Clone Sequence Records
BO12215.3prime Sequence
860 bp (775 high quality bases) assembled on 2006-04-20
> BO12215.3prime
ATGGTCTAGAAAGCTTGCAAATTTGCCGCTGCGCTTGCGTGCAGTGTACT
TTGTGTCAGGACGGGTTTCCAACCCCTGGCGACGTCGACGCTCTTTCTTG
GCTAGGATCCAATCGCGGGATTTCTTTGGCGCTTTTCCCCGAGCCTCACG
GCAAGCATCACGTTTCTTTATATAGTTTACACGACGTTCCTCTTCAGGTG
AGCCCAAAGCCTGCGGCAGCTCAGCAGATCCTCCAGTCATGAGCACCAGG
TAGTACTTCTTAGCCTTGGCAGAGTTTGGATAGTCGACAACCAATCCTCC
GTAGAATCCCGCCTTCATGGCTTGCGAGGTTACCATCTCGATCTGATCGG
AGTTCTCCGGATAAAATTGAAAGACAGCTCGCGCGGTGCGTGTCAGACAG
GAAAACAAGGTGGTAAAGAACTTCAGCAGGCGCTTGTGGGGATTGTGATA
CGACTTGTCCGCATTGCAGAGCCATTGGAGGGCAGAGATCGAGATGGCGC
CGTCGAAAGTGCCCGGCTTAAAGGGCATTCCCTCGCCCATGTCTCCCAGA
ATGACATCCCCAGCAACCTCGCGTTCCACGGCGATATCGAGCATAGACTT
GGAAATATCTATGCCGATCCACATGTGCTCGCTGTCCTCAAGAACGCTAC
CTGAGAGTCCAGAACCACAGCCGATGTCCAAAATCAACCGAGACTCATCA
TCATCCGGGAGCGCCAATAGTTCCAAGGCACGTTCGGCCATTTCTACTTG
GATCTCAATGATGCGGGTGTTTGTGGAATATTTCTTGGCCTCATCATCGT
TGTAAAAAATTTCTGGCGGCGCCGAATGCTCTGGTCTTCTGGCCATGTCG
ACTGATAACT
BO12215.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10903-PA | 831 | CG10903-RA | 1..828 | 846..19 | 4115 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:26:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10903-RB | 1164 | CG10903-RB | 158..985 | 846..19 | 4125 | 99.9 | Minus |
CG10903-RA | 1124 | CG10903-RA | 118..945 | 846..19 | 4125 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:26:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8031146..8031712 | 769..203 | 2835 | 100 | Minus |
3R | 32079331 | 3R | 8031781..8031966 | 204..19 | 930 | 100 | Minus |
3R | 32079331 | 3R | 8030944..8030982 | 846..808 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 12:26:48 has no hits.
BO12215.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:30 Download gff for
BO12215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10903-PA | 1..831 | 16..846 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:37 Download gff for
BO12215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10903-PA | 1..831 | 16..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 00:00:04 Download gff for
BO12215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10903-RA | 116..949 | 15..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:04:52 Download gff for
BO12215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10903-RA | 116..949 | 15..849 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:04:52 Download gff for
BO12215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8030942..8030982 | 808..849 | 97 | -> | Minus |
3R | 8031046..8031083 | 770..807 | 97 | -> | Minus |
3R | 8031146..8031711 | 204..769 | 100 | -> | Minus |
3R | 8031782..8031970 | 15..203 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 00:00:04 Download gff for
BO12215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3856664..3856704 | 808..849 | 97 | -> | Minus |
arm_3R | 3856768..3856805 | 770..807 | 97 | -> | Minus |
arm_3R | 3856868..3857433 | 204..769 | 100 | -> | Minus |
arm_3R | 3857504..3857692 | 15..203 | 98 | | Minus |
BO12215.5prime Sequence
860 bp (806 high quality bases) assembled on 2006-04-20
> BO12215.5prime
GAAGTTATCAGTCGACATGGCCAGAAGACCAGAGCATTCGGCGCCGCCAG
AAATTTTCTACAACGATGATGAGGCCAAGAAATATTCCACAAACACCCGC
ATCATTGAGATCCAAGTAGAAATGGCCGAACGTGCCTTGGAACTATTGGC
GCTCCCGGATGATGATGAGTCTCGGTTGATTTTGGACATCGGCTGTGGTT
CTGGACTCTCAGGTAGCGTTCTTGAGGACAGCGAGCACATGTGGATCGGC
ATAGATATTTCCAAGTCTATGCTCGATATCGCCGTGGAACGCGAGGTTGC
TGGGGATGTCATTCTGGGAGACATGGGCGAGGGAATGCCCTTTAAGCCGG
GCACTTTCGACGGCGCCATCTCGATCTCTGCCCTCCAATGGCTCTGCAAT
GCGGACAAGTCGTATCACAATCCCCACAAGCGCCTGCTGAAGTTCTTTAC
CACCTTGTTTTCCTGTCTGACACGCACCGCGCGAGCTGTCTTTCAATTTT
ATCCGGAGAACTCCGATCAGATCGAGATGGTAACCTCGCAAGCCATGAAG
GCGGGATTCTACGGAGGATTGGTTGTCGACTATCCAAACTCTGCCAAGGC
TAAGAAGTACTACCTGGTGCTCATGACTGGAGGATCTGCTGAGCTGCCGC
AGGCTTTGGGCTCACCTGAAGAGGAACGTCGTGTAAACTATATAAAGAAA
CGTGATGCTTGCCGTGAGGCTCGGGGAAAAGCGCCAAAGAAATCCCGCGA
TTGGATCCTAGCCAAGAAAGAGCGTCGACGTCGCCAGGGGTTGGAAACCC
GTCCTGACACAAAGTACACTGCACGCAAGCGCAGCGGCAAATTTGCAAGC
TTTCTAGACC
BO12215.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10903-PA | 831 | CG10903-RA | 1..828 | 17..844 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:21:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10903-RB | 1164 | CG10903-RB | 158..985 | 17..844 | 4140 | 100 | Plus |
CG10903-RA | 1124 | CG10903-RA | 118..945 | 17..844 | 4140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:21:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8031146..8031712 | 94..660 | 2835 | 100 | Plus |
3R | 32079331 | 3R | 8031781..8031966 | 659..844 | 930 | 100 | Plus |
3R | 32079331 | 3R | 8030944..8030982 | 17..55 | 195 | 100 | Plus |
3R | 32079331 | 3R | 8031046..8031083 | 56..93 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:21:28 has no hits.
BO12215.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:31 Download gff for
BO12215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10903-PA | 1..831 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:39 Download gff for
BO12215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10903-PA | 1..831 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:22:32 Download gff for
BO12215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10903-RA | 116..949 | 14..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:28:39 Download gff for
BO12215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10903-RA | 116..949 | 14..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:28:39 Download gff for
BO12215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8030942..8030982 | 14..55 | 97 | -> | Plus |
3R | 8031046..8031083 | 56..93 | 100 | -> | Plus |
3R | 8031146..8031711 | 94..659 | 100 | -> | Plus |
3R | 8031782..8031970 | 660..848 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:22:32 Download gff for
BO12215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3856664..3856704 | 14..55 | 97 | -> | Plus |
arm_3R | 3856768..3856805 | 56..93 | 100 | -> | Plus |
arm_3R | 3856868..3857433 | 94..659 | 100 | -> | Plus |
arm_3R | 3857504..3857692 | 660..848 | 98 | | Plus |
BO12215.complete Sequence
862 bp assembled on 2006-10-11
GenBank Submission: FJ632361
> BO12215.complete
GAAGTTATCAGTCGACATGGCCAGAAGACCAGAGCATTCGGCGCCGCCAG
AAATTTTCTACAACGATGATGAGGCCAAGAAATATTCCACAAACACCCGC
ATCATTGAGATCCAAGTAGAAATGGCCGAACGTGCCTTGGAACTATTGGC
GCTCCCGGATGATGATGAGTCTCGGTTGATTTTGGACATCGGCTGTGGTT
CTGGACTCTCAGGTAGCGTTCTTGAGGACAGCGAGCACATGTGGATCGGC
ATAGATATTTCCAAGTCTATGCTCGATATCGCCGTGGAACGCGAGGTTGC
TGGGGATGTCATTCTGGGAGACATGGGCGAGGGAATGCCCTTTAAGCCGG
GCACTTTCGACGGCGCCATCTCGATCTCTGCCCTCCAATGGCTCTGCAAT
GCGGACAAGTCGTATCACAATCCCCACAAGCGCCTGCTGAAGTTCTTTAC
CACCTTGTTTTCCTGTCTGACACGCACCGCGCGAGCTGTCTTTCAATTTT
ATCCGGAGAACTCCGATCAGATCGAGATGGTAACCTCGCAAGCCATGAAG
GCGGGATTCTACGGAGGATTGGTTGTCGACTATCCAAACTCTGCCAAGGC
TAAGAAGTACTACCTGGTGCTCATGACTGGAGGATCTGCTGAGCTGCCGC
AGGCTTTGGGCTCACCTGAAGAGGAACGTCGTGTAAACTATATAAAGAAA
CGTGATGCTTGCCGTGAGGCTCGGGGAAAAGCGCCAAAGAAATCCCGCGA
TTGGATCCTAGCCAAGAAAGAGCGTCGACGTCGCCAGGGGTTGGAAACCC
GTCCTGACACAAAGTACACTGCACGCAAGCGCAGCGGCAAATTTGCAAGC
TTTCTAGACCAT
BO12215.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:57:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10903-RB | 831 | CG10903-PB | 1..828 | 17..844 | 4140 | 100 | Plus |
CG10903-RA | 831 | CG10903-PA | 1..828 | 17..844 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:57:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10903-RB | 1164 | CG10903-RB | 158..985 | 17..844 | 4140 | 100 | Plus |
CG10903-RA | 1124 | CG10903-RA | 118..945 | 17..844 | 4140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:57:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8031146..8031712 | 94..660 | 2835 | 100 | Plus |
3R | 32079331 | 3R | 8031781..8031966 | 659..844 | 930 | 100 | Plus |
3R | 32079331 | 3R | 8030944..8030982 | 17..55 | 195 | 100 | Plus |
3R | 32079331 | 3R | 8031046..8031083 | 56..93 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:57:36 has no hits.
BO12215.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:59 Download gff for
BO12215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10903-RA | 1..831 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:33 Download gff for
BO12215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10903-RA | 114..947 | 14..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:42:06 Download gff for
BO12215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10903-RA | 118..945 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:00 Download gff for
BO12215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10903-RA | 114..947 | 14..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:47:02 Download gff for
BO12215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10903-RA | 118..945 | 17..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:47:02 Download gff for
BO12215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8030944..8030982 | 17..55 | 100 | -> | Plus |
3R | 8031046..8031083 | 56..93 | 100 | -> | Plus |
3R | 8031146..8031711 | 94..659 | 100 | -> | Plus |
3R | 8031782..8031966 | 660..846 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:42:06 Download gff for
BO12215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3856666..3856704 | 17..55 | 100 | -> | Plus |
arm_3R | 3856768..3856805 | 56..93 | 100 | -> | Plus |
arm_3R | 3856868..3857433 | 94..659 | 100 | -> | Plus |
arm_3R | 3857504..3857688 | 660..846 | 98 | | Plus |
BO12215.pep Sequence
Translation from 16 to 862
> BO12215.pep
MARRPEHSAPPEIFYNDDEAKKYSTNTRIIEIQVEMAERALELLALPDDD
ESRLILDIGCGSGLSGSVLEDSEHMWIGIDISKSMLDIAVEREVAGDVIL
GDMGEGMPFKPGTFDGAISISALQWLCNADKSYHNPHKRLLKFFTTLFSC
LTRTARAVFQFYPENSDQIEMVTSQAMKAGFYGGLVVDYPNSAKAKKYYL
VLMTGGSAELPQALGSPEEERRVNYIKKRDACREARGKAPKKSRDWILAK
KERRRRQGLETRPDTKYTARKRSGKFASFLDH
BO12215.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10903-PB | 276 | CG10903-PB | 1..276 | 1..276 | 1433 | 100 | Plus |
CG10903-PA | 276 | CG10903-PA | 1..276 | 1..276 | 1433 | 100 | Plus |