Clone Sequence Records
BO12221.3prime Sequence
851 bp (754 high quality bases) assembled on 2006-04-20
> BO12221.3prime
ATGGTCTAGAAAGCTTGCCTTGGCCGGCATATTGCACTGTGGGTACAGGC
TCTGGCAGTCCTTTTGATCCTGGCCATCCCGGGCAGCCTGAATTAGCCGG
TAGAAGCGACGCACTGCCTCATTCGCATGCGTTACGGGCTCCAGTTCGCT
GGTATCGCGACTGAGCTCCGCGGAAATGAAATTGCTGTGCGGACTGTAGG
TGGCCGGATCCTTGTACATGCTGCACACAATTCGCTCCTTGCAGAGGTCG
TTTTTTACTCCGAGCTGCTCGATGATTTTGTCGATTTTCAGCAGAATGGG
ACTGTAGAACGGATCGTAGTTGAGCGGATACAGCGGCTGTCCATCCTGCA
CGAATGGCTGGTGCTCCAGTATCTTCTGCTGCTGCTGGATGAGCCGCTGC
TCGGTCTGAATGCGGATAGCCTCCTTCAGCTGGGCTGCTATTTCAGGCGA
AAGTTGTGGCTCCTGAACAGCGTGATTTGGCTGCTGCGGCGGCTGCTGCG
GATGCTGATTGTTGCGGGATGGATCGTACTGCGCGGCAATTTGTGCGGCT
GCCGTGAGTCCGGGAACATTTTGCGGCGGATGGTGTCCCTGTCCCGGGAC
GTACACCGGATGGTGCTGCGTGTGTGCCGGCCTTGAGTCGGATCCCAAGC
CAGGACCGCTGTTCTCCCAGGCGCCCTCGAAGTGCTCGAATCCGGGTCCA
TAGCTCTCGTGCACCGGAGCGCCATGGAGATAGGCGGACGGATGGCCCTT
CGGCGGGTGGGTATAAATGATTTCCGGAACCGAGTGGTGCTCACCACTGT
GCCATGGCGGAACAACCGTGTGATGATGATCGATAAGGTGATGGTGGTGG
T
BO12221.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15598-PA | 1947 | Osi17-RA | 1112..1944 | 851..19 | 4165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:59:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi17-RB | 3762 | CG15598-RB | 2416..3248 | 851..19 | 4165 | 100 | Minus |
Osi17-RA | 3049 | CG15598-RA | 1703..2535 | 851..19 | 4165 | 100 | Minus |
Osi17-RD | 4068 | CG15598-RD | 2936..3554 | 637..19 | 3095 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:59:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6321810..6321999 | 637..448 | 950 | 100 | Minus |
3R | 32079331 | 3R | 6323991..6324172 | 339..158 | 910 | 100 | Minus |
3R | 32079331 | 3R | 6320527..6320706 | 817..638 | 900 | 100 | Minus |
3R | 32079331 | 3R | 6326655..6326794 | 158..19 | 700 | 100 | Minus |
3R | 32079331 | 3R | 6323806..6323917 | 448..337 | 560 | 100 | Minus |
3R | 32079331 | 3R | 6318386..6318422 | 851..815 | 185 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 16:59:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6875 | 512..357 | 157 | 60.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6677..6874 | 510..310 | 132 | 54.5 | Minus |
BO12221.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:42 Download gff for
BO12221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15598-PA | 1112..1947 | 16..851 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:55 Download gff for
BO12221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15598-PA | 1112..1947 | 16..851 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:45:07 Download gff for
BO12221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi17-RA | 1703..2540 | 13..851 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:04:48 Download gff for
BO12221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi17-RA | 1703..2540 | 13..851 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:04:48 Download gff for
BO12221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6318386..6318420 | 817..851 | 100 | -> | Minus |
3R | 6320528..6320706 | 638..816 | 100 | -> | Minus |
3R | 6321810..6321999 | 448..637 | 100 | -> | Minus |
3R | 6323807..6323917 | 337..447 | 100 | -> | Minus |
3R | 6323994..6324172 | 158..336 | 100 | -> | Minus |
3R | 6326656..6326799 | 13..157 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:45:07 Download gff for
BO12221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2152378..2152521 | 13..157 | 97 | | Minus |
arm_3R | 2149716..2149894 | 158..336 | 100 | -> | Minus |
arm_3R | 2149529..2149639 | 337..447 | 100 | -> | Minus |
arm_3R | 2144108..2144142 | 817..851 | 100 | -> | Minus |
arm_3R | 2146250..2146428 | 638..816 | 100 | -> | Minus |
arm_3R | 2147532..2147721 | 448..637 | 100 | -> | Minus |
BO12221.5prime Sequence
900 bp (766 high quality bases) assembled on 2006-04-20
> BO12221.5prime
GAAGTTATCAGTCGACATGCCCAACACATACAGTGCTTTGCCCCATAATC
GGAGCTCAGGTGAGAGCCAGCAACAGTGGACATCCTCCAGTAGAAATCGC
ACCTGCCATCCAGTGAGCATGGCCAGATCAACGAGTGGCCACTTGATTTT
CCTCCTCTTGATCTGCCTAATAAACTCGGCCGCCAAAGCGGATGGAACGG
CTCGGAATGGTCGTCTTGGCCGTCATCTCTCTACCACTCCTTTAAGCCAT
CCGACCGTGGAATCGCAGCCAACCGAGGAGCAAGAAATGTTTACCGAGTC
ACCAACGGAATCCCCAGAGGATGTCGAGCTTGCGACGACGACGGAACTAC
CGCCGGAAGAAGACTGGCAGCCTCTGATAAATGCCACCAAGTTTCCCACG
AGGAAGCCGATGGACAAAATGGCTCCCAGTGATTCCCTGCTCCTTAGACT
GGCCCGGCGATTCGCCAGTGGAAACGAGCTGTGGGACGGCCTTGTCCGCG
ATTGCTATCTAAAGCCAGATGTATCTTGCTTCCAAAAGAACGTCTTCAGC
TACCTGGATAACGTTCTGGATGTGCAGGACGTGAATGTGACCCAAAGGCT
CAAGTTCTTCAAGAATCAAGTGGACTACCAAGTGGACAAGGAGAAGGAGG
AGCACTCGGAGGCACGTGCCGCCAGTGCGGAAACCCCGATCGAGGAAGTG
ACCAGCGCTCTATATGGCAAGAGCATCAAGTTTGCCATGACCCACGATCT
AGAGGTGGACCTGCCTGAGGTTATGTTCAATGGCGCCACCTTTCGCATCT
CGCCGCGAGCCATTGAAGGCAATGGAATCATCGCCAAGCTGGAGCTGATT
CCCAAACAGGTAGTCAAAGCCCGACTGGCCGGGGCGATAATCCAAAAAAA
BO12221.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15598-PA | 1947 | Osi17-RA | 1..878 | 17..894 | 4390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:28:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi17-RD | 4068 | CG15598-RD | 1305..2182 | 17..894 | 4390 | 100 | Plus |
Osi17-RC | 3355 | CG15598-RC | 592..1469 | 17..894 | 4390 | 100 | Plus |
Osi17-RB | 3762 | CG15598-RB | 1305..2182 | 17..894 | 4390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:28:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6315887..6316541 | 17..671 | 3275 | 100 | Plus |
3R | 32079331 | 3R | 6317773..6317996 | 671..894 | 1120 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:28:35 has no hits.
BO12221.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:43 Download gff for
BO12221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15598-PA | 1..877 | 17..893 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:57 Download gff for
BO12221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15598-PA | 1..877 | 17..893 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:53:53 Download gff for
BO12221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi17-RB | 1302..2181 | 14..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:29:26 Download gff for
BO12221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi17-RB | 1302..2181 | 14..893 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:29:26 Download gff for
BO12221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6315884..6316541 | 14..671 | 99 | -> | Plus |
3R | 6317774..6317995 | 672..893 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:53:53 Download gff for
BO12221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2141606..2142263 | 14..671 | 99 | -> | Plus |
arm_3R | 2143496..2143717 | 672..893 | 100 | | Plus |
BO12221.complete Sequence
1978 bp assembled on 2008-01-17
GenBank Submission: FJ632363
> BO12221.complete
GAAGTTATCAGTCGACATGCCCAACACATACAGTGCTTTGCCCCATAATC
GGAGCTCAGGTGAGAGCCAGCAACAGTGGACATCCTCCAGTAGAAATCGC
ACCTGCCATCCAGTGAGCATGGCCAGATCAACGAGTGGCCACTTGATTTT
CCTCCTCTTGATCTGCCTAATAAACTCGGCCGCCAAAGCGGATGGAACGG
CTCGGAATGGTCGTCTTGGCCGTCATCTCTCTACCACTCCTTTAAGCCAT
CCGACCGTGGAATCGCAGCCAACCGAGGAGCAAGAAATGTTTACCGAGTC
ACCAACGGAATCCCCAGAGGATGTCGAGCTTGCGACGACGACGGAACTAC
CGCCGGAAGAAGACTGGCAGCCTCTGATAAATGCCACCAAGTTTCCCACG
AGGAAGCCGATGGACAAAATGGCTCCCAGTGATTCCCTGCTCCTTAGACT
GGCCCGGCGATTCGCCAGTGGAAACGAGCTGTGGGACGGCCTTGTCCGCG
ATTGCTATCTAAAGCCAGATGTATCTTGCTTCCAAAAGAACGTCTTCAGC
TACCTGGATAACGTTCTGGATGTGCAGGACGTGAATGTGACCCAAAGGCT
CAAGTTCTTCAAGAATCAAGTGGACTACCAAGTGGACAAGGAGAAGGAGG
AGCACTCGGAGGCACGTGCCGCCAGTGCGGAAACCCCGATCGAGGAAGTG
ACCAGCGCTCTATATGGCAAGAGCATCAAGTTTGCCATGACCCACGATCT
AGAGGTGGACCTGCCTGAGGTTATGTTCAATGGCGCCACCTTTCGCATCT
CGCCGCGAGCCATTGAAGGCAATGGAATCATCGCCAAGCTGGAGCTGATT
CCCAAACAGGTAGTCAAAGCCCGACTGGCCGGGGCGATAATCCAGAAGAA
GATACAAAAATTTCTACGCAGCAAACTGGTGCTGTCATTCCTCGCATTGC
TGCTGATCATTAAAATCATCAAGATCAAGTTGTTCTGGCTCCTGCCAATC
GTCATCGGAGTTGGTGCGGCCAAGAAGCTGCTGCTAAAGTTCCTGCTCTT
CCTGTTCCCAGCGCTGTCGCATCTCTTCAAGCTCTGCTCGCACTACCAGC
AATCCTATCACGCACCCGCCAAGTACCACCACCACCATCACCTTATCGAT
CATCATCACACGGTTGTTCCGCCATGGCACAGTGGTGAGCACCACTCGGT
TCCGGAAATCATTTATACCCACCCGCCGAAGGGCCATCCGTCCGCCTATC
TCCATGGCGCTCCGGTGCACGAGAGCTATGGACCCGGATTCGAGCACTTC
GAGGGCGCCTGGGAGAACAGCGGTCCTGGCTTGGGATCCGACTCAAGGCC
GGCACACACGCAGCACCATCCGGTGTACGTCCCGGGACAGGGACACCATC
CGCCGCAAAATGTTCCCGGACTCACGGCAGCCGCACAAATTGCCGCGCAG
TACGATCCATCCCGCAACAATCAGCATCCGCAGCAGCCGCCGCAGCAGCC
AAATCACGCTGTTCAGGAGCCACAACTTTCGCCTGAAATAGCAGCCCAGC
TGAAGGAGGCTATCCGCATTCAGACCGAGCAGCGGCTCATCCAGCAGCAG
CAGAAGATACTGGAGCACCAGCCATTCGTGCAGGATGGACAGCCGCTGTA
TCCGCTCAACTACGATCCGTTCTACAGTCCCATTCTGCTGAAAATCGACA
AAATCATCGAGCAGCTCGGAGTAAAAAACGACCTCTGCAAGGAGCGAATT
GTGTGCAGCATGTACAAGGATCCGGCCACCTACAGTCCGCACAGCAATTT
CATTTCCGCGGAGCTCAGTCGCGATACCAGCGAACTGGAGCCCGTAACGC
ATGCGAATGAGGCAGTGCGTCGCTTCTACCGGCTAATTCAGGCTGCCCGG
GATGGCCAGGATCAAAAGGACTGCCAGAGCCTGTACCCACAGTGCAATAT
GCCGGCCAAGGCAAGCTTTCTAGACCAT
BO12221.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:49:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi17-RB | 1947 | CG15598-PB | 1..1944 | 17..1960 | 9720 | 100 | Plus |
Osi17-RA | 1947 | CG15598-PA | 1..1944 | 17..1960 | 9720 | 100 | Plus |
Osi17-RD | 2253 | CG15598-PD | 1..1325 | 17..1341 | 6625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:49:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi17-RB | 3762 | CG15598-RB | 1305..3248 | 17..1960 | 9720 | 100 | Plus |
Osi17-RA | 3049 | CG15598-RA | 592..2535 | 17..1960 | 9720 | 100 | Plus |
Osi17-RD | 4068 | CG15598-RD | 1305..2629 | 17..1341 | 6625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:49:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6315887..6316541 | 17..671 | 3275 | 100 | Plus |
3R | 32079331 | 3R | 6318164..6318422 | 906..1164 | 1295 | 100 | Plus |
3R | 32079331 | 3R | 6317773..6318007 | 671..905 | 1175 | 100 | Plus |
3R | 32079331 | 3R | 6321810..6321999 | 1342..1531 | 950 | 100 | Plus |
3R | 32079331 | 3R | 6323991..6324172 | 1640..1821 | 910 | 100 | Plus |
3R | 32079331 | 3R | 6320527..6320706 | 1162..1341 | 900 | 100 | Plus |
3R | 32079331 | 3R | 6326655..6326794 | 1821..1960 | 700 | 100 | Plus |
3R | 32079331 | 3R | 6323806..6323917 | 1531..1642 | 560 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 05:49:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6875 | 1467..1622 | 157 | 60.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6677..6874 | 1469..1669 | 132 | 54.5 | Plus |
BO12221.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:01 Download gff for
BO12221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi17-RA | 1..1947 | 17..1963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:36:22 Download gff for
BO12221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi17-RA | 590..2533 | 17..1962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:43 Download gff for
BO12221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi17-RA | 592..2535 | 17..1962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:01 Download gff for
BO12221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi17-RA | 587..2538 | 14..1966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:19:02 Download gff for
BO12221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi17-RA | 592..2535 | 17..1962 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:19:02 Download gff for
BO12221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6315887..6316541 | 17..671 | 100 | -> | Plus |
3R | 6317774..6318007 | 672..905 | 100 | -> | Plus |
3R | 6318164..6318420 | 906..1162 | 100 | -> | Plus |
3R | 6320528..6320706 | 1163..1341 | 100 | -> | Plus |
3R | 6321810..6321999 | 1342..1531 | 100 | -> | Plus |
3R | 6323807..6323917 | 1532..1642 | 100 | -> | Plus |
3R | 6323994..6324172 | 1643..1821 | 100 | -> | Plus |
3R | 6326656..6326794 | 1822..1962 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:43 Download gff for
BO12221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2141609..2142263 | 17..671 | 100 | -> | Plus |
arm_3R | 2143496..2143729 | 672..905 | 100 | -> | Plus |
arm_3R | 2143886..2144142 | 906..1162 | 100 | -> | Plus |
arm_3R | 2146250..2146428 | 1163..1341 | 100 | -> | Plus |
arm_3R | 2147532..2147721 | 1342..1531 | 100 | -> | Plus |
arm_3R | 2149529..2149639 | 1532..1642 | 100 | -> | Plus |
arm_3R | 2149716..2149894 | 1643..1821 | 100 | -> | Plus |
arm_3R | 2152378..2152516 | 1822..1962 | 98 | | Plus |
BO12221.pep Sequence
Translation from 16 to 1978
> BO12221.pep
MPNTYSALPHNRSSGESQQQWTSSSRNRTCHPVSMARSTSGHLIFLLLIC
LINSAAKADGTARNGRLGRHLSTTPLSHPTVESQPTEEQEMFTESPTESP
EDVELATTTELPPEEDWQPLINATKFPTRKPMDKMAPSDSLLLRLARRFA
SGNELWDGLVRDCYLKPDVSCFQKNVFSYLDNVLDVQDVNVTQRLKFFKN
QVDYQVDKEKEEHSEARAASAETPIEEVTSALYGKSIKFAMTHDLEVDLP
EVMFNGATFRISPRAIEGNGIIAKLELIPKQVVKARLAGAIIQKKIQKFL
RSKLVLSFLALLLIIKIIKIKLFWLLPIVIGVGAAKKLLLKFLLFLFPAL
SHLFKLCSHYQQSYHAPAKYHHHHHLIDHHHTVVPPWHSGEHHSVPEIIY
THPPKGHPSAYLHGAPVHESYGPGFEHFEGAWENSGPGLGSDSRPAHTQH
HPVYVPGQGHHPPQNVPGLTAAAQIAAQYDPSRNNQHPQQPPQQPNHAVQ
EPQLSPEIAAQLKEAIRIQTEQRLIQQQQKILEHQPFVQDGQPLYPLNYD
PFYSPILLKIDKIIEQLGVKNDLCKERIVCSMYKDPATYSPHSNFISAEL
SRDTSELEPVTHANEAVRRFYRLIQAARDGQDQKDCQSLYPQCNMPAKAS
FLDH
BO12221.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:26:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi17-PB | 648 | CG15598-PB | 1..648 | 1..648 | 3439 | 100 | Plus |
Osi17-PA | 648 | CG15598-PA | 1..648 | 1..648 | 3439 | 100 | Plus |
Osi17-PD | 750 | CG15598-PD | 1..564 | 1..546 | 2340 | 81.9 | Plus |
Osi17-PC | 750 | CG15598-PC | 1..564 | 1..546 | 2340 | 81.9 | Plus |
Osi17-PD | 750 | CG15598-PD | 545..750 | 443..648 | 1104 | 100 | Plus |
Osi17-PC | 750 | CG15598-PC | 545..750 | 443..648 | 1104 | 100 | Plus |
Osi24-PA | 533 | CG15589-PA | 408..505 | 548..643 | 259 | 44.9 | Plus |