Clone BO12215 Report

Search the DGRC for BO12215

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:122
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptCG10903-RA
Protein status:BO12215.pep: validated full length
Sequenced Size:862

Clone Sequence Records

BO12215.3prime Sequence

860 bp (775 high quality bases) assembled on 2006-04-20

> BO12215.3prime
ATGGTCTAGAAAGCTTGCAAATTTGCCGCTGCGCTTGCGTGCAGTGTACT
TTGTGTCAGGACGGGTTTCCAACCCCTGGCGACGTCGACGCTCTTTCTTG
GCTAGGATCCAATCGCGGGATTTCTTTGGCGCTTTTCCCCGAGCCTCACG
GCAAGCATCACGTTTCTTTATATAGTTTACACGACGTTCCTCTTCAGGTG
AGCCCAAAGCCTGCGGCAGCTCAGCAGATCCTCCAGTCATGAGCACCAGG
TAGTACTTCTTAGCCTTGGCAGAGTTTGGATAGTCGACAACCAATCCTCC
GTAGAATCCCGCCTTCATGGCTTGCGAGGTTACCATCTCGATCTGATCGG
AGTTCTCCGGATAAAATTGAAAGACAGCTCGCGCGGTGCGTGTCAGACAG
GAAAACAAGGTGGTAAAGAACTTCAGCAGGCGCTTGTGGGGATTGTGATA
CGACTTGTCCGCATTGCAGAGCCATTGGAGGGCAGAGATCGAGATGGCGC
CGTCGAAAGTGCCCGGCTTAAAGGGCATTCCCTCGCCCATGTCTCCCAGA
ATGACATCCCCAGCAACCTCGCGTTCCACGGCGATATCGAGCATAGACTT
GGAAATATCTATGCCGATCCACATGTGCTCGCTGTCCTCAAGAACGCTAC
CTGAGAGTCCAGAACCACAGCCGATGTCCAAAATCAACCGAGACTCATCA
TCATCCGGGAGCGCCAATAGTTCCAAGGCACGTTCGGCCATTTCTACTTG
GATCTCAATGATGCGGGTGTTTGTGGAATATTTCTTGGCCTCATCATCGT
TGTAAAAAATTTCTGGCGGCGCCGAATGCTCTGGTCTTCTGGCCATGTCG
ACTGATAACT

BO12215.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG10903-PA 831 CG10903-RA 1..828 846..19 4115 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG10903-RB 1164 CG10903-RB 158..985 846..19 4125 99.9 Minus
CG10903-RA 1124 CG10903-RA 118..945 846..19 4125 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8031146..8031712 769..203 2835 100 Minus
3R 32079331 3R 8031781..8031966 204..19 930 100 Minus
3R 32079331 3R 8030944..8030982 846..808 195 100 Minus
Blast to na_te.dros performed on 2015-01-31 12:26:48 has no hits.

BO12215.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:30 Download gff for BO12215.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10903-PA 1..831 16..846 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:37 Download gff for BO12215.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10903-PA 1..831 16..846 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 00:00:04 Download gff for BO12215.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10903-RA 116..949 15..849 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:04:52 Download gff for BO12215.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10903-RA 116..949 15..849 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:04:52 Download gff for BO12215.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8030942..8030982 808..849 97 -> Minus
3R 8031046..8031083 770..807 97 -> Minus
3R 8031146..8031711 204..769 100 -> Minus
3R 8031782..8031970 15..203 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 00:00:04 Download gff for BO12215.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3856664..3856704 808..849 97 -> Minus
arm_3R 3856768..3856805 770..807 97 -> Minus
arm_3R 3856868..3857433 204..769 100 -> Minus
arm_3R 3857504..3857692 15..203 98   Minus

BO12215.5prime Sequence

860 bp (806 high quality bases) assembled on 2006-04-20

> BO12215.5prime
GAAGTTATCAGTCGACATGGCCAGAAGACCAGAGCATTCGGCGCCGCCAG
AAATTTTCTACAACGATGATGAGGCCAAGAAATATTCCACAAACACCCGC
ATCATTGAGATCCAAGTAGAAATGGCCGAACGTGCCTTGGAACTATTGGC
GCTCCCGGATGATGATGAGTCTCGGTTGATTTTGGACATCGGCTGTGGTT
CTGGACTCTCAGGTAGCGTTCTTGAGGACAGCGAGCACATGTGGATCGGC
ATAGATATTTCCAAGTCTATGCTCGATATCGCCGTGGAACGCGAGGTTGC
TGGGGATGTCATTCTGGGAGACATGGGCGAGGGAATGCCCTTTAAGCCGG
GCACTTTCGACGGCGCCATCTCGATCTCTGCCCTCCAATGGCTCTGCAAT
GCGGACAAGTCGTATCACAATCCCCACAAGCGCCTGCTGAAGTTCTTTAC
CACCTTGTTTTCCTGTCTGACACGCACCGCGCGAGCTGTCTTTCAATTTT
ATCCGGAGAACTCCGATCAGATCGAGATGGTAACCTCGCAAGCCATGAAG
GCGGGATTCTACGGAGGATTGGTTGTCGACTATCCAAACTCTGCCAAGGC
TAAGAAGTACTACCTGGTGCTCATGACTGGAGGATCTGCTGAGCTGCCGC
AGGCTTTGGGCTCACCTGAAGAGGAACGTCGTGTAAACTATATAAAGAAA
CGTGATGCTTGCCGTGAGGCTCGGGGAAAAGCGCCAAAGAAATCCCGCGA
TTGGATCCTAGCCAAGAAAGAGCGTCGACGTCGCCAGGGGTTGGAAACCC
GTCCTGACACAAAGTACACTGCACGCAAGCGCAGCGGCAAATTTGCAAGC
TTTCTAGACC

BO12215.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG10903-PA 831 CG10903-RA 1..828 17..844 4140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG10903-RB 1164 CG10903-RB 158..985 17..844 4140 100 Plus
CG10903-RA 1124 CG10903-RA 118..945 17..844 4140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8031146..8031712 94..660 2835 100 Plus
3R 32079331 3R 8031781..8031966 659..844 930 100 Plus
3R 32079331 3R 8030944..8030982 17..55 195 100 Plus
3R 32079331 3R 8031046..8031083 56..93 190 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:21:28 has no hits.

BO12215.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:31 Download gff for BO12215.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10903-PA 1..831 17..847 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:39 Download gff for BO12215.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10903-PA 1..831 17..847 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:22:32 Download gff for BO12215.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10903-RA 116..949 14..848 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:28:39 Download gff for BO12215.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10903-RA 116..949 14..848 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:28:39 Download gff for BO12215.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8030942..8030982 14..55 97 -> Plus
3R 8031046..8031083 56..93 100 -> Plus
3R 8031146..8031711 94..659 100 -> Plus
3R 8031782..8031970 660..848 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:22:32 Download gff for BO12215.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3856664..3856704 14..55 97 -> Plus
arm_3R 3856768..3856805 56..93 100 -> Plus
arm_3R 3856868..3857433 94..659 100 -> Plus
arm_3R 3857504..3857692 660..848 98   Plus

BO12215.complete Sequence

862 bp assembled on 2006-10-11

GenBank Submission: FJ632361

> BO12215.complete
GAAGTTATCAGTCGACATGGCCAGAAGACCAGAGCATTCGGCGCCGCCAG
AAATTTTCTACAACGATGATGAGGCCAAGAAATATTCCACAAACACCCGC
ATCATTGAGATCCAAGTAGAAATGGCCGAACGTGCCTTGGAACTATTGGC
GCTCCCGGATGATGATGAGTCTCGGTTGATTTTGGACATCGGCTGTGGTT
CTGGACTCTCAGGTAGCGTTCTTGAGGACAGCGAGCACATGTGGATCGGC
ATAGATATTTCCAAGTCTATGCTCGATATCGCCGTGGAACGCGAGGTTGC
TGGGGATGTCATTCTGGGAGACATGGGCGAGGGAATGCCCTTTAAGCCGG
GCACTTTCGACGGCGCCATCTCGATCTCTGCCCTCCAATGGCTCTGCAAT
GCGGACAAGTCGTATCACAATCCCCACAAGCGCCTGCTGAAGTTCTTTAC
CACCTTGTTTTCCTGTCTGACACGCACCGCGCGAGCTGTCTTTCAATTTT
ATCCGGAGAACTCCGATCAGATCGAGATGGTAACCTCGCAAGCCATGAAG
GCGGGATTCTACGGAGGATTGGTTGTCGACTATCCAAACTCTGCCAAGGC
TAAGAAGTACTACCTGGTGCTCATGACTGGAGGATCTGCTGAGCTGCCGC
AGGCTTTGGGCTCACCTGAAGAGGAACGTCGTGTAAACTATATAAAGAAA
CGTGATGCTTGCCGTGAGGCTCGGGGAAAAGCGCCAAAGAAATCCCGCGA
TTGGATCCTAGCCAAGAAAGAGCGTCGACGTCGCCAGGGGTTGGAAACCC
GTCCTGACACAAAGTACACTGCACGCAAGCGCAGCGGCAAATTTGCAAGC
TTTCTAGACCAT

BO12215.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG10903-RB 831 CG10903-PB 1..828 17..844 4140 100 Plus
CG10903-RA 831 CG10903-PA 1..828 17..844 4140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG10903-RB 1164 CG10903-RB 158..985 17..844 4140 100 Plus
CG10903-RA 1124 CG10903-RA 118..945 17..844 4140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:57:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8031146..8031712 94..660 2835 100 Plus
3R 32079331 3R 8031781..8031966 659..844 930 100 Plus
3R 32079331 3R 8030944..8030982 17..55 195 100 Plus
3R 32079331 3R 8031046..8031083 56..93 190 100 Plus
Blast to na_te.dros performed on 2014-11-26 21:57:36 has no hits.

BO12215.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:59 Download gff for BO12215.complete
Subject Subject Range Query Range Percent Splice Strand
CG10903-RA 1..831 17..847 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:33 Download gff for BO12215.complete
Subject Subject Range Query Range Percent Splice Strand
CG10903-RA 114..947 14..848 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:42:06 Download gff for BO12215.complete
Subject Subject Range Query Range Percent Splice Strand
CG10903-RA 118..945 17..846 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:00 Download gff for BO12215.complete
Subject Subject Range Query Range Percent Splice Strand
CG10903-RA 114..947 14..848 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:47:02 Download gff for BO12215.complete
Subject Subject Range Query Range Percent Splice Strand
CG10903-RA 118..945 17..846 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:47:02 Download gff for BO12215.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8030944..8030982 17..55 100 -> Plus
3R 8031046..8031083 56..93 100 -> Plus
3R 8031146..8031711 94..659 100 -> Plus
3R 8031782..8031966 660..846 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:42:06 Download gff for BO12215.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3856666..3856704 17..55 100 -> Plus
arm_3R 3856768..3856805 56..93 100 -> Plus
arm_3R 3856868..3857433 94..659 100 -> Plus
arm_3R 3857504..3857688 660..846 98   Plus

BO12215.pep Sequence

Translation from 16 to 862

> BO12215.pep
MARRPEHSAPPEIFYNDDEAKKYSTNTRIIEIQVEMAERALELLALPDDD
ESRLILDIGCGSGLSGSVLEDSEHMWIGIDISKSMLDIAVEREVAGDVIL
GDMGEGMPFKPGTFDGAISISALQWLCNADKSYHNPHKRLLKFFTTLFSC
LTRTARAVFQFYPENSDQIEMVTSQAMKAGFYGGLVVDYPNSAKAKKYYL
VLMTGGSAELPQALGSPEEERRVNYIKKRDACREARGKAPKKSRDWILAK
KERRRRQGLETRPDTKYTARKRSGKFASFLDH

BO12215.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG10903-PB 276 CG10903-PB 1..276 1..276 1433 100 Plus
CG10903-PA 276 CG10903-PA 1..276 1..276 1433 100 Plus