Clone Sequence Records
BO12224.5prime Sequence
841 bp (754 high quality bases) assembled on 2006-04-20
> BO12224.5prime
GAAGTTATCAGTCGACATGGCTCTGACCAATTTCTCGCTGCCCTTCGGTG
CCCTGGGCCAGCCCTGGGGAGTCACCATAGCTCCCCTGCATCCAATCCAC
CAGTTGGCCAGCAACACAAATAATCTGCTCTACTCGCCAGCTGACCACCA
GCAGCAGACTCCCGCGGAGGCAGCCGCCGATCCGGAGTACTTCAAGAACA
ATCCCTATGCGCCGCCGCAATCGGGTGGTTATCAATATCAAAATACAGCT
GGACGACGCAAGCAGAGTAACGCCTATTTGCCACCGACAGCGCCGAATGC
TGTCCGGAATTCCGTTTACCACATCCAGCAGGTACAGCAGACGCAGCAGC
AGCAAACGCAACAACAACACCAGCAGCAGGATCAGCATGAGAACAGCGTG
TCCTTCCAGAGCAGCAGTTCCAGATCAAGTTCGAGCAGCACCACGGGCCA
AAGTTCCATCCAGCTGACACAGACTCATGCGAGTGGCCGGGGACCGGCGG
AGGGTTCGTACTCCCGTTATCCCGGACAGCAAGCACAGCCGCCGCAGCAG
CAGCAACCGCAACAGAAGCAATATTTCAATGCACACGGCAGTGCCAGTGC
CACTTTTACTAAGAACAGCGGCAGCTTTAGTATTACCAGCTTTGGCAGCA
GGCAGCAGCAGCAGCAGCCACCGCAGCCGCAACAACCACCGCCATCGCAA
CAGCAGCAACCACCACCTGCACCACCGCCCCAAAGGTCCAGGCAGGCCAA
GCCGGAGGCTCAACCAGCTCAGACATACGGAGTTGCCCCGCCGGAGAATT
ATCCGGAACGAGCACCAGGATTTACACGGGTTCAGGCTGGT
BO12224.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7104-PA | 1836 | Spz3-RA | 1..825 | 17..841 | 4125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:49:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spz3-RA | 2552 | CG7104-RA | 406..1231 | 16..841 | 4130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:49:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7878322..7879147 | 841..16 | 4130 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 08:49:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6531..6960 | 333..762 | 302 | 57.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2739 | 335..765 | 271 | 57.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2333..2540 | 526..733 | 256 | 62.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2405..2856 | 318..764 | 238 | 55.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2608..3012 | 318..716 | 181 | 53.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6787..6946 | 526..694 | 177 | 61 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2376..2541 | 527..695 | 163 | 58.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6815..6997 | 527..712 | 156 | 58.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6923 | 358..563 | 148 | 57 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2592..2661 | 656..726 | 145 | 69 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1118..1175 | 527..583 | 125 | 70.7 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3279..3369 | 530..617 | 121 | 66.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1537..1601 | 525..585 | 117 | 69.2 | Plus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 841..895 | 532..587 | 115 | 69.6 | Plus |
BO12224.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:48 Download gff for
BO12224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spz3-PA | 1..825 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:04 Download gff for
BO12224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7104-PA | 1..825 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:42:30 Download gff for
BO12224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spz3-RA | 406..1231 | 16..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:32:28 Download gff for
BO12224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spz3-RA | 406..1231 | 16..841 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:32:28 Download gff for
BO12224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7878322..7879147 | 16..841 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:42:30 Download gff for
BO12224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7878322..7879147 | 16..841 | 100 | | Minus |
BO12224.complete Sequence
1867 bp assembled on 2008-08-14
GenBank Submission: FJ632365
> BO12224.complete
GAAGTTATCAGTCGACATGGCTCTGACCAATTTCTCGCTGCCCTTCGGTG
CCCTGGGCCAGCCCTGGGGAGTCACCATAGCTCCCCTGCATCCAATCCAC
CAGTTGGCCAGCAACACAAATAATCTGCTCTACTCGCCAGCTGACCACCA
GCAGCAGACTCCCGCGGAGGCAGCCGCCGATCCGGAGTACTTCAAGAACA
ATCCCTATGCGCCGCCGCAATCGGGTGGTTATCAATATCAAAATACAGCT
GGACGACGCAAGCAGAGTAACGCCTATTTGCCACCGACAGCGCCGAATGC
TGTCCGGAATTCCGTTTACCACATCCAGCAGGTACAGCAGACGCAGCAGC
AGCAAACGCAACAACAACACCAGCAGCAGGATCAGCATGAGAACAGCGTG
TCCTTCCAGAGCAGCAGTTCCAGATCAAGTTCGAGCAGCACCACGGGCCA
AAGTTCCATCCAGCTGACACAGACTCATGCGAGTGGCCGGGGACCGGCGG
AGGGTTCGTACTCCCGTTATCCCGGACAGCAAGCACAGCCGCCGCAGCAG
CAGCAACCGCAACAGAAGCAATATTTCAATGCACACGGCAGTGCCAGTGC
CACTTTTACTAAGAACAGCGGCAGCTTTAGTATTACCAGCTTTGGCAGCA
GGCAGCAGCAGCAGCAGCCACCGCAGCCGCAACAACCACCGCCATCGCAA
CAGCAGCAACCACCACCTGCACCACCGCCCCAAAGGTCCAGGCAGGCCAA
GCCGGAGGCTCAACCAGCTCAGACATACGGAGTTGCCCCGCCGGAGAATT
ATCCGGAACGAGCACCAGGATTTACACGGGTTCAGGCTGGTCAGGGATCC
AGGACTCAGGTACACGCCGTTCTAGACTACGACGTGGAGGAGGGTGAGGA
GGATGAGGAGGAGGACGGAGAGGAGGAAGGACAGTTCTACGAAGGCCAAG
AGAATGATAAGTCGAATAACAATCAGATGCCCACAGTGACGCCCATCCAG
GGACCGATTTACTTGAAGAACGGGACGGTTCCAGTGGTGCCGCTCTTCTC
CTATCCGAAACTCAACAACGGATCGTTCCTACAGATTCCGATCTGGTGGA
CGGCTTTGTCGGTGGCTTTGGGACTGGATGTGCGCGGCGATGTCATCAAG
GGAGTGCCGTGCATCAAGCGATATCATCAACTGTTTTGCCCCACGGCCGG
CAATAGTTATCCCATTGACAAGATTGAACGTTTCATAGACGACAACAAGG
CCCTGATGCGACGGATGTACGGCGACTTTGAGATGAACATGGAGGGTCCT
GGCGGAGGAGGTGGCAGACAACAAGGCAAGGTGCGAAAGCGTCGCTTCAT
AGACGAGCCGGATATATTCATACCCCCGGGAGCATTTGCTGCCAATGCCG
GGGAGACCGTCGAAGCCGGAGATAGTTACTTTGGCCAACTCCGGAAAAAG
CGCCAAGCTGCCGCCGGAGGAAGTCGAAATAGAGGCGGATCTGCCGGAGG
AAGTGGCAATGGGAACACGAATGCCAATAGGCAACCGGGAAATAAGAATG
GTAGTTCGGGCACTGGAAGACTCGATGCCTGCGAGTCGAAGATTGAAATT
GTCACACCGTACTGGGCATCGAACTCCGCGGGTAAGATCAGAGCCATCGT
AAATACTCAGCATTTCGAGCAGGCGATTCACCAGGAGGTTTGCAGCAATA
CCCAAACTCCAAGATGTGAGGGCGAGTGTGGATGCGAGCAGAAATACAAA
TGGCATAGATTACTCGCCTACGATCCTGATAACGATTGCAAGGGCATTTT
TATGGATTGGTTCCTGTTTCCTTCGTGCTGTGTCTGTAGATGTAATCCCG
CAAGCTTTCTAGACCAT
BO12224.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:06:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spz3-RA | 1836 | CG7104-PA | 1..1833 | 17..1849 | 9165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:06:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spz3-RA | 2552 | CG7104-RA | 406..2239 | 16..1849 | 9170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:06:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7878207..7879147 | 956..16 | 4705 | 100 | Minus |
2L | 23513712 | 2L | 7874032..7874511 | 1695..1216 | 2400 | 100 | Minus |
2L | 23513712 | 2L | 7873808..7873968 | 1849..1689 | 790 | 99.4 | Minus |
2L | 23513712 | 2L | 7876031..7876165 | 1090..956 | 675 | 100 | Minus |
2L | 23513712 | 2L | 7875213..7875338 | 1215..1090 | 630 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 13:06:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6531..6960 | 333..762 | 302 | 57.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2739 | 335..765 | 271 | 57.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2333..2540 | 526..733 | 256 | 62.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2405..2856 | 318..764 | 238 | 55.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6787..6946 | 526..694 | 177 | 61 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2376..2541 | 527..695 | 163 | 58.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6815..6997 | 527..712 | 156 | 58.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2592..2661 | 656..726 | 145 | 69 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1118..1175 | 527..583 | 125 | 70.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1537..1601 | 525..585 | 117 | 69.2 | Plus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 841..895 | 532..587 | 115 | 69.6 | Plus |
BO12224.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:24 Download gff for
BO12224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spz3-RA | 404..2243 | 16..1857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:29 Download gff for
BO12224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spz3-RA | 407..2239 | 17..1851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:20 Download gff for
BO12224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spz3-RA | 405..2237 | 17..1851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:58 Download gff for
BO12224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spz3-RA | 407..2239 | 17..1851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:58 Download gff for
BO12224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7873806..7873961 | 1696..1851 | 98 | <- | Minus |
2L | 7874032..7874511 | 1216..1695 | 100 | <- | Minus |
2L | 7875213..7875337 | 1091..1215 | 100 | <- | Minus |
2L | 7876031..7876164 | 957..1090 | 100 | <- | Minus |
2L | 7878207..7879146 | 17..956 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:29 Download gff for
BO12224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7875213..7875337 | 1091..1215 | 100 | <- | Minus |
arm_2L | 7876031..7876164 | 957..1090 | 100 | <- | Minus |
arm_2L | 7873806..7873961 | 1696..1851 | 98 | <- | Minus |
arm_2L | 7874032..7874511 | 1216..1695 | 100 | <- | Minus |
arm_2L | 7878207..7879146 | 17..956 | 100 | | Minus |
BO12224.pep Sequence
Translation from 16 to 1867
> BO12224.pep
MALTNFSLPFGALGQPWGVTIAPLHPIHQLASNTNNLLYSPADHQQQTPA
EAAADPEYFKNNPYAPPQSGGYQYQNTAGRRKQSNAYLPPTAPNAVRNSV
YHIQQVQQTQQQQTQQQHQQQDQHENSVSFQSSSSRSSSSSTTGQSSIQL
TQTHASGRGPAEGSYSRYPGQQAQPPQQQQPQQKQYFNAHGSASATFTKN
SGSFSITSFGSRQQQQQPPQPQQPPPSQQQQPPPAPPPQRSRQAKPEAQP
AQTYGVAPPENYPERAPGFTRVQAGQGSRTQVHAVLDYDVEEGEEDEEED
GEEEGQFYEGQENDKSNNNQMPTVTPIQGPIYLKNGTVPVVPLFSYPKLN
NGSFLQIPIWWTALSVALGLDVRGDVIKGVPCIKRYHQLFCPTAGNSYPI
DKIERFIDDNKALMRRMYGDFEMNMEGPGGGGGRQQGKVRKRRFIDEPDI
FIPPGAFAANAGETVEAGDSYFGQLRKKRQAAAGGSRNRGGSAGGSGNGN
TNANRQPGNKNGSSGTGRLDACESKIEIVTPYWASNSAGKIRAIVNTQHF
EQAIHQEVCSNTQTPRCEGECGCEQKYKWHRLLAYDPDNDCKGIFMDWFL
FPSCCVCRCNPASFLDH
BO12224.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:59:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spz3-PA | 611 | CG7104-PA | 1..611 | 1..611 | 3308 | 100 | Plus |
spz4-PB | 597 | CG14928-PB | 447..538 | 519..609 | 281 | 50 | Plus |
cno-PF | 1721 | CG42312-PF | 937..1290 | 41..328 | 199 | 26.9 | Plus |
cno-PC | 1882 | CG2534-PB | 1098..1451 | 41..328 | 199 | 26.9 | Plus |
cno-PG | 1951 | CG42312-PG | 1167..1520 | 41..328 | 199 | 26.9 | Plus |