Clone Sequence Records
BO12216.3prime Sequence
620 bp (582 high quality bases) assembled on 2006-04-20
> BO12216.3prime
ATGGTCTAGAAAGCTTGCTCTTCGTCTCACATCAATGGGAATTGAGGGAA
CCTCCGGGTTTGGCACATGGATATATTTGCTAGAGCTGGGGAATATAATA
GCACGATTTTCGGAGAGTTCGTCCAATGGTTTTGGCAATGGCTCCGGCAC
GATCCAAGTGGGAAAAGTGGGCGTGGGTGGATCCGGATTATGGGGCGGCA
CCAACGGCGGTCGATTGGTTCCTATTATGAGCGTATCCTTCGTTGGCTGA
GCGGTTGGACGTGGCTGGATCGTGGGAAAGGTGGGCTCTGGCTTAGGTGT
TGTCGTTGGAAAGATGGGTCCTGGTATTGGCGTTTGTGGAGTGGTGCTAG
ACTCATTATCTGGATTCCAATTCGTGTTTGGATCATTGGGATCCGGCTGA
TCGGGGAGGCGTGGATAGTTATCCCATTCCTGTTCCATCCCTCCATTCCA
GCCTGGCCTTGGTGGCGGAGGTCCTCCGCCATTCCATCCTGGCCTTGGTG
GCGGTGGCCCTCCTCCATTCCAGCCTGGCATCGGTGGTGGTGGCCCGCCG
CCGTTCCATCCTGGTCTTGGCGGCGGTGGTCCGCCTCCGTAAAAACCTGG
TCTTGGTGGAGGTCCTCTTC
BO12216.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7016-PA | 1089 | CG7016-RA | 485..1086 | 620..19 | 2960 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:53:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7016-RA | 1286 | CG7016-RA | 535..1136 | 620..19 | 2980 | 99.7 | Minus |
CG7016-RA | 1286 | CG7016-RA | 542..676 | 577..443 | 330 | 83 | Minus |
CG7016-RA | 1286 | CG7016-RA | 578..712 | 613..479 | 300 | 81.5 | Minus |
CG7016-RA | 1286 | CG7016-RA | 639..715 | 588..512 | 220 | 85.7 | Minus |
CG7016-RA | 1286 | CG7016-RA | 542..643 | 541..440 | 210 | 80.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:53:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24863465..24864066 | 620..19 | 2980 | 99.7 | Minus |
3R | 32079331 | 3R | 24863472..24863606 | 577..443 | 330 | 83 | Minus |
3R | 32079331 | 3R | 24863508..24863642 | 613..479 | 300 | 81.5 | Minus |
3R | 32079331 | 3R | 24863569..24863645 | 588..512 | 220 | 85.7 | Minus |
3R | 32079331 | 3R | 24863472..24863573 | 541..440 | 210 | 80.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:53:28 has no hits.
BO12216.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:32 Download gff for
BO12216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7016-PA | 485..1089 | 16..620 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:41 Download gff for
BO12216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7016-PA | 485..1089 | 16..620 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:55:30 Download gff for
BO12216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7016-RA | 535..1147 | 7..620 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:46:51 Download gff for
BO12216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7016-RA | 535..1147 | 7..620 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:46:51 Download gff for
BO12216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24863465..24864077 | 7..620 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:55:30 Download gff for
BO12216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20689187..20689799 | 7..620 | 99 | | Minus |
BO12216.5prime Sequence
895 bp (789 high quality bases) assembled on 2006-04-20
> BO12216.5prime
GAAGTTATCAGTCGACATGACGCGATCTTCGCCAGCTTGGTGTGCTGGCC
AGGCCTGGCTCGTCTGGCTTTTGGCATCCATCTGGATACGCACGTGTCTC
GCGCAATTTGCAGTCTCCTCGTCCTCCGCCGGCGGAGCTGTTGCCTCCGC
CGGTGGCGTCACTGTGGTGGCCCAGCTGCCCGGTTTCGGAGTTATCAATG
GACTGATCAATGCCATGCACAACAACAACCGCTTCAACCAGCAGCCGCAG
TTCGAGAGACTGCAGCAAGGAAGGCCGGGGATGGGTCCGAATCGAGGAGG
AATGCACAGACCAGGATTTGCACCACCCAACCGTCAGCAACCGACGCCTC
CTGGCTGGCCACCCGGCTGGCAGTGGGGAGCCGGTGGAAATCAGAATCAA
CCCGGATTTGACTGGGTTCAAACAGGATTTGCACCAGGCTGGAATGGAGG
TGGAGGGCAAGGACCAGGATGGAATGGTCCAGGATGGAACGGAGGCGGTG
GAAGAGGACCTCCACCAAGACCAGGTTTTAACGGCGGCGGACCACCGCCG
CCAAGACCAGGATGGAACGGCGGCGGGCCACCACCACCGATGCCAGGCTG
GAATGGAGGAGGGCCACCGCCACCAAGGCCAGGATGGAATGGCGGAGGAC
CTCCGCCACCAAGGCCAGGCTGGAATGGAGGGATGGAACAGGAATGGGAT
AACTATCCACGCCTCCCCGATCAGCCGGATCCCAATGATCCAAACACGAA
TTGGAATCCAGATAATGAGTCTAGCACCACTCCACAAACGCCAATACCAG
GACCCATCTTTCCAACGACAACACCTAAGCCAGAGCCCACCTTTCCCACG
ATCCAGCCACGTCCACCCGCTCAGCCAACGAAGGATACGCTCATA
BO12216.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7016-PA | 1089 | CG7016-RA | 1..879 | 17..895 | 4370 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:33:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7016-RA | 1286 | CG7016-RA | 49..929 | 15..895 | 4390 | 99.9 | Plus |
CG7016-RA | 1286 | CG7016-RA | 542..676 | 544..678 | 330 | 83 | Plus |
CG7016-RA | 1286 | CG7016-RA | 578..712 | 508..642 | 330 | 83 | Plus |
CG7016-RA | 1286 | CG7016-RA | 542..643 | 580..681 | 210 | 80.4 | Plus |
CG7016-RA | 1286 | CG7016-RA | 614..715 | 508..609 | 210 | 80.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:33:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24862979..24863859 | 15..895 | 4390 | 99.9 | Plus |
3R | 32079331 | 3R | 24863472..24863606 | 544..678 | 330 | 83 | Plus |
3R | 32079331 | 3R | 24863508..24863642 | 508..642 | 330 | 83 | Plus |
3R | 32079331 | 3R | 24863472..24863573 | 580..681 | 210 | 80.4 | Plus |
3R | 32079331 | 3R | 24863544..24863645 | 508..609 | 210 | 80.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:33:23 has no hits.
BO12216.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:34 Download gff for
BO12216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7016-PA | 1..878 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:42 Download gff for
BO12216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7016-PA | 1..878 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:12:53 Download gff for
BO12216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7016-RA | 42..928 | 9..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:44:05 Download gff for
BO12216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7016-RA | 42..928 | 9..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:44:05 Download gff for
BO12216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24862972..24863858 | 9..894 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:12:53 Download gff for
BO12216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20688694..20689580 | 9..894 | 99 | | Plus |
BO12216.complete Sequence
1120 bp assembled on 2006-10-11
GenBank Submission: FJ632362
> BO12216.complete
GAAGTTATCAGTCGACATGACGCGATCTTCGCCAGCTTGGTGTGCTGGCC
AGGCCTGGCTCGTCTGGCTTTTGGCATCCATCTGGATACGCACGTGTCTC
GCGCAATTTGCAGTCTCCTCGTCCTCCGCCGGCGGAGCTGTTGCCTCCGC
CGGTGGCGTCACTGTGGTGGCCCAGCTGCCCGGTTTCGGAGTTATCAATG
GACTGATCAATGCCATGCACAACAACAACCGCTTCAACCAGCAGCCGCAG
TTCGAGAGACTGCAGCAAGGAAGGCCGGGGATGGGTCCGAATCGAGGAGG
AATGCACAGACCAGGATTTGCACCACCCAACCGTCAGCAACCGACGCCTC
CTGGCTGGCCACCCGGCTGGCAGTGGGGAGCCGGTGGAAATCAGAATCAA
CCCGGATTTGACTGGGTTCAAACAGGATTTGCACCAGGCTGGAATGGAGG
TGGAGGGCAAGGACCAGGATGGAATGGTCCAGGATGGAACGGAGGCGGTG
GAAGAGGACCTCCACCAAGACCAGGTTTTAACGGCGGCGGACCACCGCCG
CCAAGACCAGGATGGAACGGCGGCGGGCCACCACCACCGATGCCAGGCTG
GAATGGAGGAGGGCCACCGCCACCAAGGCCAGGATGGAATGGCGGAGGAC
CTCCGCCACCAAGGCCAGGCTGGAATGGAGGGATGGAACAGGAATGGGAT
AACTATCCACGCCTCCCCGATCAGCCGGATCCCAATGATCCAAACACGAA
TTGGAATCCAGATAATGAGTCTAGCACCACTCCACAAACGCCAATACCAG
GACCCATCTTTCCAACGACAACACCTAAGCCAGAGCCCACCTTTCCCACG
ATCCAGCCACGTCCAACCGCTCAGCCAACGAAGGATACGCTCATAATAGG
AACCAATCGACCGCCGTTGGTGCCGCCCCATAATCCGGATCCACCCACGC
CCACTTTTCCCACTTGGATCGTGCCGGAGCCATTGCCAAAACCATTGGAC
GAACTCTCCGAAAATCGTGCTATTATATTCCCCAGCTCTAGCAAATATAT
CCATGTGCCAAACCCGGAGGTTCCCTCAATTCCCATTGATGTGAGACGAA
GAGCAAGCTTTCTAGACCAT
BO12216.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:17:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7016-RA | 1089 | CG7016-PA | 1..1086 | 17..1102 | 5430 | 100 | Plus |
CG7016-RA | 1089 | CG7016-PA | 492..626 | 544..678 | 330 | 83 | Plus |
CG7016-RA | 1089 | CG7016-PA | 528..662 | 508..642 | 330 | 83 | Plus |
CG7016-RA | 1089 | CG7016-PA | 492..593 | 580..681 | 210 | 80.4 | Plus |
CG7016-RA | 1089 | CG7016-PA | 564..665 | 508..609 | 210 | 80.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:17:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7016-RA | 1286 | CG7016-RA | 49..1136 | 15..1102 | 5440 | 100 | Plus |
CG7016-RA | 1286 | CG7016-RA | 578..712 | 508..642 | 330 | 83 | Plus |
CG7016-RA | 1286 | CG7016-RA | 542..676 | 544..678 | 330 | 83 | Plus |
CG7016-RA | 1286 | CG7016-RA | 542..643 | 580..681 | 210 | 80.4 | Plus |
CG7016-RA | 1286 | CG7016-RA | 614..715 | 508..609 | 210 | 80.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:17:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24862979..24864066 | 15..1102 | 5440 | 100 | Plus |
3R | 32079331 | 3R | 24863472..24863606 | 544..678 | 330 | 83 | Plus |
3R | 32079331 | 3R | 24863508..24863642 | 508..642 | 330 | 83 | Plus |
3R | 32079331 | 3R | 24863472..24863573 | 580..681 | 210 | 80.4 | Plus |
3R | 32079331 | 3R | 24863544..24863645 | 508..609 | 210 | 80.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:17:34 has no hits.
BO12216.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:00 Download gff for
BO12216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7016-RA | 1..1089 | 17..1105 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:35 Download gff for
BO12216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7016-RA | 41..1146 | 9..1114 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:23 Download gff for
BO12216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7016-RA | 51..1136 | 17..1104 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:01 Download gff for
BO12216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7016-RA | 41..1146 | 9..1114 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:06 Download gff for
BO12216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7016-RA | 51..1136 | 17..1104 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:06 Download gff for
BO12216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24862981..24864066 | 17..1104 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:23 Download gff for
BO12216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20688703..20689788 | 17..1104 | 99 | | Plus |
BO12216.pep Sequence
Translation from 16 to 1120
> BO12216.pep
MTRSSPAWCAGQAWLVWLLASIWIRTCLAQFAVSSSSAGGAVASAGGVTV
VAQLPGFGVINGLINAMHNNNRFNQQPQFERLQQGRPGMGPNRGGMHRPG
FAPPNRQQPTPPGWPPGWQWGAGGNQNQPGFDWVQTGFAPGWNGGGGQGP
GWNGPGWNGGGGRGPPPRPGFNGGGPPPPRPGWNGGGPPPPMPGWNGGGP
PPPRPGWNGGGPPPPRPGWNGGMEQEWDNYPRLPDQPDPNDPNTNWNPDN
ESSTTPQTPIPGPIFPTTTPKPEPTFPTIQPRPTAQPTKDTLIIGTNRPP
LVPPHNPDPPTPTFPTWIVPEPLPKPLDELSENRAIIFPSSSKYIHVPNP
EVPSIPIDVRRRASFLDH
BO12216.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7016-PA | 362 | CG7016-PA | 1..362 | 1..362 | 2129 | 100 | Plus |
CG9425-PD | 2103 | CG9425-PD | 1292..1520 | 83..322 | 217 | 31.9 | Plus |
CG9425-PC | 2103 | CG9425-PC | 1292..1520 | 83..322 | 217 | 31.9 | Plus |
CG9425-PB | 2103 | CG9425-PB | 1292..1520 | 83..322 | 217 | 31.9 | Plus |
CG15021-PA | 420 | CG15021-PA | 117..371 | 91..326 | 207 | 31.7 | Plus |