Clone BO12212 Report

Search the DGRC for BO12212

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:122
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptCG1354-RA
Protein status:BO12212.pep: validated full length
Sequenced Size:1225

Clone Sequence Records

BO12212.3prime Sequence

802 bp (753 high quality bases) assembled on 2006-04-20

> BO12212.3prime
ATGGTCTAGAAAGCTTGCTTTCTTCTTGGCATCCTTGAGGCCAGCGCCGG
CGTTGAACTTAAAGAATATGATGTCGCCATCCTCGACGGTGTAGTTGCGT
CCCTGTTGGCGATATTTGCCAGCGGCCTTGGCATTCGCCTCACTGCCCTC
CGCCTTGAAGTCCTCGAAGTGCATCACCTCGGCCATAATGAAGCCCTTCT
CGAAGTCGGTGTGAATGCGTCCGGCAGCCTGGGGAGCCTTGGTGCCCTTC
TGGATGGTCCAGGCCTTCACTTCATCCGGCCCGGCGGTGAAGAAGTACTC
CAGCTGCAGTCCCTTGTAGCCGGTCACAACGATCTTCTCCAGCATACTTT
TGCACTTGGTCTCCGTCTCGTAGGCCTTGCGCTCCAGTTCGTCCTTTTCG
GTCAGCTGGTGCTCGAAGGCGCCGGAGAAGGGAATGAGCAGTGCTCCGGG
ATCGTTCTTGTCGATCCATTCCTTGATCTTCGGCAGCCACTTGTTCTTCT
TGCGGATGAAGTCCTTGTCCGAAAGGTTCACCAGGTAGATGACCGGTTTG
GAGGTCAGGAACAGATACTTGTTCAAGGCCTCAATATCATGGGCATTCCA
GTCCTCGAAGCGCAGATGACGCTTCTGATCGATAAGGATATCCTTAATCT
TAAGCATCGAATCGTATTCGGGCTTGAGCTTCTTGTCGCCGCCGCGGGCC
ACCACCTTCTCCAGTTTGTCCAAGTTCTTGAGCAGATTCTCCTCGTCCTT
GAGGCGCAGCTCCTCGGAGATGATCTCCAGATCGCGCACCGGATCCACCT
CG

BO12212.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1354-PC 1194 CG1354-RC 408..1191 802..19 3920 100 Minus
CG1354-PD 1194 CG1354-RD 408..1191 802..19 3920 100 Minus
CG1354-PB 1047 CG1354-RB 261..1044 802..19 3920 100 Minus
CG1354-PA 1194 CG1354-RA 408..1191 802..19 3920 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:16:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG1354-RE 1491 CG1354-RE 512..1295 802..19 3920 100 Minus
CG1354-RA 1498 CG1354-RA 522..1305 802..19 3920 100 Minus
CG1354-RB 1257 CG1354-RB 281..1064 802..19 3920 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9781159..9781725 585..19 2835 100 Minus
X 23542271 X 9780676..9780892 802..586 1085 100 Minus
Blast to na_te.dros performed on 2015-02-08 13:16:38 has no hits.

BO12212.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:24 Download gff for BO12212.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1354-PA 408..1194 16..802 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:28 Download gff for BO12212.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1354-PA 408..1194 16..802 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:44:27 Download gff for BO12212.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1354-RB 281..1064 19..802 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:27:07 Download gff for BO12212.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1354-RB 281..1064 19..802 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:27:07 Download gff for BO12212.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9780676..9780892 586..802 100 -> Minus
X 9781159..9781730 16..585 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:44:27 Download gff for BO12212.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9674709..9674925 586..802 100 -> Minus
arm_X 9675192..9675763 16..585 99 <- Minus

BO12212.5prime Sequence

813 bp (741 high quality bases) assembled on 2006-04-20

> BO12212.5prime
GAAGTTATCAGTCGACATGCCGCCCAAGAAGCACGACGAACCGGAGCGCA
AGCCGCTGATCGGCAGAATTGGAACGAATCTGAGAATCGGTATCGTTGGC
GTTCCCAACGTGGGCAAGTCCACTTTTTTCAACGTTCTGACCCAAAGTGC
CGCCCCCGCGGAGAACTTCCCCTTCTGCACCATCAAGCCGAATGAGAGTC
GTGTTCCGGTGCCCGATGAGCGTTTCGATTACCTGGTGGAGTACCACAAG
CCGGCCAGTGTGGTTCCTGCCTATTTGAACGTCGTGGACATTGCTGGCTT
GGTGAAGGGAGCCGCCGAGGGTCAGGGACTTGGCAACGACTTCCTCTCGC
ACATCAGCGCCTGCGATGCCATTTTCCACTTGTGCCGCGCCTTCGAGGAT
CCGGATGTGACCCACGTGGAGGGCGAGGTGGATCCGGTGCGCGATCTGGA
GATCATCTCCGAGGAGCTGCGCCTCAAGGACGAGGAGAATCTGCTCAAGA
ACTTGGACAAACTGGAGAAGGTGGTGGCCCGCGGCGGCGACAAGAAGCTC
AAGCCCGAATACGATTCGATGCTTAAGATTAAGGATATCCTTATCGATCA
GAAGCGTCATCTGCGCTTCGAGGACTGGAATGCCCATGATATTGAGGCCT
TGAACAAGTATCTGTTCCTGACCTCCAAACCGGTCATCTACCTGGTGACC
TTTCGGACAGGACTTCTCCGCAGAAGAACAGTGGTGCCGAAGATCAGGAT
GGATCGACAGAACGATCCGGAGCCTGCTCTTCCTTCTCGGCGCCTCGACA
CAGCTACCGAAAG

BO12212.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG1354-PC 1194 CG1354-RC 1..682 17..698 3410 100 Plus
CG1354-PD 1194 CG1354-RD 1..682 17..698 3410 100 Plus
CG1354-PA 1194 CG1354-RA 1..682 17..698 3410 100 Plus
CG1354-PB 1047 CG1354-RB 35..535 198..698 2505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:07:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG1354-RE 1491 CG1354-RE 105..918 17..812 3620 97.8 Plus
CG1354-RA 1498 CG1354-RA 115..928 17..812 3620 97.8 Plus
CG1354-RD 1684 CG1354-RD 125..938 17..812 3620 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:07:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9780509..9780892 257..640 1920 100 Plus
X 23542271 X 9779062..9779242 17..197 905 100 Plus
X 23542271 X 9780241..9780301 198..258 305 100 Plus
X 23542271 X 9781159..9781228 641..709 300 98.6 Plus
Blast to na_te.dros performed on 2015-02-11 17:07:20 has no hits.

BO12212.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:25 Download gff for BO12212.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1354-PA 1..801 17..801 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:30 Download gff for BO12212.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1354-PA 1..801 17..801 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:10:22 Download gff for BO12212.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1354-RD 115..925 7..801 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:08 Download gff for BO12212.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1354-RD 115..925 7..801 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:08 Download gff for BO12212.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9779052..9779246 7..201 96 -> Plus
X 9780245..9780301 202..258 100 -> Plus
X 9780511..9780892 259..640 100 -> Plus
X 9781159..9781230 641..710 97 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:10:22 Download gff for BO12212.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9673085..9673279 7..201 96 -> Plus
arm_X 9674278..9674334 202..258 100 -> Plus
arm_X 9674544..9674925 259..640 100 -> Plus
arm_X 9675192..9675263 641..710 97 -> Plus

BO12212.complete Sequence

1225 bp assembled on 2006-10-11

GenBank Submission: FJ632359

> BO12212.complete
GAAGTTATCAGTCGACATGCCGCCCAAGAAGCACGACGAACCGGAGCGCA
AGCCGCTGATCGGCAGAATTGGAACGAATCTGAGAATCGGTATCGTTGGC
GTTCCCAACGTGGGCAAGTCCACTTTTTTCAACGTTCTGACCCAAAGTGC
CGCCCCCGCGGAGAACTTCCCCTTCTGCACCATCAAGCCGAATGAGAGTC
GTGTTCCGGTGCCCGATGAGCGTTTCGATTACCTGGTGGAGTACCACAAG
CCGGCCAGTGTGGTTCCTGCCTATTTGAACGTCGTGGACATTGCTGGCTT
GGTGAAGGGAGCCGCCGAGGGTCAGGGACTTGGCAACGACTTCCTCTCGC
ACATCAGCGCCTGCGATGCCATTTTCCACTTGTGCCGCGCCTTCGAGGAT
CCGGATGTGACCCACGTGGAGGGCGAGGTGGATCCGGTGCGCGATCTGGA
GATCATCTCCGAGGAGCTGCGCCTCAAGGACGAGGAGAATCTGCTCAAGA
ACTTGGACAAACTGGAGAAGGTGGTGGCCCGCGGCGGCGACAAGAAGCTC
AAGCCCGAATACGATTCGATGCTTAAGATTAAGGATATCCTTATCGATCA
GAAGCGTCATCTGCGCTTCGAGGACTGGAATGCCCATGATATTGAGGCCT
TGAACAAGTATCTGTTCCTGACCTCCAAACCGGTCATCTACCTGGTGAAC
CTTTCGGACAAGGACTTCATCCGCAAGAAGAACAAGTGGCTGCCGAAGAT
CAAGGAATGGATCGACAAGAACGATCCCGGAGCACTGCTCATTCCCTTCT
CCGGCGCCTTCGAGCACCAGCTGACCGAAAAGGACGAACTGGAGCGCAAG
GCCTACGAGACGGAGACCAAGTGCAAAAGTATGCTGGAGAAGATCGTTGT
GACCGGCTACAAGGGACTGCAGCTGGAGTACTTCTTCACCGCCGGGCCGG
ATGAAGTGAAGGCCTGGACCATCCAGAAGGGCACCAAGGCTCCCCAGGCT
GCCGGACGCATTCACACCGACTTCGAGAAGGGCTTCATTATGGCCGAGGT
GATGCACTTCGAGGACTTCAAGGCGGAGGGCAGTGAGGCGAATGCCAAGG
CCGCTGGCAAATATCGCCAACAGGGACGCAACTACACCGTCGAGGATGGC
GACATCATATTCTTTAAGTTCAACGCCGGCGCTGGCCTCAAGGATGCCAA
GAAGAAAGCAAGCTTTCTAGACCAT

BO12212.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:10:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG1354-RE 1194 CG1354-PE 1..1191 17..1207 5955 100 Plus
CG1354-RA 1194 CG1354-PA 1..1191 17..1207 5955 100 Plus
CG1354-RD 1194 CG1354-PD 1..1191 17..1207 5955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG1354-RE 1491 CG1354-RE 105..1295 17..1207 5955 100 Plus
CG1354-RA 1498 CG1354-RA 115..1305 17..1207 5955 100 Plus
CG1354-RD 1684 CG1354-RD 125..1315 17..1207 5955 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:10:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9781159..9781725 641..1207 2835 100 Plus
X 23542271 X 9780509..9780892 257..640 1920 100 Plus
X 23542271 X 9779062..9779242 17..197 905 100 Plus
X 23542271 X 9780241..9780301 198..258 305 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:10:53 has no hits.

BO12212.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:58 Download gff for BO12212.complete
Subject Subject Range Query Range Percent Splice Strand
CG1354-RA 1..1194 17..1210 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:32 Download gff for BO12212.complete
Subject Subject Range Query Range Percent Splice Strand
CG1354-RA 101..1301 7..1207 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:54:13 Download gff for BO12212.complete
Subject Subject Range Query Range Percent Splice Strand
CG1354-RD 125..1315 17..1209 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:58 Download gff for BO12212.complete
Subject Subject Range Query Range Percent Splice Strand
CG1354-RA 101..1301 7..1207 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:58 Download gff for BO12212.complete
Subject Subject Range Query Range Percent Splice Strand
CG1354-RD 125..1315 17..1209 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:58 Download gff for BO12212.complete
Subject Subject Range Query Range Percent Splice Strand
X 9779062..9779246 17..201 98 -> Plus
X 9780245..9780301 202..258 100 -> Plus
X 9780511..9780892 259..640 100 -> Plus
X 9781159..9781725 641..1209 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:54:13 Download gff for BO12212.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9673095..9673279 17..201 98 -> Plus
arm_X 9674278..9674334 202..258 100 -> Plus
arm_X 9674544..9674925 259..640 100 -> Plus
arm_X 9675192..9675758 641..1209 99   Plus

BO12212.pep Sequence

Translation from 16 to 1225

> BO12212.pep
MPPKKHDEPERKPLIGRIGTNLRIGIVGVPNVGKSTFFNVLTQSAAPAEN
FPFCTIKPNESRVPVPDERFDYLVEYHKPASVVPAYLNVVDIAGLVKGAA
EGQGLGNDFLSHISACDAIFHLCRAFEDPDVTHVEGEVDPVRDLEIISEE
LRLKDEENLLKNLDKLEKVVARGGDKKLKPEYDSMLKIKDILIDQKRHLR
FEDWNAHDIEALNKYLFLTSKPVIYLVNLSDKDFIRKKNKWLPKIKEWID
KNDPGALLIPFSGAFEHQLTEKDELERKAYETETKCKSMLEKIVVTGYKG
LQLEYFFTAGPDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFED
FKAEGSEANAKAAGKYRQQGRNYTVEDGDIIFFKFNAGAGLKDAKKKASF
LDH

BO12212.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG1354-PE 397 CG1354-PE 1..397 1..397 2086 100 Plus
CG1354-PA 397 CG1354-PA 1..397 1..397 2086 100 Plus
CG1354-PD 397 CG1354-PD 1..397 1..397 2086 100 Plus
CG1354-PC 397 CG1354-PC 1..397 1..397 2086 100 Plus
CG1354-PB 348 CG1354-PB 13..348 62..397 1761 100 Plus