Clone BO12221 Report

Search the DGRC for BO12221

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:122
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptOsi17-RA
Protein status:BO12221.pep:
Sequenced Size:1978

Clone Sequence Records

BO12221.3prime Sequence

851 bp (754 high quality bases) assembled on 2006-04-20

> BO12221.3prime
ATGGTCTAGAAAGCTTGCCTTGGCCGGCATATTGCACTGTGGGTACAGGC
TCTGGCAGTCCTTTTGATCCTGGCCATCCCGGGCAGCCTGAATTAGCCGG
TAGAAGCGACGCACTGCCTCATTCGCATGCGTTACGGGCTCCAGTTCGCT
GGTATCGCGACTGAGCTCCGCGGAAATGAAATTGCTGTGCGGACTGTAGG
TGGCCGGATCCTTGTACATGCTGCACACAATTCGCTCCTTGCAGAGGTCG
TTTTTTACTCCGAGCTGCTCGATGATTTTGTCGATTTTCAGCAGAATGGG
ACTGTAGAACGGATCGTAGTTGAGCGGATACAGCGGCTGTCCATCCTGCA
CGAATGGCTGGTGCTCCAGTATCTTCTGCTGCTGCTGGATGAGCCGCTGC
TCGGTCTGAATGCGGATAGCCTCCTTCAGCTGGGCTGCTATTTCAGGCGA
AAGTTGTGGCTCCTGAACAGCGTGATTTGGCTGCTGCGGCGGCTGCTGCG
GATGCTGATTGTTGCGGGATGGATCGTACTGCGCGGCAATTTGTGCGGCT
GCCGTGAGTCCGGGAACATTTTGCGGCGGATGGTGTCCCTGTCCCGGGAC
GTACACCGGATGGTGCTGCGTGTGTGCCGGCCTTGAGTCGGATCCCAAGC
CAGGACCGCTGTTCTCCCAGGCGCCCTCGAAGTGCTCGAATCCGGGTCCA
TAGCTCTCGTGCACCGGAGCGCCATGGAGATAGGCGGACGGATGGCCCTT
CGGCGGGTGGGTATAAATGATTTCCGGAACCGAGTGGTGCTCACCACTGT
GCCATGGCGGAACAACCGTGTGATGATGATCGATAAGGTGATGGTGGTGG
T

BO12221.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG15598-PA 1947 Osi17-RA 1112..1944 851..19 4165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
Osi17-RB 3762 CG15598-RB 2416..3248 851..19 4165 100 Minus
Osi17-RA 3049 CG15598-RA 1703..2535 851..19 4165 100 Minus
Osi17-RD 4068 CG15598-RD 2936..3554 637..19 3095 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:59:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6321810..6321999 637..448 950 100 Minus
3R 32079331 3R 6323991..6324172 339..158 910 100 Minus
3R 32079331 3R 6320527..6320706 817..638 900 100 Minus
3R 32079331 3R 6326655..6326794 158..19 700 100 Minus
3R 32079331 3R 6323806..6323917 448..337 560 100 Minus
3R 32079331 3R 6318386..6318422 851..815 185 100 Minus
Blast to na_te.dros performed 2015-02-11 16:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6875 512..357 157 60.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6677..6874 510..310 132 54.5 Minus

BO12221.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:42 Download gff for BO12221.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15598-PA 1112..1947 16..851 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:55 Download gff for BO12221.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15598-PA 1112..1947 16..851 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:45:07 Download gff for BO12221.3prime
Subject Subject Range Query Range Percent Splice Strand
Osi17-RA 1703..2540 13..851 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:04:48 Download gff for BO12221.3prime
Subject Subject Range Query Range Percent Splice Strand
Osi17-RA 1703..2540 13..851 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:04:48 Download gff for BO12221.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6318386..6318420 817..851 100 -> Minus
3R 6320528..6320706 638..816 100 -> Minus
3R 6321810..6321999 448..637 100 -> Minus
3R 6323807..6323917 337..447 100 -> Minus
3R 6323994..6324172 158..336 100 -> Minus
3R 6326656..6326799 13..157 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:45:07 Download gff for BO12221.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2152378..2152521 13..157 97   Minus
arm_3R 2149716..2149894 158..336 100 -> Minus
arm_3R 2149529..2149639 337..447 100 -> Minus
arm_3R 2144108..2144142 817..851 100 -> Minus
arm_3R 2146250..2146428 638..816 100 -> Minus
arm_3R 2147532..2147721 448..637 100 -> Minus

BO12221.5prime Sequence

900 bp (766 high quality bases) assembled on 2006-04-20

> BO12221.5prime
GAAGTTATCAGTCGACATGCCCAACACATACAGTGCTTTGCCCCATAATC
GGAGCTCAGGTGAGAGCCAGCAACAGTGGACATCCTCCAGTAGAAATCGC
ACCTGCCATCCAGTGAGCATGGCCAGATCAACGAGTGGCCACTTGATTTT
CCTCCTCTTGATCTGCCTAATAAACTCGGCCGCCAAAGCGGATGGAACGG
CTCGGAATGGTCGTCTTGGCCGTCATCTCTCTACCACTCCTTTAAGCCAT
CCGACCGTGGAATCGCAGCCAACCGAGGAGCAAGAAATGTTTACCGAGTC
ACCAACGGAATCCCCAGAGGATGTCGAGCTTGCGACGACGACGGAACTAC
CGCCGGAAGAAGACTGGCAGCCTCTGATAAATGCCACCAAGTTTCCCACG
AGGAAGCCGATGGACAAAATGGCTCCCAGTGATTCCCTGCTCCTTAGACT
GGCCCGGCGATTCGCCAGTGGAAACGAGCTGTGGGACGGCCTTGTCCGCG
ATTGCTATCTAAAGCCAGATGTATCTTGCTTCCAAAAGAACGTCTTCAGC
TACCTGGATAACGTTCTGGATGTGCAGGACGTGAATGTGACCCAAAGGCT
CAAGTTCTTCAAGAATCAAGTGGACTACCAAGTGGACAAGGAGAAGGAGG
AGCACTCGGAGGCACGTGCCGCCAGTGCGGAAACCCCGATCGAGGAAGTG
ACCAGCGCTCTATATGGCAAGAGCATCAAGTTTGCCATGACCCACGATCT
AGAGGTGGACCTGCCTGAGGTTATGTTCAATGGCGCCACCTTTCGCATCT
CGCCGCGAGCCATTGAAGGCAATGGAATCATCGCCAAGCTGGAGCTGATT
CCCAAACAGGTAGTCAAAGCCCGACTGGCCGGGGCGATAATCCAAAAAAA

BO12221.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG15598-PA 1947 Osi17-RA 1..878 17..894 4390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
Osi17-RD 4068 CG15598-RD 1305..2182 17..894 4390 100 Plus
Osi17-RC 3355 CG15598-RC 592..1469 17..894 4390 100 Plus
Osi17-RB 3762 CG15598-RB 1305..2182 17..894 4390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:28:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6315887..6316541 17..671 3275 100 Plus
3R 32079331 3R 6317773..6317996 671..894 1120 100 Plus
Blast to na_te.dros performed on 2015-02-04 03:28:35 has no hits.

BO12221.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:43 Download gff for BO12221.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15598-PA 1..877 17..893 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:57 Download gff for BO12221.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15598-PA 1..877 17..893 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:53:53 Download gff for BO12221.5prime
Subject Subject Range Query Range Percent Splice Strand
Osi17-RB 1302..2181 14..893 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:29:26 Download gff for BO12221.5prime
Subject Subject Range Query Range Percent Splice Strand
Osi17-RB 1302..2181 14..893 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:29:26 Download gff for BO12221.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6315884..6316541 14..671 99 -> Plus
3R 6317774..6317995 672..893 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:53:53 Download gff for BO12221.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2141606..2142263 14..671 99 -> Plus
arm_3R 2143496..2143717 672..893 100   Plus

BO12221.complete Sequence

1978 bp assembled on 2008-01-17

GenBank Submission: FJ632363

> BO12221.complete
GAAGTTATCAGTCGACATGCCCAACACATACAGTGCTTTGCCCCATAATC
GGAGCTCAGGTGAGAGCCAGCAACAGTGGACATCCTCCAGTAGAAATCGC
ACCTGCCATCCAGTGAGCATGGCCAGATCAACGAGTGGCCACTTGATTTT
CCTCCTCTTGATCTGCCTAATAAACTCGGCCGCCAAAGCGGATGGAACGG
CTCGGAATGGTCGTCTTGGCCGTCATCTCTCTACCACTCCTTTAAGCCAT
CCGACCGTGGAATCGCAGCCAACCGAGGAGCAAGAAATGTTTACCGAGTC
ACCAACGGAATCCCCAGAGGATGTCGAGCTTGCGACGACGACGGAACTAC
CGCCGGAAGAAGACTGGCAGCCTCTGATAAATGCCACCAAGTTTCCCACG
AGGAAGCCGATGGACAAAATGGCTCCCAGTGATTCCCTGCTCCTTAGACT
GGCCCGGCGATTCGCCAGTGGAAACGAGCTGTGGGACGGCCTTGTCCGCG
ATTGCTATCTAAAGCCAGATGTATCTTGCTTCCAAAAGAACGTCTTCAGC
TACCTGGATAACGTTCTGGATGTGCAGGACGTGAATGTGACCCAAAGGCT
CAAGTTCTTCAAGAATCAAGTGGACTACCAAGTGGACAAGGAGAAGGAGG
AGCACTCGGAGGCACGTGCCGCCAGTGCGGAAACCCCGATCGAGGAAGTG
ACCAGCGCTCTATATGGCAAGAGCATCAAGTTTGCCATGACCCACGATCT
AGAGGTGGACCTGCCTGAGGTTATGTTCAATGGCGCCACCTTTCGCATCT
CGCCGCGAGCCATTGAAGGCAATGGAATCATCGCCAAGCTGGAGCTGATT
CCCAAACAGGTAGTCAAAGCCCGACTGGCCGGGGCGATAATCCAGAAGAA
GATACAAAAATTTCTACGCAGCAAACTGGTGCTGTCATTCCTCGCATTGC
TGCTGATCATTAAAATCATCAAGATCAAGTTGTTCTGGCTCCTGCCAATC
GTCATCGGAGTTGGTGCGGCCAAGAAGCTGCTGCTAAAGTTCCTGCTCTT
CCTGTTCCCAGCGCTGTCGCATCTCTTCAAGCTCTGCTCGCACTACCAGC
AATCCTATCACGCACCCGCCAAGTACCACCACCACCATCACCTTATCGAT
CATCATCACACGGTTGTTCCGCCATGGCACAGTGGTGAGCACCACTCGGT
TCCGGAAATCATTTATACCCACCCGCCGAAGGGCCATCCGTCCGCCTATC
TCCATGGCGCTCCGGTGCACGAGAGCTATGGACCCGGATTCGAGCACTTC
GAGGGCGCCTGGGAGAACAGCGGTCCTGGCTTGGGATCCGACTCAAGGCC
GGCACACACGCAGCACCATCCGGTGTACGTCCCGGGACAGGGACACCATC
CGCCGCAAAATGTTCCCGGACTCACGGCAGCCGCACAAATTGCCGCGCAG
TACGATCCATCCCGCAACAATCAGCATCCGCAGCAGCCGCCGCAGCAGCC
AAATCACGCTGTTCAGGAGCCACAACTTTCGCCTGAAATAGCAGCCCAGC
TGAAGGAGGCTATCCGCATTCAGACCGAGCAGCGGCTCATCCAGCAGCAG
CAGAAGATACTGGAGCACCAGCCATTCGTGCAGGATGGACAGCCGCTGTA
TCCGCTCAACTACGATCCGTTCTACAGTCCCATTCTGCTGAAAATCGACA
AAATCATCGAGCAGCTCGGAGTAAAAAACGACCTCTGCAAGGAGCGAATT
GTGTGCAGCATGTACAAGGATCCGGCCACCTACAGTCCGCACAGCAATTT
CATTTCCGCGGAGCTCAGTCGCGATACCAGCGAACTGGAGCCCGTAACGC
ATGCGAATGAGGCAGTGCGTCGCTTCTACCGGCTAATTCAGGCTGCCCGG
GATGGCCAGGATCAAAAGGACTGCCAGAGCCTGTACCCACAGTGCAATAT
GCCGGCCAAGGCAAGCTTTCTAGACCAT

BO12221.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:49:13
Subject Length Description Subject Range Query Range Score Percent Strand
Osi17-RB 1947 CG15598-PB 1..1944 17..1960 9720 100 Plus
Osi17-RA 1947 CG15598-PA 1..1944 17..1960 9720 100 Plus
Osi17-RD 2253 CG15598-PD 1..1325 17..1341 6625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:49:15
Subject Length Description Subject Range Query Range Score Percent Strand
Osi17-RB 3762 CG15598-RB 1305..3248 17..1960 9720 100 Plus
Osi17-RA 3049 CG15598-RA 592..2535 17..1960 9720 100 Plus
Osi17-RD 4068 CG15598-RD 1305..2629 17..1341 6625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6315887..6316541 17..671 3275 100 Plus
3R 32079331 3R 6318164..6318422 906..1164 1295 100 Plus
3R 32079331 3R 6317773..6318007 671..905 1175 100 Plus
3R 32079331 3R 6321810..6321999 1342..1531 950 100 Plus
3R 32079331 3R 6323991..6324172 1640..1821 910 100 Plus
3R 32079331 3R 6320527..6320706 1162..1341 900 100 Plus
3R 32079331 3R 6326655..6326794 1821..1960 700 100 Plus
3R 32079331 3R 6323806..6323917 1531..1642 560 100 Plus
Blast to na_te.dros performed 2014-11-28 05:49:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6875 1467..1622 157 60.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6677..6874 1469..1669 132 54.5 Plus

BO12221.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:01 Download gff for BO12221.complete
Subject Subject Range Query Range Percent Splice Strand
Osi17-RA 1..1947 17..1963 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:36:22 Download gff for BO12221.complete
Subject Subject Range Query Range Percent Splice Strand
Osi17-RA 590..2533 17..1962 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:43 Download gff for BO12221.complete
Subject Subject Range Query Range Percent Splice Strand
Osi17-RA 592..2535 17..1962 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:01 Download gff for BO12221.complete
Subject Subject Range Query Range Percent Splice Strand
Osi17-RA 587..2538 14..1966 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:19:02 Download gff for BO12221.complete
Subject Subject Range Query Range Percent Splice Strand
Osi17-RA 592..2535 17..1962 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:19:02 Download gff for BO12221.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6315887..6316541 17..671 100 -> Plus
3R 6317774..6318007 672..905 100 -> Plus
3R 6318164..6318420 906..1162 100 -> Plus
3R 6320528..6320706 1163..1341 100 -> Plus
3R 6321810..6321999 1342..1531 100 -> Plus
3R 6323807..6323917 1532..1642 100 -> Plus
3R 6323994..6324172 1643..1821 100 -> Plus
3R 6326656..6326794 1822..1962 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:43 Download gff for BO12221.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2141609..2142263 17..671 100 -> Plus
arm_3R 2143496..2143729 672..905 100 -> Plus
arm_3R 2143886..2144142 906..1162 100 -> Plus
arm_3R 2146250..2146428 1163..1341 100 -> Plus
arm_3R 2147532..2147721 1342..1531 100 -> Plus
arm_3R 2149529..2149639 1532..1642 100 -> Plus
arm_3R 2149716..2149894 1643..1821 100 -> Plus
arm_3R 2152378..2152516 1822..1962 98   Plus

BO12221.pep Sequence

Translation from 16 to 1978

> BO12221.pep
MPNTYSALPHNRSSGESQQQWTSSSRNRTCHPVSMARSTSGHLIFLLLIC
LINSAAKADGTARNGRLGRHLSTTPLSHPTVESQPTEEQEMFTESPTESP
EDVELATTTELPPEEDWQPLINATKFPTRKPMDKMAPSDSLLLRLARRFA
SGNELWDGLVRDCYLKPDVSCFQKNVFSYLDNVLDVQDVNVTQRLKFFKN
QVDYQVDKEKEEHSEARAASAETPIEEVTSALYGKSIKFAMTHDLEVDLP
EVMFNGATFRISPRAIEGNGIIAKLELIPKQVVKARLAGAIIQKKIQKFL
RSKLVLSFLALLLIIKIIKIKLFWLLPIVIGVGAAKKLLLKFLLFLFPAL
SHLFKLCSHYQQSYHAPAKYHHHHHLIDHHHTVVPPWHSGEHHSVPEIIY
THPPKGHPSAYLHGAPVHESYGPGFEHFEGAWENSGPGLGSDSRPAHTQH
HPVYVPGQGHHPPQNVPGLTAAAQIAAQYDPSRNNQHPQQPPQQPNHAVQ
EPQLSPEIAAQLKEAIRIQTEQRLIQQQQKILEHQPFVQDGQPLYPLNYD
PFYSPILLKIDKIIEQLGVKNDLCKERIVCSMYKDPATYSPHSNFISAEL
SRDTSELEPVTHANEAVRRFYRLIQAARDGQDQKDCQSLYPQCNMPAKAS
FLDH

BO12221.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:26:10
Subject Length Description Subject Range Query Range Score Percent Strand
Osi17-PB 648 CG15598-PB 1..648 1..648 3439 100 Plus
Osi17-PA 648 CG15598-PA 1..648 1..648 3439 100 Plus
Osi17-PD 750 CG15598-PD 1..564 1..546 2340 81.9 Plus
Osi17-PC 750 CG15598-PC 1..564 1..546 2340 81.9 Plus
Osi17-PD 750 CG15598-PD 545..750 443..648 1104 100 Plus
Osi17-PC 750 CG15598-PC 545..750 443..648 1104 100 Plus
Osi24-PA 533 CG15589-PA 408..505 548..643 259 44.9 Plus