Clone BO12224 Report

Search the DGRC for BO12224

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:122
Well:24
Vector:pDNR-Dual
Associated Gene/Transcriptspz3-RA
Protein status:BO12224.pep: Imported from assembly
Sequenced Size:1867

Clone Sequence Records

BO12224.5prime Sequence

841 bp (754 high quality bases) assembled on 2006-04-20

> BO12224.5prime
GAAGTTATCAGTCGACATGGCTCTGACCAATTTCTCGCTGCCCTTCGGTG
CCCTGGGCCAGCCCTGGGGAGTCACCATAGCTCCCCTGCATCCAATCCAC
CAGTTGGCCAGCAACACAAATAATCTGCTCTACTCGCCAGCTGACCACCA
GCAGCAGACTCCCGCGGAGGCAGCCGCCGATCCGGAGTACTTCAAGAACA
ATCCCTATGCGCCGCCGCAATCGGGTGGTTATCAATATCAAAATACAGCT
GGACGACGCAAGCAGAGTAACGCCTATTTGCCACCGACAGCGCCGAATGC
TGTCCGGAATTCCGTTTACCACATCCAGCAGGTACAGCAGACGCAGCAGC
AGCAAACGCAACAACAACACCAGCAGCAGGATCAGCATGAGAACAGCGTG
TCCTTCCAGAGCAGCAGTTCCAGATCAAGTTCGAGCAGCACCACGGGCCA
AAGTTCCATCCAGCTGACACAGACTCATGCGAGTGGCCGGGGACCGGCGG
AGGGTTCGTACTCCCGTTATCCCGGACAGCAAGCACAGCCGCCGCAGCAG
CAGCAACCGCAACAGAAGCAATATTTCAATGCACACGGCAGTGCCAGTGC
CACTTTTACTAAGAACAGCGGCAGCTTTAGTATTACCAGCTTTGGCAGCA
GGCAGCAGCAGCAGCAGCCACCGCAGCCGCAACAACCACCGCCATCGCAA
CAGCAGCAACCACCACCTGCACCACCGCCCCAAAGGTCCAGGCAGGCCAA
GCCGGAGGCTCAACCAGCTCAGACATACGGAGTTGCCCCGCCGGAGAATT
ATCCGGAACGAGCACCAGGATTTACACGGGTTCAGGCTGGT

BO12224.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7104-PA 1836 Spz3-RA 1..825 17..841 4125 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:49:31
Subject Length Description Subject Range Query Range Score Percent Strand
spz3-RA 2552 CG7104-RA 406..1231 16..841 4130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:49:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7878322..7879147 841..16 4130 100 Minus
Blast to na_te.dros performed 2015-02-13 08:49:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6531..6960 333..762 302 57.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2313..2739 335..765 271 57.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2333..2540 526..733 256 62.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2405..2856 318..764 238 55.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2608..3012 318..716 181 53.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6787..6946 526..694 177 61 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2376..2541 527..695 163 58.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6815..6997 527..712 156 58.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6923 358..563 148 57 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2592..2661 656..726 145 69 Plus
roo 9092 roo DM_ROO 9092bp 1118..1175 527..583 125 70.7 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3279..3369 530..617 121 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1537..1601 525..585 117 69.2 Plus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 841..895 532..587 115 69.6 Plus

BO12224.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:48 Download gff for BO12224.5prime
Subject Subject Range Query Range Percent Splice Strand
Spz3-PA 1..825 17..841 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:04 Download gff for BO12224.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7104-PA 1..825 17..841 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:42:30 Download gff for BO12224.5prime
Subject Subject Range Query Range Percent Splice Strand
spz3-RA 406..1231 16..841 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:32:28 Download gff for BO12224.5prime
Subject Subject Range Query Range Percent Splice Strand
spz3-RA 406..1231 16..841 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:32:28 Download gff for BO12224.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7878322..7879147 16..841 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:42:30 Download gff for BO12224.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7878322..7879147 16..841 100   Minus

BO12224.complete Sequence

1867 bp assembled on 2008-08-14

GenBank Submission: FJ632365

> BO12224.complete
GAAGTTATCAGTCGACATGGCTCTGACCAATTTCTCGCTGCCCTTCGGTG
CCCTGGGCCAGCCCTGGGGAGTCACCATAGCTCCCCTGCATCCAATCCAC
CAGTTGGCCAGCAACACAAATAATCTGCTCTACTCGCCAGCTGACCACCA
GCAGCAGACTCCCGCGGAGGCAGCCGCCGATCCGGAGTACTTCAAGAACA
ATCCCTATGCGCCGCCGCAATCGGGTGGTTATCAATATCAAAATACAGCT
GGACGACGCAAGCAGAGTAACGCCTATTTGCCACCGACAGCGCCGAATGC
TGTCCGGAATTCCGTTTACCACATCCAGCAGGTACAGCAGACGCAGCAGC
AGCAAACGCAACAACAACACCAGCAGCAGGATCAGCATGAGAACAGCGTG
TCCTTCCAGAGCAGCAGTTCCAGATCAAGTTCGAGCAGCACCACGGGCCA
AAGTTCCATCCAGCTGACACAGACTCATGCGAGTGGCCGGGGACCGGCGG
AGGGTTCGTACTCCCGTTATCCCGGACAGCAAGCACAGCCGCCGCAGCAG
CAGCAACCGCAACAGAAGCAATATTTCAATGCACACGGCAGTGCCAGTGC
CACTTTTACTAAGAACAGCGGCAGCTTTAGTATTACCAGCTTTGGCAGCA
GGCAGCAGCAGCAGCAGCCACCGCAGCCGCAACAACCACCGCCATCGCAA
CAGCAGCAACCACCACCTGCACCACCGCCCCAAAGGTCCAGGCAGGCCAA
GCCGGAGGCTCAACCAGCTCAGACATACGGAGTTGCCCCGCCGGAGAATT
ATCCGGAACGAGCACCAGGATTTACACGGGTTCAGGCTGGTCAGGGATCC
AGGACTCAGGTACACGCCGTTCTAGACTACGACGTGGAGGAGGGTGAGGA
GGATGAGGAGGAGGACGGAGAGGAGGAAGGACAGTTCTACGAAGGCCAAG
AGAATGATAAGTCGAATAACAATCAGATGCCCACAGTGACGCCCATCCAG
GGACCGATTTACTTGAAGAACGGGACGGTTCCAGTGGTGCCGCTCTTCTC
CTATCCGAAACTCAACAACGGATCGTTCCTACAGATTCCGATCTGGTGGA
CGGCTTTGTCGGTGGCTTTGGGACTGGATGTGCGCGGCGATGTCATCAAG
GGAGTGCCGTGCATCAAGCGATATCATCAACTGTTTTGCCCCACGGCCGG
CAATAGTTATCCCATTGACAAGATTGAACGTTTCATAGACGACAACAAGG
CCCTGATGCGACGGATGTACGGCGACTTTGAGATGAACATGGAGGGTCCT
GGCGGAGGAGGTGGCAGACAACAAGGCAAGGTGCGAAAGCGTCGCTTCAT
AGACGAGCCGGATATATTCATACCCCCGGGAGCATTTGCTGCCAATGCCG
GGGAGACCGTCGAAGCCGGAGATAGTTACTTTGGCCAACTCCGGAAAAAG
CGCCAAGCTGCCGCCGGAGGAAGTCGAAATAGAGGCGGATCTGCCGGAGG
AAGTGGCAATGGGAACACGAATGCCAATAGGCAACCGGGAAATAAGAATG
GTAGTTCGGGCACTGGAAGACTCGATGCCTGCGAGTCGAAGATTGAAATT
GTCACACCGTACTGGGCATCGAACTCCGCGGGTAAGATCAGAGCCATCGT
AAATACTCAGCATTTCGAGCAGGCGATTCACCAGGAGGTTTGCAGCAATA
CCCAAACTCCAAGATGTGAGGGCGAGTGTGGATGCGAGCAGAAATACAAA
TGGCATAGATTACTCGCCTACGATCCTGATAACGATTGCAAGGGCATTTT
TATGGATTGGTTCCTGTTTCCTTCGTGCTGTGTCTGTAGATGTAATCCCG
CAAGCTTTCTAGACCAT

BO12224.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:06:21
Subject Length Description Subject Range Query Range Score Percent Strand
spz3-RA 1836 CG7104-PA 1..1833 17..1849 9165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
spz3-RA 2552 CG7104-RA 406..2239 16..1849 9170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:06:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7878207..7879147 956..16 4705 100 Minus
2L 23513712 2L 7874032..7874511 1695..1216 2400 100 Minus
2L 23513712 2L 7873808..7873968 1849..1689 790 99.4 Minus
2L 23513712 2L 7876031..7876165 1090..956 675 100 Minus
2L 23513712 2L 7875213..7875338 1215..1090 630 100 Minus
Blast to na_te.dros performed 2014-11-27 13:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6531..6960 333..762 302 57.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2313..2739 335..765 271 57.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2333..2540 526..733 256 62.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2405..2856 318..764 238 55.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6787..6946 526..694 177 61 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2376..2541 527..695 163 58.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6815..6997 527..712 156 58.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2592..2661 656..726 145 69 Plus
roo 9092 roo DM_ROO 9092bp 1118..1175 527..583 125 70.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1537..1601 525..585 117 69.2 Plus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 841..895 532..587 115 69.6 Plus

BO12224.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:24 Download gff for BO12224.complete
Subject Subject Range Query Range Percent Splice Strand
Spz3-RA 404..2243 16..1857 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:29 Download gff for BO12224.complete
Subject Subject Range Query Range Percent Splice Strand
spz3-RA 407..2239 17..1851 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:20 Download gff for BO12224.complete
Subject Subject Range Query Range Percent Splice Strand
Spz3-RA 405..2237 17..1851 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:58 Download gff for BO12224.complete
Subject Subject Range Query Range Percent Splice Strand
spz3-RA 407..2239 17..1851 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:58 Download gff for BO12224.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7873806..7873961 1696..1851 98 <- Minus
2L 7874032..7874511 1216..1695 100 <- Minus
2L 7875213..7875337 1091..1215 100 <- Minus
2L 7876031..7876164 957..1090 100 <- Minus
2L 7878207..7879146 17..956 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:29 Download gff for BO12224.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7875213..7875337 1091..1215 100 <- Minus
arm_2L 7876031..7876164 957..1090 100 <- Minus
arm_2L 7873806..7873961 1696..1851 98 <- Minus
arm_2L 7874032..7874511 1216..1695 100 <- Minus
arm_2L 7878207..7879146 17..956 100   Minus

BO12224.pep Sequence

Translation from 16 to 1867

> BO12224.pep
MALTNFSLPFGALGQPWGVTIAPLHPIHQLASNTNNLLYSPADHQQQTPA
EAAADPEYFKNNPYAPPQSGGYQYQNTAGRRKQSNAYLPPTAPNAVRNSV
YHIQQVQQTQQQQTQQQHQQQDQHENSVSFQSSSSRSSSSSTTGQSSIQL
TQTHASGRGPAEGSYSRYPGQQAQPPQQQQPQQKQYFNAHGSASATFTKN
SGSFSITSFGSRQQQQQPPQPQQPPPSQQQQPPPAPPPQRSRQAKPEAQP
AQTYGVAPPENYPERAPGFTRVQAGQGSRTQVHAVLDYDVEEGEEDEEED
GEEEGQFYEGQENDKSNNNQMPTVTPIQGPIYLKNGTVPVVPLFSYPKLN
NGSFLQIPIWWTALSVALGLDVRGDVIKGVPCIKRYHQLFCPTAGNSYPI
DKIERFIDDNKALMRRMYGDFEMNMEGPGGGGGRQQGKVRKRRFIDEPDI
FIPPGAFAANAGETVEAGDSYFGQLRKKRQAAAGGSRNRGGSAGGSGNGN
TNANRQPGNKNGSSGTGRLDACESKIEIVTPYWASNSAGKIRAIVNTQHF
EQAIHQEVCSNTQTPRCEGECGCEQKYKWHRLLAYDPDNDCKGIFMDWFL
FPSCCVCRCNPASFLDH

BO12224.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
spz3-PA 611 CG7104-PA 1..611 1..611 3308 100 Plus
spz4-PB 597 CG14928-PB 447..538 519..609 281 50 Plus
cno-PF 1721 CG42312-PF 937..1290 41..328 199 26.9 Plus
cno-PC 1882 CG2534-PB 1098..1451 41..328 199 26.9 Plus
cno-PG 1951 CG42312-PG 1167..1520 41..328 199 26.9 Plus