Clone Sequence Records
BO12212.3prime Sequence
802 bp (753 high quality bases) assembled on 2006-04-20
> BO12212.3prime
ATGGTCTAGAAAGCTTGCTTTCTTCTTGGCATCCTTGAGGCCAGCGCCGG
CGTTGAACTTAAAGAATATGATGTCGCCATCCTCGACGGTGTAGTTGCGT
CCCTGTTGGCGATATTTGCCAGCGGCCTTGGCATTCGCCTCACTGCCCTC
CGCCTTGAAGTCCTCGAAGTGCATCACCTCGGCCATAATGAAGCCCTTCT
CGAAGTCGGTGTGAATGCGTCCGGCAGCCTGGGGAGCCTTGGTGCCCTTC
TGGATGGTCCAGGCCTTCACTTCATCCGGCCCGGCGGTGAAGAAGTACTC
CAGCTGCAGTCCCTTGTAGCCGGTCACAACGATCTTCTCCAGCATACTTT
TGCACTTGGTCTCCGTCTCGTAGGCCTTGCGCTCCAGTTCGTCCTTTTCG
GTCAGCTGGTGCTCGAAGGCGCCGGAGAAGGGAATGAGCAGTGCTCCGGG
ATCGTTCTTGTCGATCCATTCCTTGATCTTCGGCAGCCACTTGTTCTTCT
TGCGGATGAAGTCCTTGTCCGAAAGGTTCACCAGGTAGATGACCGGTTTG
GAGGTCAGGAACAGATACTTGTTCAAGGCCTCAATATCATGGGCATTCCA
GTCCTCGAAGCGCAGATGACGCTTCTGATCGATAAGGATATCCTTAATCT
TAAGCATCGAATCGTATTCGGGCTTGAGCTTCTTGTCGCCGCCGCGGGCC
ACCACCTTCTCCAGTTTGTCCAAGTTCTTGAGCAGATTCTCCTCGTCCTT
GAGGCGCAGCTCCTCGGAGATGATCTCCAGATCGCGCACCGGATCCACCT
CG
BO12212.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1354-PC | 1194 | CG1354-RC | 408..1191 | 802..19 | 3920 | 100 | Minus |
CG1354-PD | 1194 | CG1354-RD | 408..1191 | 802..19 | 3920 | 100 | Minus |
CG1354-PB | 1047 | CG1354-RB | 261..1044 | 802..19 | 3920 | 100 | Minus |
CG1354-PA | 1194 | CG1354-RA | 408..1191 | 802..19 | 3920 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:16:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1354-RE | 1491 | CG1354-RE | 512..1295 | 802..19 | 3920 | 100 | Minus |
CG1354-RA | 1498 | CG1354-RA | 522..1305 | 802..19 | 3920 | 100 | Minus |
CG1354-RB | 1257 | CG1354-RB | 281..1064 | 802..19 | 3920 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:16:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9781159..9781725 | 585..19 | 2835 | 100 | Minus |
X | 23542271 | X | 9780676..9780892 | 802..586 | 1085 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 13:16:38 has no hits.
BO12212.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:24 Download gff for
BO12212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1354-PA | 408..1194 | 16..802 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:28 Download gff for
BO12212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1354-PA | 408..1194 | 16..802 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:44:27 Download gff for
BO12212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1354-RB | 281..1064 | 19..802 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:27:07 Download gff for
BO12212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1354-RB | 281..1064 | 19..802 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:27:07 Download gff for
BO12212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9780676..9780892 | 586..802 | 100 | -> | Minus |
X | 9781159..9781730 | 16..585 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:44:27 Download gff for
BO12212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9674709..9674925 | 586..802 | 100 | -> | Minus |
arm_X | 9675192..9675763 | 16..585 | 99 | <- | Minus |
BO12212.5prime Sequence
813 bp (741 high quality bases) assembled on 2006-04-20
> BO12212.5prime
GAAGTTATCAGTCGACATGCCGCCCAAGAAGCACGACGAACCGGAGCGCA
AGCCGCTGATCGGCAGAATTGGAACGAATCTGAGAATCGGTATCGTTGGC
GTTCCCAACGTGGGCAAGTCCACTTTTTTCAACGTTCTGACCCAAAGTGC
CGCCCCCGCGGAGAACTTCCCCTTCTGCACCATCAAGCCGAATGAGAGTC
GTGTTCCGGTGCCCGATGAGCGTTTCGATTACCTGGTGGAGTACCACAAG
CCGGCCAGTGTGGTTCCTGCCTATTTGAACGTCGTGGACATTGCTGGCTT
GGTGAAGGGAGCCGCCGAGGGTCAGGGACTTGGCAACGACTTCCTCTCGC
ACATCAGCGCCTGCGATGCCATTTTCCACTTGTGCCGCGCCTTCGAGGAT
CCGGATGTGACCCACGTGGAGGGCGAGGTGGATCCGGTGCGCGATCTGGA
GATCATCTCCGAGGAGCTGCGCCTCAAGGACGAGGAGAATCTGCTCAAGA
ACTTGGACAAACTGGAGAAGGTGGTGGCCCGCGGCGGCGACAAGAAGCTC
AAGCCCGAATACGATTCGATGCTTAAGATTAAGGATATCCTTATCGATCA
GAAGCGTCATCTGCGCTTCGAGGACTGGAATGCCCATGATATTGAGGCCT
TGAACAAGTATCTGTTCCTGACCTCCAAACCGGTCATCTACCTGGTGACC
TTTCGGACAGGACTTCTCCGCAGAAGAACAGTGGTGCCGAAGATCAGGAT
GGATCGACAGAACGATCCGGAGCCTGCTCTTCCTTCTCGGCGCCTCGACA
CAGCTACCGAAAG
BO12212.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1354-PC | 1194 | CG1354-RC | 1..682 | 17..698 | 3410 | 100 | Plus |
CG1354-PD | 1194 | CG1354-RD | 1..682 | 17..698 | 3410 | 100 | Plus |
CG1354-PA | 1194 | CG1354-RA | 1..682 | 17..698 | 3410 | 100 | Plus |
CG1354-PB | 1047 | CG1354-RB | 35..535 | 198..698 | 2505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:07:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1354-RE | 1491 | CG1354-RE | 105..918 | 17..812 | 3620 | 97.8 | Plus |
CG1354-RA | 1498 | CG1354-RA | 115..928 | 17..812 | 3620 | 97.8 | Plus |
CG1354-RD | 1684 | CG1354-RD | 125..938 | 17..812 | 3620 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:07:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9780509..9780892 | 257..640 | 1920 | 100 | Plus |
X | 23542271 | X | 9779062..9779242 | 17..197 | 905 | 100 | Plus |
X | 23542271 | X | 9780241..9780301 | 198..258 | 305 | 100 | Plus |
X | 23542271 | X | 9781159..9781228 | 641..709 | 300 | 98.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:07:20 has no hits.
BO12212.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:25 Download gff for
BO12212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1354-PA | 1..801 | 17..801 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:30 Download gff for
BO12212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1354-PA | 1..801 | 17..801 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:10:22 Download gff for
BO12212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1354-RD | 115..925 | 7..801 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:08 Download gff for
BO12212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1354-RD | 115..925 | 7..801 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:08 Download gff for
BO12212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9779052..9779246 | 7..201 | 96 | -> | Plus |
X | 9780245..9780301 | 202..258 | 100 | -> | Plus |
X | 9780511..9780892 | 259..640 | 100 | -> | Plus |
X | 9781159..9781230 | 641..710 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:10:22 Download gff for
BO12212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9673085..9673279 | 7..201 | 96 | -> | Plus |
arm_X | 9674278..9674334 | 202..258 | 100 | -> | Plus |
arm_X | 9674544..9674925 | 259..640 | 100 | -> | Plus |
arm_X | 9675192..9675263 | 641..710 | 97 | -> | Plus |
BO12212.complete Sequence
1225 bp assembled on 2006-10-11
GenBank Submission: FJ632359
> BO12212.complete
GAAGTTATCAGTCGACATGCCGCCCAAGAAGCACGACGAACCGGAGCGCA
AGCCGCTGATCGGCAGAATTGGAACGAATCTGAGAATCGGTATCGTTGGC
GTTCCCAACGTGGGCAAGTCCACTTTTTTCAACGTTCTGACCCAAAGTGC
CGCCCCCGCGGAGAACTTCCCCTTCTGCACCATCAAGCCGAATGAGAGTC
GTGTTCCGGTGCCCGATGAGCGTTTCGATTACCTGGTGGAGTACCACAAG
CCGGCCAGTGTGGTTCCTGCCTATTTGAACGTCGTGGACATTGCTGGCTT
GGTGAAGGGAGCCGCCGAGGGTCAGGGACTTGGCAACGACTTCCTCTCGC
ACATCAGCGCCTGCGATGCCATTTTCCACTTGTGCCGCGCCTTCGAGGAT
CCGGATGTGACCCACGTGGAGGGCGAGGTGGATCCGGTGCGCGATCTGGA
GATCATCTCCGAGGAGCTGCGCCTCAAGGACGAGGAGAATCTGCTCAAGA
ACTTGGACAAACTGGAGAAGGTGGTGGCCCGCGGCGGCGACAAGAAGCTC
AAGCCCGAATACGATTCGATGCTTAAGATTAAGGATATCCTTATCGATCA
GAAGCGTCATCTGCGCTTCGAGGACTGGAATGCCCATGATATTGAGGCCT
TGAACAAGTATCTGTTCCTGACCTCCAAACCGGTCATCTACCTGGTGAAC
CTTTCGGACAAGGACTTCATCCGCAAGAAGAACAAGTGGCTGCCGAAGAT
CAAGGAATGGATCGACAAGAACGATCCCGGAGCACTGCTCATTCCCTTCT
CCGGCGCCTTCGAGCACCAGCTGACCGAAAAGGACGAACTGGAGCGCAAG
GCCTACGAGACGGAGACCAAGTGCAAAAGTATGCTGGAGAAGATCGTTGT
GACCGGCTACAAGGGACTGCAGCTGGAGTACTTCTTCACCGCCGGGCCGG
ATGAAGTGAAGGCCTGGACCATCCAGAAGGGCACCAAGGCTCCCCAGGCT
GCCGGACGCATTCACACCGACTTCGAGAAGGGCTTCATTATGGCCGAGGT
GATGCACTTCGAGGACTTCAAGGCGGAGGGCAGTGAGGCGAATGCCAAGG
CCGCTGGCAAATATCGCCAACAGGGACGCAACTACACCGTCGAGGATGGC
GACATCATATTCTTTAAGTTCAACGCCGGCGCTGGCCTCAAGGATGCCAA
GAAGAAAGCAAGCTTTCTAGACCAT
BO12212.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:10:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1354-RE | 1194 | CG1354-PE | 1..1191 | 17..1207 | 5955 | 100 | Plus |
CG1354-RA | 1194 | CG1354-PA | 1..1191 | 17..1207 | 5955 | 100 | Plus |
CG1354-RD | 1194 | CG1354-PD | 1..1191 | 17..1207 | 5955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:10:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1354-RE | 1491 | CG1354-RE | 105..1295 | 17..1207 | 5955 | 100 | Plus |
CG1354-RA | 1498 | CG1354-RA | 115..1305 | 17..1207 | 5955 | 100 | Plus |
CG1354-RD | 1684 | CG1354-RD | 125..1315 | 17..1207 | 5955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:10:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9781159..9781725 | 641..1207 | 2835 | 100 | Plus |
X | 23542271 | X | 9780509..9780892 | 257..640 | 1920 | 100 | Plus |
X | 23542271 | X | 9779062..9779242 | 17..197 | 905 | 100 | Plus |
X | 23542271 | X | 9780241..9780301 | 198..258 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:10:53 has no hits.
BO12212.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:58 Download gff for
BO12212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1354-RA | 1..1194 | 17..1210 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:32 Download gff for
BO12212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1354-RA | 101..1301 | 7..1207 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:54:13 Download gff for
BO12212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1354-RD | 125..1315 | 17..1209 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:58 Download gff for
BO12212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1354-RA | 101..1301 | 7..1207 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:58 Download gff for
BO12212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1354-RD | 125..1315 | 17..1209 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:58 Download gff for
BO12212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9779062..9779246 | 17..201 | 98 | -> | Plus |
X | 9780245..9780301 | 202..258 | 100 | -> | Plus |
X | 9780511..9780892 | 259..640 | 100 | -> | Plus |
X | 9781159..9781725 | 641..1209 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:54:13 Download gff for
BO12212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9673095..9673279 | 17..201 | 98 | -> | Plus |
arm_X | 9674278..9674334 | 202..258 | 100 | -> | Plus |
arm_X | 9674544..9674925 | 259..640 | 100 | -> | Plus |
arm_X | 9675192..9675758 | 641..1209 | 99 | | Plus |
BO12212.pep Sequence
Translation from 16 to 1225
> BO12212.pep
MPPKKHDEPERKPLIGRIGTNLRIGIVGVPNVGKSTFFNVLTQSAAPAEN
FPFCTIKPNESRVPVPDERFDYLVEYHKPASVVPAYLNVVDIAGLVKGAA
EGQGLGNDFLSHISACDAIFHLCRAFEDPDVTHVEGEVDPVRDLEIISEE
LRLKDEENLLKNLDKLEKVVARGGDKKLKPEYDSMLKIKDILIDQKRHLR
FEDWNAHDIEALNKYLFLTSKPVIYLVNLSDKDFIRKKNKWLPKIKEWID
KNDPGALLIPFSGAFEHQLTEKDELERKAYETETKCKSMLEKIVVTGYKG
LQLEYFFTAGPDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFED
FKAEGSEANAKAAGKYRQQGRNYTVEDGDIIFFKFNAGAGLKDAKKKASF
LDH
BO12212.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1354-PE | 397 | CG1354-PE | 1..397 | 1..397 | 2086 | 100 | Plus |
CG1354-PA | 397 | CG1354-PA | 1..397 | 1..397 | 2086 | 100 | Plus |
CG1354-PD | 397 | CG1354-PD | 1..397 | 1..397 | 2086 | 100 | Plus |
CG1354-PC | 397 | CG1354-PC | 1..397 | 1..397 | 2086 | 100 | Plus |
CG1354-PB | 348 | CG1354-PB | 13..348 | 62..397 | 1761 | 100 | Plus |