Clone BO12216 Report

Search the DGRC for BO12216

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:122
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG7016-RA
Protein status:BO12216.pep: validated full length
Sequenced Size:1120

Clone Sequence Records

BO12216.3prime Sequence

620 bp (582 high quality bases) assembled on 2006-04-20

> BO12216.3prime
ATGGTCTAGAAAGCTTGCTCTTCGTCTCACATCAATGGGAATTGAGGGAA
CCTCCGGGTTTGGCACATGGATATATTTGCTAGAGCTGGGGAATATAATA
GCACGATTTTCGGAGAGTTCGTCCAATGGTTTTGGCAATGGCTCCGGCAC
GATCCAAGTGGGAAAAGTGGGCGTGGGTGGATCCGGATTATGGGGCGGCA
CCAACGGCGGTCGATTGGTTCCTATTATGAGCGTATCCTTCGTTGGCTGA
GCGGTTGGACGTGGCTGGATCGTGGGAAAGGTGGGCTCTGGCTTAGGTGT
TGTCGTTGGAAAGATGGGTCCTGGTATTGGCGTTTGTGGAGTGGTGCTAG
ACTCATTATCTGGATTCCAATTCGTGTTTGGATCATTGGGATCCGGCTGA
TCGGGGAGGCGTGGATAGTTATCCCATTCCTGTTCCATCCCTCCATTCCA
GCCTGGCCTTGGTGGCGGAGGTCCTCCGCCATTCCATCCTGGCCTTGGTG
GCGGTGGCCCTCCTCCATTCCAGCCTGGCATCGGTGGTGGTGGCCCGCCG
CCGTTCCATCCTGGTCTTGGCGGCGGTGGTCCGCCTCCGTAAAAACCTGG
TCTTGGTGGAGGTCCTCTTC

BO12216.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG7016-PA 1089 CG7016-RA 485..1086 620..19 2960 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG7016-RA 1286 CG7016-RA 535..1136 620..19 2980 99.7 Minus
CG7016-RA 1286 CG7016-RA 542..676 577..443 330 83 Minus
CG7016-RA 1286 CG7016-RA 578..712 613..479 300 81.5 Minus
CG7016-RA 1286 CG7016-RA 639..715 588..512 220 85.7 Minus
CG7016-RA 1286 CG7016-RA 542..643 541..440 210 80.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:53:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24863465..24864066 620..19 2980 99.7 Minus
3R 32079331 3R 24863472..24863606 577..443 330 83 Minus
3R 32079331 3R 24863508..24863642 613..479 300 81.5 Minus
3R 32079331 3R 24863569..24863645 588..512 220 85.7 Minus
3R 32079331 3R 24863472..24863573 541..440 210 80.4 Minus
Blast to na_te.dros performed on 2015-02-12 03:53:28 has no hits.

BO12216.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:32 Download gff for BO12216.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7016-PA 485..1089 16..620 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:41 Download gff for BO12216.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7016-PA 485..1089 16..620 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:55:30 Download gff for BO12216.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7016-RA 535..1147 7..620 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:46:51 Download gff for BO12216.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7016-RA 535..1147 7..620 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:46:51 Download gff for BO12216.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24863465..24864077 7..620 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:55:30 Download gff for BO12216.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20689187..20689799 7..620 99   Minus

BO12216.5prime Sequence

895 bp (789 high quality bases) assembled on 2006-04-20

> BO12216.5prime
GAAGTTATCAGTCGACATGACGCGATCTTCGCCAGCTTGGTGTGCTGGCC
AGGCCTGGCTCGTCTGGCTTTTGGCATCCATCTGGATACGCACGTGTCTC
GCGCAATTTGCAGTCTCCTCGTCCTCCGCCGGCGGAGCTGTTGCCTCCGC
CGGTGGCGTCACTGTGGTGGCCCAGCTGCCCGGTTTCGGAGTTATCAATG
GACTGATCAATGCCATGCACAACAACAACCGCTTCAACCAGCAGCCGCAG
TTCGAGAGACTGCAGCAAGGAAGGCCGGGGATGGGTCCGAATCGAGGAGG
AATGCACAGACCAGGATTTGCACCACCCAACCGTCAGCAACCGACGCCTC
CTGGCTGGCCACCCGGCTGGCAGTGGGGAGCCGGTGGAAATCAGAATCAA
CCCGGATTTGACTGGGTTCAAACAGGATTTGCACCAGGCTGGAATGGAGG
TGGAGGGCAAGGACCAGGATGGAATGGTCCAGGATGGAACGGAGGCGGTG
GAAGAGGACCTCCACCAAGACCAGGTTTTAACGGCGGCGGACCACCGCCG
CCAAGACCAGGATGGAACGGCGGCGGGCCACCACCACCGATGCCAGGCTG
GAATGGAGGAGGGCCACCGCCACCAAGGCCAGGATGGAATGGCGGAGGAC
CTCCGCCACCAAGGCCAGGCTGGAATGGAGGGATGGAACAGGAATGGGAT
AACTATCCACGCCTCCCCGATCAGCCGGATCCCAATGATCCAAACACGAA
TTGGAATCCAGATAATGAGTCTAGCACCACTCCACAAACGCCAATACCAG
GACCCATCTTTCCAACGACAACACCTAAGCCAGAGCCCACCTTTCCCACG
ATCCAGCCACGTCCACCCGCTCAGCCAACGAAGGATACGCTCATA

BO12216.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7016-PA 1089 CG7016-RA 1..879 17..895 4370 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG7016-RA 1286 CG7016-RA 49..929 15..895 4390 99.9 Plus
CG7016-RA 1286 CG7016-RA 542..676 544..678 330 83 Plus
CG7016-RA 1286 CG7016-RA 578..712 508..642 330 83 Plus
CG7016-RA 1286 CG7016-RA 542..643 580..681 210 80.4 Plus
CG7016-RA 1286 CG7016-RA 614..715 508..609 210 80.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:33:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24862979..24863859 15..895 4390 99.9 Plus
3R 32079331 3R 24863472..24863606 544..678 330 83 Plus
3R 32079331 3R 24863508..24863642 508..642 330 83 Plus
3R 32079331 3R 24863472..24863573 580..681 210 80.4 Plus
3R 32079331 3R 24863544..24863645 508..609 210 80.4 Plus
Blast to na_te.dros performed on 2015-02-13 02:33:23 has no hits.

BO12216.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:34 Download gff for BO12216.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7016-PA 1..878 17..894 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:42 Download gff for BO12216.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7016-PA 1..878 17..894 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:12:53 Download gff for BO12216.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7016-RA 42..928 9..894 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:44:05 Download gff for BO12216.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7016-RA 42..928 9..894 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:44:05 Download gff for BO12216.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24862972..24863858 9..894 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:12:53 Download gff for BO12216.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20688694..20689580 9..894 99   Plus

BO12216.complete Sequence

1120 bp assembled on 2006-10-11

GenBank Submission: FJ632362

> BO12216.complete
GAAGTTATCAGTCGACATGACGCGATCTTCGCCAGCTTGGTGTGCTGGCC
AGGCCTGGCTCGTCTGGCTTTTGGCATCCATCTGGATACGCACGTGTCTC
GCGCAATTTGCAGTCTCCTCGTCCTCCGCCGGCGGAGCTGTTGCCTCCGC
CGGTGGCGTCACTGTGGTGGCCCAGCTGCCCGGTTTCGGAGTTATCAATG
GACTGATCAATGCCATGCACAACAACAACCGCTTCAACCAGCAGCCGCAG
TTCGAGAGACTGCAGCAAGGAAGGCCGGGGATGGGTCCGAATCGAGGAGG
AATGCACAGACCAGGATTTGCACCACCCAACCGTCAGCAACCGACGCCTC
CTGGCTGGCCACCCGGCTGGCAGTGGGGAGCCGGTGGAAATCAGAATCAA
CCCGGATTTGACTGGGTTCAAACAGGATTTGCACCAGGCTGGAATGGAGG
TGGAGGGCAAGGACCAGGATGGAATGGTCCAGGATGGAACGGAGGCGGTG
GAAGAGGACCTCCACCAAGACCAGGTTTTAACGGCGGCGGACCACCGCCG
CCAAGACCAGGATGGAACGGCGGCGGGCCACCACCACCGATGCCAGGCTG
GAATGGAGGAGGGCCACCGCCACCAAGGCCAGGATGGAATGGCGGAGGAC
CTCCGCCACCAAGGCCAGGCTGGAATGGAGGGATGGAACAGGAATGGGAT
AACTATCCACGCCTCCCCGATCAGCCGGATCCCAATGATCCAAACACGAA
TTGGAATCCAGATAATGAGTCTAGCACCACTCCACAAACGCCAATACCAG
GACCCATCTTTCCAACGACAACACCTAAGCCAGAGCCCACCTTTCCCACG
ATCCAGCCACGTCCAACCGCTCAGCCAACGAAGGATACGCTCATAATAGG
AACCAATCGACCGCCGTTGGTGCCGCCCCATAATCCGGATCCACCCACGC
CCACTTTTCCCACTTGGATCGTGCCGGAGCCATTGCCAAAACCATTGGAC
GAACTCTCCGAAAATCGTGCTATTATATTCCCCAGCTCTAGCAAATATAT
CCATGTGCCAAACCCGGAGGTTCCCTCAATTCCCATTGATGTGAGACGAA
GAGCAAGCTTTCTAGACCAT

BO12216.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:17:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7016-RA 1089 CG7016-PA 1..1086 17..1102 5430 100 Plus
CG7016-RA 1089 CG7016-PA 492..626 544..678 330 83 Plus
CG7016-RA 1089 CG7016-PA 528..662 508..642 330 83 Plus
CG7016-RA 1089 CG7016-PA 492..593 580..681 210 80.4 Plus
CG7016-RA 1089 CG7016-PA 564..665 508..609 210 80.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:17:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG7016-RA 1286 CG7016-RA 49..1136 15..1102 5440 100 Plus
CG7016-RA 1286 CG7016-RA 578..712 508..642 330 83 Plus
CG7016-RA 1286 CG7016-RA 542..676 544..678 330 83 Plus
CG7016-RA 1286 CG7016-RA 542..643 580..681 210 80.4 Plus
CG7016-RA 1286 CG7016-RA 614..715 508..609 210 80.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:17:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24862979..24864066 15..1102 5440 100 Plus
3R 32079331 3R 24863472..24863606 544..678 330 83 Plus
3R 32079331 3R 24863508..24863642 508..642 330 83 Plus
3R 32079331 3R 24863472..24863573 580..681 210 80.4 Plus
3R 32079331 3R 24863544..24863645 508..609 210 80.4 Plus
Blast to na_te.dros performed on 2014-11-27 08:17:34 has no hits.

BO12216.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:00 Download gff for BO12216.complete
Subject Subject Range Query Range Percent Splice Strand
CG7016-RA 1..1089 17..1105 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:35 Download gff for BO12216.complete
Subject Subject Range Query Range Percent Splice Strand
CG7016-RA 41..1146 9..1114 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:23 Download gff for BO12216.complete
Subject Subject Range Query Range Percent Splice Strand
CG7016-RA 51..1136 17..1104 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:01 Download gff for BO12216.complete
Subject Subject Range Query Range Percent Splice Strand
CG7016-RA 41..1146 9..1114 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:06 Download gff for BO12216.complete
Subject Subject Range Query Range Percent Splice Strand
CG7016-RA 51..1136 17..1104 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:06 Download gff for BO12216.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24862981..24864066 17..1104 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:23 Download gff for BO12216.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20688703..20689788 17..1104 99   Plus

BO12216.pep Sequence

Translation from 16 to 1120

> BO12216.pep
MTRSSPAWCAGQAWLVWLLASIWIRTCLAQFAVSSSSAGGAVASAGGVTV
VAQLPGFGVINGLINAMHNNNRFNQQPQFERLQQGRPGMGPNRGGMHRPG
FAPPNRQQPTPPGWPPGWQWGAGGNQNQPGFDWVQTGFAPGWNGGGGQGP
GWNGPGWNGGGGRGPPPRPGFNGGGPPPPRPGWNGGGPPPPMPGWNGGGP
PPPRPGWNGGGPPPPRPGWNGGMEQEWDNYPRLPDQPDPNDPNTNWNPDN
ESSTTPQTPIPGPIFPTTTPKPEPTFPTIQPRPTAQPTKDTLIIGTNRPP
LVPPHNPDPPTPTFPTWIVPEPLPKPLDELSENRAIIFPSSSKYIHVPNP
EVPSIPIDVRRRASFLDH

BO12216.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7016-PA 362 CG7016-PA 1..362 1..362 2129 100 Plus
CG9425-PD 2103 CG9425-PD 1292..1520 83..322 217 31.9 Plus
CG9425-PC 2103 CG9425-PC 1292..1520 83..322 217 31.9 Plus
CG9425-PB 2103 CG9425-PB 1292..1520 83..322 217 31.9 Plus
CG15021-PA 420 CG15021-PA 117..371 91..326 207 31.7 Plus