828 | 9..569 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:32:42 Download gff for
BO12211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40198-RA | 267..830 | 9..576 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:13:16 Download gff for
BO12211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40198-RC | 34..580 | 22..570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:57 Download gff for
BO12211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40198-RA | 267..830 | 9..576 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:25:46 Download gff for
BO12211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40198-RC | 34..580 | 22..570 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:25:46 Download gff for
BO12211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4161595..4162048 | 117..570 | 99 | <- | Minus |
3R | 4162108..4162202 | 22..116 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:13:16 Download gff for
BO12211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3RHet | 2505361..2505814 | 117..570 | 99 | <- | Minus |
3RHet | 2505874..2505968 | 22..116 | 100 | | Minus |
BO12211.pep Sequence
Translation from 16 to 586
> BO12211.pep
MLKTISIGVLIALSGAIIAEGKPVLIKVFAPSGGYSSASYQNTVGASPFT
SQLISGLISSKIQLLNSVLQTKSSSGGFRIGFNKSVNLFGPTSATSTTER
PVTHHTTEVNTDFTPDESSRTTQLFYSTTTESFVETPIPTIHPEPPATTT
SVIPIESTTSVTQPPILTTPKPGYSYRTPISPTNASFLDH
BO12211.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40198-PB | 184 | CG40198-PB | 1..184 | 1..184 | 929 | 100 | Plus |
CG40198-PC | 184 | CG40198-PC | 1..184 | 1..184 | 929 | 100 | Plus |