Clone Sequence Records
BO12214.5prime Sequence
545 bp (544 high quality bases) assembled on 2006-04-20
> BO12214.5prime
GAAGTTATCAGTCGACATGGCCCACAAGTTCATCTGCTCCCTGCTCCTGA
TCGCAGCCATGGCTGCCGTTTCTGTTGCAGAGCCTACCAGATTCCGGGGA
CGATTTTCCCGCCTGCAGTTTGCCCGTCAGGAGCAGGCTCCAGGGGATCA
GGCAGTTCCGGCCGACCCCGCCGTGGATATTGCACCTACGCCGGCCTCAG
CCCCTTATCCGCCAGCAGGAGTGACACCGGAGGTGCCCTTCGACCTGCCC
ACGGAGACTGAAGCGCAACCTGATCTTACCTACGGACCCCCAGATGAGCC
CGACAACACCTACGGCCCTCCCGATAACACTTACGGACCACCTGCTGAGC
CGGAAAACACCTATGGACCGCCGGCTGATGGCCCAGTGGACCAGGCCCCT
GCTGCCGATCCCGTGCCCGCCGGCTTGATCCAGCCTCGTAACGAACGCCT
CCTCAGTCGTCGTCCGACCCCAGAGAAGCTTCGATCCGCTCAGATTATCC
GCTCTGGATCAGTTCTGGTGTACACCATCGCAAGCTTTCTAGACC
BO12214.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14568-PA | 516 | CG14568-RA | 1..513 | 17..529 | 2565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:52:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14568-RA | 682 | CG14568-RA | 34..548 | 15..529 | 2575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:52:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21732940..21733454 | 529..15 | 2575 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:52:24 has no hits.
BO12214.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:29 Download gff for
BO12214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14568-PA | 1..516 | 17..532 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:35 Download gff for
BO12214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14568-PA | 1..516 | 17..532 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:05:02 Download gff for
BO12214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14568-RA | 22..552 | 3..533 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:43:43 Download gff for
BO12214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14568-RA | 22..552 | 3..533 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:43:43 Download gff for
BO12214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21732935..21733466 | 3..533 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:05:02 Download gff for
BO12214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21726035..21726566 | 3..533 | 98 | | Minus |
BO12214.3prime Sequence
545 bp (544 high quality bases) assembled on 2006-04-20
> BO12214.3prime
ATGGTCTAGAAAGCTTGCGATGGTGTACACCAGAACTGATCCAGAGCGGA
TAATCTGAGCGGATCGAAGCTTCTCTGGGGTCGGACGACGACTGAGGAGG
CGTTCGTTACGAGGCTGGATCAAGCCGGCGGGCACGGGATCGGCAGCAGG
GGCCTGGTCCACTGGGCCATCAGCCGGCGGTCCATAGGTGTTTTCCGGCT
CAGCAGGTGGTCCGTAAGTGTTATCGGGAGGGCCGTAGGTGTTGTCGGGC
TCATCTGGGGGTCCGTAGGTAAGATCAGGTTGCGCTTCAGTCTCCGTGGG
CAGGTCGAAGGGCACCTCCGGTGTCACTCCTGCTGGCGGATAAGGGGCTG
AGGCCGGCGTAGGTGCAATATCCACGGCGGGGTCGGCCGGAACTGCCTGA
TCCCCTGGAGCCTGCTCCTGACGGGCAAACTGCAGGCGGGAAAATCGTCC
CCGGAATCTGGTAGGCTCTGCAACAGAAACGGCAGCCATGGCTGCGATCA
GGAGCAGGGAGCAGATGAACTTGTGGGCCATGTCGACTGATAACT
BO12214.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14568-PA | 516 | CG14568-RA | 1..513 | 531..19 | 2565 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 10:29:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14568-RA | 682 | CG14568-RA | 34..548 | 533..19 | 2575 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 10:29:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21732940..21733454 | 19..533 | 2575 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 10:29:05 has no hits.
BO12214.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:28 Download gff for
BO12214.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14568-PA | 1..516 | 16..531 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:33 Download gff for
BO12214.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14568-PA | 1..516 | 16..531 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 11:26:01 Download gff for
BO12214.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14568-RA | 22..552 | 15..545 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 12:37:16 Download gff for
BO12214.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14568-RA | 22..552 | 15..545 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:37:16 Download gff for
BO12214.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21732935..21733466 | 15..545 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:26:01 Download gff for
BO12214.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21726035..21726566 | 15..545 | 98 | | Plus |
BO12214.complete Sequence
547 bp assembled on 2006-10-11
GenBank Submission: FJ632360
> BO12214.complete
GAAGTTATCAGTCGACATGGCCCACAAGTTCATCTGCTCCCTGCTCCTGA
TCGCAGCCATGGCTGCCGTTTCTGTTGCAGAGCCTACCAGATTCCGGGGA
CGATTTTCCCGCCTGCAGTTTGCCCGTCAGGAGCAGGCTCCAGGGGATCA
GGCAGTTCCGGCCGACCCCGCCGTGGATATTGCACCTACGCCGGCCTCAG
CCCCTTATCCGCCAGCAGGAGTGACACCGGAGGTGCCCTTCGACCTGCCC
ACGGAGACTGAAGCGCAACCTGATCTTACCTACGGACCCCCAGATGAGCC
CGACAACACCTACGGCCCTCCCGATAACACTTACGGACCACCTGCTGAGC
CGGAAAACACCTATGGACCGCCGGCTGATGGCCCAGTGGACCAGGCCCCT
GCTGCCGATCCCGTGCCCGCCGGCTTGATCCAGCCTCGTAACGAACGCCT
CCTCAGTCGTCGTCCGACCCCAGAGAAGCTTCGATCCGCTCAGATTATCC
GCTCTGGATCAGTTCTGGTGTACACCATCGCAAGCTTTCTAGACCAT
BO12214.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:13:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14568-RA | 516 | CG14568-PA | 1..513 | 17..529 | 2565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14568-RA | 682 | CG14568-RA | 34..548 | 15..529 | 2575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21732940..21733454 | 529..15 | 2575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:13:55 has no hits.
BO12214.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:18 Download gff for
BO12214.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14568-RA | 1..516 | 17..532 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:21 Download gff for
BO12214.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14568-RA | 19..549 | 3..533 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:12 Download gff for
BO12214.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14568-RA | 36..548 | 17..531 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:18 Download gff for
BO12214.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14568-RA | 19..549 | 3..533 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:58 Download gff for
BO12214.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14568-RA | 36..548 | 17..531 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:58 Download gff for
BO12214.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21732937..21733452 | 17..531 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:12 Download gff for
BO12214.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21726037..21726552 | 17..531 | 99 | | Minus |
BO12214.pep Sequence
Translation from 16 to 547
> BO12214.pep
MAHKFICSLLLIAAMAAVSVAEPTRFRGRFSRLQFARQEQAPGDQAVPAD
PAVDIAPTPASAPYPPAGVTPEVPFDLPTETEAQPDLTYGPPDEPDNTYG
PPDNTYGPPAEPENTYGPPADGPVDQAPAADPVPAGLIQPRNERLLSRRP
TPEKLRSAQIIRSGSVLVYTIASFLDH
BO12214.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14568-PA | 171 | CG14568-PA | 1..171 | 1..171 | 905 | 100 | Plus |
| CG14569-PA | 195 | CG14569-PA | 11..114 | 10..139 | 217 | 42.5 | Plus |
| CG14570-PA | 228 | CG14570-PA | 14..166 | 6..159 | 199 | 33.7 | Plus |
| CG14566-PB | 166 | CG14566-PB | 6..121 | 9..126 | 163 | 40.6 | Plus |
| CG14566-PA | 166 | CG14566-PA | 6..121 | 9..126 | 163 | 40.6 | Plus |
