Clone BO12223 Report

Search the DGRC for BO12223

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:122
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptSNF4Agamma-RC
Protein status:BO12223.pep:
Sequenced Size:2752

Clone Sequence Records

BO12223.3prime Sequence

821 bp (818 high quality bases) assembled on 2006-04-20

> BO12223.3prime
ATGGTCTAGAAAGCTTGCTTCACTAACCAACGCCATTTCTTGCGCCGCGG
GCGTCAGTGACTGGCCCAAAGCGGAGGCAGCGGACACGGCGCTGCTCATC
CCATCGTCCTCGTCGTCGTCCATCGATGCATTCTTGCGCTCAATCTCCGC
TAACGCTGGCTGGTCATCATCATCACAATTGCTGCGCTCGACCTGGTCGG
CAGCTTCTTCTTCCTGCGCCTCATCGGCAAAGGACACTTCTACGGGGCTG
TTGTTGCTATCACCATTAGCTGTCGCAGCCGTCGTCGTCTGGTCGTGCTG
GTTATTGTTGGCTTTATCCTCACTGGCGGACTTATTGTTATCACTGTCGG
CATCGTCGCTCCTCGCCGGCGCCGTCTCCTCTTCGGGTATGTCCTCGATC
AGGCTGCGATTGCCGGATCCGGCCGATGGACTGCGAGGCGGGGTTGTTGT
CGTCGCCGCTGCGGCTGTCGCTGGTATTTCAACCTCAGCCACTTTGCGCA
GCAGAACGGGATCGGACGCACGCAATGAGCTCTCCGAGCCACCGACGCCT
TCACCGCTTGGTCGCAGGACGAGGTAGAGCAGTATATCGGACAGCGAGAT
AATGCCGATCACTTTGCGATTCTCGTCGACCACCACCAGTCGATGTACTT
CGGCGCGGACGATTCGTTCCATGATCGTGTAGAGCGATTCGTCCAGATTG
CACTTCTGCACGCCCTCGAACCACTCGTTCCGGTGCTCGTTGGCTTTGCG
CAGCGAAACATCGAGATCGTTGTAGGTTTTCTCGGCGGCGAGATTAATCA
CATCAAACTTTGCGTAAATGT

BO12223.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG17299-PK 2721 SNF4Agamma-RK 1916..2718 821..19 4015 100 Minus
CG17299-PL 2157 SNF4Agamma-RL 1352..2154 821..19 4015 100 Minus
CG17299-PI 1617 SNF4Agamma-RI 812..1614 821..19 4015 100 Minus
CG17299-PJ 2721 SNF4Agamma-RJ 1916..2718 821..19 4015 100 Minus
CG17299-PA 2844 SNF4Agamma-RA 2039..2841 821..19 4015 100 Minus
CG17299-PB 2844 SNF4Agamma-RB 2039..2841 821..19 4015 100 Minus
CG17299-PF 4203 SNF4Agamma-RF 3398..4200 821..19 4015 100 Minus
CG17299-PC 2721 SNF4Agamma-RC 1916..2718 821..19 4015 100 Minus
CG17299-PE 2721 SNF4Agamma-RE 1916..2718 821..19 4015 100 Minus
CG17299-PG 2445 SNF4Agamma-RG 1640..2442 821..19 4015 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
SNF4Agamma-RE 3308 CG17299-RE 2343..3145 821..19 4015 100 Minus
SNF4Agamma-RC 3197 CG17299-RC 2232..3034 821..19 4015 100 Minus
SNF4Agamma-RG 2786 CG17299-RG 1821..2623 821..19 4015 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:30:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21211748..21212524 795..19 3885 100 Minus
Blast to na_te.dros performed on 2015-01-31 12:30:42 has no hits.

BO12223.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:46 Download gff for BO12223.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17299-PB 2039..2844 15..821 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:01 Download gff for BO12223.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17299-PG 1640..2445 15..821 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 00:00:53 Download gff for BO12223.3prime
Subject Subject Range Query Range Percent Splice Strand
SNF4Agamma-RG 1821..2630 12..821 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:05:25 Download gff for BO12223.3prime
Subject Subject Range Query Range Percent Splice Strand
SNF4Agamma-RG 1821..2630 12..821 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:05:25 Download gff for BO12223.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21211565..21211590 796..821 100 -> Minus
3R 21211748..21212531 12..795 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 00:00:53 Download gff for BO12223.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17037287..17037312 796..821 100 -> Minus
arm_3R 17037470..17038253 12..795 99   Minus

BO12223.5prime Sequence

809 bp (765 high quality bases) assembled on 2006-04-20

> BO12223.5prime
GAAGTTATCAGTCGACATGCATGGAATAACACACCTGTACCGCCAGCATG
CCGTGGAAAAACAGCTGAGCGGTGGCGAGAGCTGGTCCCGCCAAATTTAC
CCGAGCTACGGCAGCAGTGCCGATGCCTCCTCGCAGGGCAGTCGCCTCTA
CAGCGTGGACTCCTCCAGCAGCTCCAGCTCCAATTCCAATAATTCCGGAG
GTGGAGGCAGTGGAACTGCAGGGGTTGAGAATTTGGGAGGAGTCACCGGC
AGCGCCTACGCCCAGTGGCAGAGCGACCGACACTCTCTGCCACAGGCTGT
GCCCGATGCCCCTCGGTCGCTGGCTAACCACCACTACCGCAACTCGCCCA
CCCACCAAGCCCACTACCAGCAGCCCACTAGCGGCAGTCTCAAGCGGACA
CCCTCCTCGAAGCGCAGCTTCCTGGAACGATCTCACAGTCCGGCTATATA
TGGTAGCATGCGTCGCAGTGCAGGTCCGGACTTCGGCTCTCCCCCGCCCA
CCGCACCCGTCGGTGGAGGCGGCTACTTCCCACACGATCTCGACGACATC
TACGAGAGCCAGACGGACCATCAGTATTTCACCCACACGGGTGCTAGCGG
ACCACAGCAGCAGCGACCCACGGCTATCTCGATCTTTCATCGAGTGAGTG
CTGCCCACACCTCGCTGGACGACTATACCTTGCCCGGGGATGCATCGCGC
CAGTCCATGATAGTACAGACAGCGGGGTGAGCAGCGGTCCTTCATCGCCA
CGTTCGACAACTCGTCTTCGCCAAAGTCTCACTCACGACAGGACCCCACA
CTCGCCCAT

BO12223.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG17299-PK 2721 SNF4Agamma-RK 1..694 17..710 3470 100 Plus
CG17299-PJ 2721 SNF4Agamma-RJ 1..694 17..710 3470 100 Plus
CG17299-PC 2721 SNF4Agamma-RC 1..694 17..710 3470 100 Plus
CG17299-PE 2721 SNF4Agamma-RE 1..694 17..710 3470 100 Plus
CG17299-PK 2721 SNF4Agamma-RK 695..725 710..740 155 100 Plus
CG17299-PJ 2721 SNF4Agamma-RJ 695..725 710..740 155 100 Plus
CG17299-PC 2721 SNF4Agamma-RC 695..725 710..740 155 100 Plus
CG17299-PE 2721 SNF4Agamma-RE 695..725 710..740 155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:33:18
Subject Length Description Subject Range Query Range Score Percent Strand
SNF4Agamma-RE 3308 CG17299-RE 428..1231 17..807 3695 98.4 Plus
SNF4Agamma-RC 3197 CG17299-RC 317..1120 17..807 3695 98.4 Plus
SNF4Agamma-RJ 3675 CG17299-RJ 795..1598 17..807 3695 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:33:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21200971..21201408 17..454 2190 100 Plus
3R 32079331 3R 21201685..21201971 455..740 1385 99.7 Plus
Blast to na_te.dros performed on 2015-02-13 02:33:16 has no hits.

BO12223.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:47 Download gff for BO12223.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17299-PC 1..780 17..789 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:03 Download gff for BO12223.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17299-PC 1..780 17..789 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:12:52 Download gff for BO12223.5prime
Subject Subject Range Query Range Percent Splice Strand
SNF4Agamma-RJ 790..1574 9..789 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:43:37 Download gff for BO12223.5prime
Subject Subject Range Query Range Percent Splice Strand
SNF4Agamma-RJ 790..1574 9..789 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:43:37 Download gff for BO12223.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21200966..21201408 9..454 99 -> Plus
3R 21201685..21202026 455..789 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:12:52 Download gff for BO12223.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17026688..17027130 9..454 99 -> Plus
arm_3R 17027407..17027748 455..789 97   Plus

BO12223.complete Sequence

2752 bp assembled on 2008-01-17

GenBank Submission: FJ632364

> BO12223.complete
GAAGTTATCAGTCGACATGCATGGAATAACACACCTGTACCGCCAGCATG
CCGTGGAAAAACAGCTGAGCGGTGGCGAGAGCTGGTCCCGCCAAATTTAC
CCGAGCTACGGCAGCAGTGCCGATGCCTCCTCGCAGGGCAGTCGCCTCTA
CAGCGTGGACTCCTCCAGCAGCTCCAGCTCCAATTCCAATAATTCCGGAG
GTGGAGGCAGTGGAACTGCAGGGGTTGAGAATTTGGGAGGAGTCACCGGC
AGCGCCTACGCCCAGTGGCAGAGCGACCGACACTCTCTGCCACAGGCTGT
GCCCGATGCCCCTCGGTCGCTGGCTAACCACCACTACCGCAACTCGCCCA
CCCACCAAGCCCACTACCAGCAGCCCACTAGCGGCAGTCTCAAGCGGACA
CCCTCCTCGAAGCGCAGCTTCCTGGAACGATCTCACAGTCCGGCTATATA
TGGTAGCATGCGTCGCAGTGCAGGTCCGGACTTCGGCTCTCCCCCGCCCA
CCGCACCCGTCGGTGGAGGCGGCTACTTCCCACACGATCTCGACGACATC
TACGAGAGCCAGACGGACCATCAGTATTTCACCCACACGGGTGCTAGCGG
ACCACAGCAGCAGCGACCCACGGCTATCTCGATCTTTCATCGAGTGAGTG
CTGCCCACACCTCGCTGGACGACTATACCTTGCCCGGGGATGCATCGCGC
CAGTCCATGAATAGTACAGACAGCGGGGTGAGCAGCGGTCCCTTCAATCG
CCAGCGTTTCGACAACTCGTCATTCGCCAAGAGTCTCAGCATCGACGAAC
AGGACCCACAGCACTCGCCCCATAAGGAAGGTCACAGCAAGCACGGAAAG
CACCATCACCATCATAGCCATCACCACCATTCGATCCACGAGCTAGTGAA
GCATTTTGGCAAAAAGATGCACCTGTGGCCGAGGAAGCACCACGACGCCC
AGAGCGTTTGCACCTCGCCACAGAACGATCCGCAGGAGAACTTCCGCACC
AGATCCAAGAGCTTGGATGTGAACACGCTCAGTCGCCCCAACCGCATTCT
CGATGACTGCGGGGCCACCTACAAGATATACGATCGCATAGTCAAAGAAG
GTGCTCACATGCGTCGTGCCTCCGCGGATTTGGAGAAACGTCGTGCATCA
GTTGGTGCCGCAGGTCGAGGACTGCGAGGGGATGGTACTTTGGATCCACA
CCATGCAGCCATCCTCTTCAGAGACTCACGAGGGTTGCCTGTCGCTGATC
CGTTCCTAGAGAAAGTCAATCTATCAGATCTGGAAGAGGACGACTCACAG
ATCTTCGTGAAGTTCTTTCGTTTTCACAAGTGCTATGATCTGATACCCAC
CTCCGCCAAGTTGGTTGTCTTCGACACCCAGCTTCTTGTAAAGAAGGCCT
TCTACGCCCTCGTCTACAACGGTGTGCGAGCGGCACCGCTCTGGGATTCG
GAGAAGCAACAGTTCGTGGGCATGCTAACCATCACGGACTTTATCAAGAT
CCTGCAAATGTATTACAAATCGCCAAATGCGTCCATGGAGCAGCTGGAAG
AGCACAAACTGGACACGTGGCGGAGCGTGCTGCACAACCAGGTGATGCCG
TTGGTCAGCATCGGACCGGATGCGTCCCTCTACGATGCCATCAAAATTCT
CATCCACAGCCGCATACATCGCCTGCCCGTCATCGATCCGGCGACCGGCA
ATGTCCTCTACATCCTGACACATAAACGCATACTTAGGTTCCTTTTCCTA
TACATTAATGAATTACCAAAGCCCGCGTACATGCAAAAAAGTTTGCGCGA
ACTGAAGATTGGCACCTATAACAACATCGAGACCGCCGACGAGACGACGA
GCATCATCACGGCGCTCAAGAAATTTGTGGAGCGACGAGTCTCAGCCCTG
CCACTAGTGGATTCCGATGGTCGCCTCGTTGACATTTACGCAAAGTTTGA
TGTGATTAATCTCGCCGCCGAGAAAACCTACAACGATCTCGATGTTTCGC
TGCGCAAAGCCAACGAGCACCGGAACGAGTGGTTCGAGGGCGTGCAGAAG
TGCAATCTGGACGAATCGCTCTACACGATCATGGAACGAATCGTCCGCGC
CGAAGTACATCGACTGGTGGTGGTCGACGAGAATCGCAAAGTGATCGGCA
TTATCTCGCTGTCCGATATACTGCTCTACCTCGTCCTGCGACCAAGCGGT
GAAGGCGTCGGTGGCTCGGAGAGCTCATTGCGTGCGTCCGATCCCGTTCT
GCTGCGCAAAGTGGCTGAGGTTGAAATACCAGCGACAGCCGCAGCGGCGA
CGACAACAACCCCGCCTCGCAGTCCATCGGCCGGATCCGGCAATCGCAGC
CTGATCGAGGACATACCCGAAGAGGAGACGGCGCCGGCGAGGAGCGACGA
TGCCGACAGTGATAACAATAAGTCCGCCAGTGAGGATAAAGCCAACAATA
ACCAGCACGACCAGACGACGACGGCTGCGACAGCTAATGGTGATAGCAAC
AACAGCCCCGTAGAAGTGTCCTTTGCCGATGAGGCGCAGGAAGAAGAAGC
TGCCGACCAGGTCGAGCGCAGCAATTGTGATGATGATGACCAGCCAGCGT
TAGCGGAGATTGAGCGCAAGAATGCATCGATGGACGACGACGAGGACGAT
GGGATGAGCAGCGCCGTGTCCGCTGCCTCCGCTTTGGGCCAGTCACTGAC
GCCCGCGGCGCAAGAAATGGCGTTGGTTAGTGAAGCAAGCTTTCTAGACC
AT

BO12223.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:32:17
Subject Length Description Subject Range Query Range Score Percent Strand
SNF4Agamma-RE 2721 CG17299-PE 1..2718 17..2734 13575 100 Plus
SNF4Agamma-RC 2721 CG17299-PC 1..2718 17..2734 13575 100 Plus
SNF4Agamma-RJ 2721 CG17299-PJ 1..2718 17..2734 13575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:32:18
Subject Length Description Subject Range Query Range Score Percent Strand
SNF4Agamma-RE 3308 CG17299-RE 428..3145 17..2734 13575 100 Plus
SNF4Agamma-RC 3197 CG17299-RC 317..3034 17..2734 13575 100 Plus
SNF4Agamma-RJ 3675 CG17299-RJ 795..3512 17..2734 13575 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21211748..21212524 1958..2734 3885 100 Plus
3R 32079331 3R 21201685..21202332 455..1102 3240 100 Plus
3R 32079331 3R 21200971..21201408 17..454 2190 100 Plus
3R 32079331 3R 21210788..21211080 1283..1575 1465 100 Plus
3R 32079331 3R 21211387..21211590 1754..1957 1020 100 Plus
3R 32079331 3R 21211141..21211319 1575..1753 895 100 Plus
3R 32079331 3R 21202450..21202585 1099..1234 680 100 Plus
3R 32079331 3R 21207618..21207667 1234..1283 235 98 Plus
Blast to na_te.dros performed on 2014-11-28 05:32:16 has no hits.

BO12223.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:03 Download gff for BO12223.complete
Subject Subject Range Query Range Percent Splice Strand
SNF4Agamma-RC 1..2721 17..2738 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:35:02 Download gff for BO12223.complete
Subject Subject Range Query Range Percent Splice Strand
SNF4Agamma-RC 315..3032 17..2736 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:05 Download gff for BO12223.complete
Subject Subject Range Query Range Percent Splice Strand
SNF4Agamma-RJ 795..3512 17..2736 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:03 Download gff for BO12223.complete
Subject Subject Range Query Range Percent Splice Strand
SNF4Agamma-RC 310..3039 9..2741 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:13:15 Download gff for BO12223.complete
Subject Subject Range Query Range Percent Splice Strand
SNF4Agamma-RJ 795..3512 17..2736 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:13:15 Download gff for BO12223.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21200971..21201408 17..454 100 -> Plus
3R 21201685..21202330 455..1100 100 -> Plus
3R 21202452..21202585 1101..1234 100 -> Plus
3R 21207619..21207667 1235..1283 97 -> Plus
3R 21210789..21211079 1284..1574 100 -> Plus
3R 21211141..21211319 1575..1753 100 -> Plus
3R 21211387..21211590 1754..1957 100 -> Plus
3R 21211748..21212524 1958..2736 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:05 Download gff for BO12223.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17037109..17037312 1754..1957 100 -> Plus
arm_3R 17026693..17027130 17..454 100 -> Plus
arm_3R 17027407..17028052 455..1100 100 -> Plus
arm_3R 17028174..17028307 1101..1234 100 -> Plus
arm_3R 17033341..17033389 1235..1283 97 -> Plus
arm_3R 17036511..17036801 1284..1574 100 -> Plus
arm_3R 17036863..17037041 1575..1753 100 -> Plus
arm_3R 17037470..17038246 1958..2736 99   Plus

BO12223.pep Sequence

Translation from 16 to 2752

> BO12223.pep
MHGITHLYRQHAVEKQLSGGESWSRQIYPSYGSSADASSQGSRLYSVDSS
SSSSSNSNNSGGGGSGTAGVENLGGVTGSAYAQWQSDRHSLPQAVPDAPR
SLANHHYRNSPTHQAHYQQPTSGSLKRTPSSKRSFLERSHSPAIYGSMRR
SAGPDFGSPPPTAPVGGGGYFPHDLDDIYESQTDHQYFTHTGASGPQQQR
PTAISIFHRVSAAHTSLDDYTLPGDASRQSMNSTDSGVSSGPFNRQRFDN
SSFAKSLSIDEQDPQHSPHKEGHSKHGKHHHHHSHHHHSIHELVKHFGKK
MHLWPRKHHDAQSVCTSPQNDPQENFRTRSKSLDVNTLSRPNRILDDCGA
TYKIYDRIVKEGAHMRRASADLEKRRASVGAAGRGLRGDGTLDPHHAAIL
FRDSRGLPVADPFLEKVNLSDLEEDDSQIFVKFFRFHKCYDLIPTSAKLV
VFDTQLLVKKAFYALVYNGVRAAPLWDSEKQQFVGMLTITDFIKILQMYY
KSPNASMEQLEEHKLDTWRSVLHNQVMPLVSIGPDASLYDAIKILIHSRI
HRLPVIDPATGNVLYILTHKRILRFLFLYINELPKPAYMQKSLRELKIGT
YNNIETADETTSIITALKKFVERRVSALPLVDSDGRLVDIYAKFDVINLA
AEKTYNDLDVSLRKANEHRNEWFEGVQKCNLDESLYTIMERIVRAEVHRL
VVVDENRKVIGIISLSDILLYLVLRPSGEGVGGSESSLRASDPVLLRKVA
EVEIPATAAAATTTTPPRSPSAGSGNRSLIEDIPEEETAPARSDDADSDN
NKSASEDKANNNQHDQTTTAATANGDSNNSPVEVSFADEAQEEEAADQVE
RSNCDDDDQPALAEIERKNASMDDDEDDGMSSAVSAASALGQSLTPAAQE
MALVSEASFLDH

BO12223.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:26:07
Subject Length Description Subject Range Query Range Score Percent Strand
SNF4Agamma-PE 906 CG17299-PE 1..906 1..906 4712 100 Plus
SNF4Agamma-PC 906 CG17299-PC 1..906 1..906 4712 100 Plus
SNF4Agamma-PJ 906 CG17299-PJ 1..906 1..906 4712 100 Plus
SNF4Agamma-PQ 906 CG17299-PQ 1..906 1..906 4712 100 Plus
SNF4Agamma-PP 906 CG17299-PP 1..906 1..906 4712 100 Plus