Clone BO12225 Report

Search the DGRC for BO12225

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:122
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptSdc-RB
Protein status:BO12225.pep: validated full length
Sequenced Size:712

Clone Sequence Records

BO12225.3prime Sequence

710 bp (709 high quality bases) assembled on 2006-04-20

> BO12225.3prime
ATGGTCTAGAAAGCTTGCGGCGTAGAACTCGCGGTTATTCGCATTTTTCG
CATACGAATTGTTGGCCGGCGATCTCTTTGGCTCGTCCAGCGCATAGGAT
CCCTCGTCCTTTTTCCTCATGCGGTACACGATGAACATGACCACGAGTAT
GGCGCAGAGCAGGCCAACGACGGCACCGCCAATGACAGCAGCCAGAATTC
CGGGCTGCGAGAAGAAGCTCGACGTGCGATCGTCCTCGCTCATGATGACC
ACTTCGTTGCCGTTGGGCCTGTGATCGATGCCCTTTGTGTCGGAGGGCTG
GCTATTCACGTTCGTATTGGGGTCCAATTCGTGCACGTTGCTGCCACCTG
CGCCCGTGTTTATGCCGGAGTTGCTGCTCTGCGAGATGCGCGTGTTGTGC
GAACTGTGCGAATGCTGATCGGGTTCGGCGTCCTCGTCATCGGGTCCAAA
GCCGGAGCCAGAATAGTCCGGATCTTTCTCTAGATCTTCGTGTATACCGC
CGCGTCCGCCGGATCCCTCGATGCTATCATCGTCGATATAGATTTCATCA
TGGGGCCGAGAAGCTGCTGCTGATGGCGCTGCCGCCGATGGTTTCACCGA
TTTCTGATCTTGAGCGTGGGTGGCGGCTACCAGAACTCCGATGAGAATTG
CGACTAGCAATAGCGGCTCTACGGAAATCTTCTGCTTTGGCTTCATGTCG
ACTGATAACT

BO12225.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG10497-PB 681 Sdc-RB 1..678 696..19 3365 99.8 Minus
CG10497-PC 681 Sdc-RC 1..678 696..19 3365 99.8 Minus
CG10497-PA 1200 Sdc-RA 1..341 696..356 1705 100 Minus
CG10497-PA 1200 Sdc-RA 865..1197 351..19 1665 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:48:29
Subject Length Description Subject Range Query Range Score Percent Strand
Sdc-RB 1985 CG10497-RB 359..1036 696..19 3375 99.9 Minus
Sdc-RG 2944 CG10497-RG 195..780 604..19 2915 99.8 Minus
Sdc-RD 1869 CG10497-RD 337..677 696..356 1705 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21394566..21394736 19..189 855 100 Plus
2R 25286936 2R 21394878..21395045 189..356 825 99.4 Plus
2R 25286936 2R 21399175..21399313 357..495 695 100 Plus
2R 25286936 2R 21412311..21412421 496..606 555 100 Plus
2R 25286936 2R 21480091..21480183 604..696 465 100 Plus
Blast to na_te.dros performed 2015-02-10 18:48:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dfun\Isfun-1 928 Dfun\Isfun-1 DFU309320 928bp Derived from AJ309320 (Rel. 68, Last updated, Version 1). 458..506 22..70 110 69.4 Plus

BO12225.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:49 Download gff for BO12225.3prime
Subject Subject Range Query Range Percent Splice Strand
Sdc-PC 1..681 16..696 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:06 Download gff for BO12225.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10497-PC 1..681 16..696 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:48:51 Download gff for BO12225.3prime
Subject Subject Range Query Range Percent Splice Strand
Sdc-RB 359..1036 19..696 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:01:44 Download gff for BO12225.3prime
Subject Subject Range Query Range Percent Splice Strand
Sdc-RB 359..1036 19..696 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:44 Download gff for BO12225.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21394566..21394735 19..188 100 <- Plus
2R 21394878..21395045 189..356 99 <- Plus
2R 21399175..21399313 357..495 100 <- Plus
2R 21412311..21412418 496..603 100 <- Plus
2R 21480091..21480183 604..696 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:48:51 Download gff for BO12225.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17282071..17282240 19..188 100 <- Plus
arm_2R 17282383..17282550 189..356 99 <- Plus
arm_2R 17286680..17286818 357..495 100 <- Plus
arm_2R 17299816..17299923 496..603 100 <- Plus
arm_2R 17367596..17367688 604..696 100   Plus

BO12225.5prime Sequence

710 bp (709 high quality bases) assembled on 2006-04-20

> BO12225.5prime
GAAGTTATCAGTCGACATGAAGCCAAAGCAGAAGATTTCCGTAGAGCCGC
TATTGCTAGTCGCAATTCTCATCGGAGTTCTGGTAGCCGCCACCCACGCT
CAAGATCAGAAATCGGTGAAACCATCGGCGGCAGCGCCATCAGCAGCAGC
TTCTCGGCCCCATGATGAAATCTATATCGACGATGATAGCATCGAGGGAT
CCGGCGGACGCGGCGGTATACACGAAGATCTAGAGAAAGATCCGGACTAT
TCTGGCTCCGGCTTTGGACCCGATGACGAGGACGCCGAACCCGATCAGCA
TTCGCACAGTTCGCACAACACGCGCATCTCGCAGAGCAGCAACTCCGGCA
TAAACACGGGCGCAGGTGGCAGCAACGTGCACGAATTGGACCCCAATACG
AACGTGAATAGCCAGCCCTCCGACACAAAGGGCATCGATCACAGGCCCAA
CGGCAACGAAGTGGTCATCATGAGCGAGGACGATCGCACGTCGAGCTTCT
TCTCGCAGCCCGGAATTCTGGCTGCTGTCATTGGCGGTGCCGTCGTTGGC
CTGCTCTGCGCCATACTCGTGGTCATGTTCATCGTGTACCGCATGAGGAA
AAAGGACGAGGGATCCTATGCGCTGGACGAGCCAAAGAGATCGCCGGCCA
ACAATTCGTATGCGAAAAATGCGAATAACCGCGAGTTCTACGCCGCAAGC
TTTCTAGACC

BO12225.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG10497-PB 681 Sdc-RB 1..678 17..694 3365 99.8 Plus
CG10497-PC 681 Sdc-RC 1..678 17..694 3365 99.8 Plus
CG10497-PA 1200 Sdc-RA 1..341 17..357 1705 100 Plus
CG10497-PA 1200 Sdc-RA 865..1197 362..694 1665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:42:22
Subject Length Description Subject Range Query Range Score Percent Strand
Sdc-RB 1985 CG10497-RB 359..1036 17..694 3375 99.9 Plus
Sdc-RG 2944 CG10497-RG 195..780 109..694 2915 99.8 Plus
Sdc-RD 1869 CG10497-RD 337..677 17..357 1705 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21394566..21394736 694..524 855 100 Minus
2R 25286936 2R 21394878..21395045 524..357 825 99.4 Minus
2R 25286936 2R 21399175..21399313 356..218 695 100 Minus
2R 25286936 2R 21412311..21412421 217..107 555 100 Minus
2R 25286936 2R 21480091..21480183 109..17 465 100 Minus
Blast to na_te.dros performed 2015-02-12 00:42:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dfun\Isfun-1 928 Dfun\Isfun-1 DFU309320 928bp Derived from AJ309320 (Rel. 68, Last updated, Version 1). 458..506 691..643 110 69.4 Minus

BO12225.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:50 Download gff for BO12225.5prime
Subject Subject Range Query Range Percent Splice Strand
Sdc-PC 1..681 17..697 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:07 Download gff for BO12225.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10497-PC 1..681 17..697 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:44:20 Download gff for BO12225.5prime
Subject Subject Range Query Range Percent Splice Strand
Sdc-RB 359..1036 17..694 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:08:53 Download gff for BO12225.5prime
Subject Subject Range Query Range Percent Splice Strand
Sdc-RB 359..1036 17..694 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:08:53 Download gff for BO12225.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21394566..21394735 525..694 100 <- Minus
2R 21394878..21395045 357..524 99 <- Minus
2R 21399175..21399313 218..356 100 <- Minus
2R 21412311..21412418 110..217 100 <- Minus
2R 21480091..21480183 17..109 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:44:20 Download gff for BO12225.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17282071..17282240 525..694 100 <- Minus
arm_2R 17282383..17282550 357..524 99 <- Minus
arm_2R 17286680..17286818 218..356 100 <- Minus
arm_2R 17299816..17299923 110..217 100 <- Minus
arm_2R 17367596..17367688 17..109 100   Minus

BO12225.complete Sequence

712 bp assembled on 2006-10-11

GenBank Submission: FJ632366

> BO12225.complete
GAAGTTATCAGTCGACATGAAGCCAAAGCAGAAGATTTCCGTAGAGCCGC
TATTGCTAGTCGCAATTCTCATCGGAGTTCTGGTAGCCGCCACCCACGCT
CAAGATCAGAAATCGGTGAAACCATCGGCGGCAGCGCCATCAGCAGCAGC
TTCTCGGCCCCATGATGAAATCTATATCGACGATGATAGCATCGAGGGAT
CCGGCGGACGCGGCGGTATACACGAAGATCTAGAGAAAGATCCGGACTAT
TCTGGCTCCGGCTTTGGACCCGATGACGAGGACGCCGAACCCGATCAGCA
TTCGCACAGTTCGCACAACACGCGCATCTCGCAGAGCAGCAACTCCGGCA
TAAACACGGGCGCAGGTGGCAGCAACGTGCACGAATTGGACCCCAATACG
AACGTGAATAGCCAGCCCTCCGACACAAAGGGCATCGATCACAGGCCCAA
CGGCAACGAAGTGGTCATCATGAGCGAGGACGATCGCACGTCGAGCTTCT
TCTCGCAGCCCGGAATTCTGGCTGCTGTCATTGGCGGTGCCGTCGTTGGC
CTGCTCTGCGCCATACTCGTGGTCATGTTCATCGTGTACCGCATGAGGAA
AAAGGACGAGGGATCCTATGCGCTGGACGAGCCAAAGAGATCGCCGGCCA
ACAATTCGTATGCGAAAAATGCGAATAACCGCGAGTTCTACGCCGCAAGC
TTTCTAGACCAT

BO12225.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:04:06
Subject Length Description Subject Range Query Range Score Percent Strand
Sdc-RB 681 CG10497-PB 1..678 17..694 3375 99.9 Plus
Sdc-RD 1197 CG10497-PD 1..341 17..357 1705 100 Plus
Sdc-RA 1200 CG10497-PA 1..341 17..357 1705 100 Plus
Sdc-RD 1197 CG10497-PD 857..1194 357..694 1675 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:04:08
Subject Length Description Subject Range Query Range Score Percent Strand
Sdc-RB 1985 CG10497-RB 359..1036 17..694 3375 99.9 Plus
Sdc-RG 2944 CG10497-RG 195..780 109..694 2915 99.8 Plus
Sdc-RD 1869 CG10497-RD 337..677 17..357 1705 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:04:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21394566..21394736 694..524 855 100 Minus
2R 25286936 2R 21394878..21395045 524..357 825 99.4 Minus
2R 25286936 2R 21399175..21399313 356..218 695 100 Minus
2R 25286936 2R 21412311..21412421 217..107 555 100 Minus
2R 25286936 2R 21480091..21480183 109..17 465 100 Minus
Blast to na_te.dros performed 2014-11-28 08:04:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dfun\Isfun-1 928 Dfun\Isfun-1 DFU309320 928bp Derived from AJ309320 (Rel. 68, Last updated, Version 1). 458..506 691..643 110 69.4 Minus

BO12225.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:01 Download gff for BO12225.complete
Subject Subject Range Query Range Percent Splice Strand
Sdc-RB 1..681 17..697 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:48:05 Download gff for BO12225.complete
Subject Subject Range Query Range Percent Splice Strand
Sdc-RB 351..1028 17..696 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:39 Download gff for BO12225.complete
Subject Subject Range Query Range Percent Splice Strand
Sdc-RB 359..1036 17..696 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:02 Download gff for BO12225.complete
Subject Subject Range Query Range Percent Splice Strand
Sdc-RB 351..1028 17..694 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:10:04 Download gff for BO12225.complete
Subject Subject Range Query Range Percent Splice Strand
Sdc-RB 359..1036 17..696 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:10:04 Download gff for BO12225.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21394878..21395045 357..524 99 <- Minus
2R 21399175..21399313 218..356 100 <- Minus
2R 21412311..21412418 110..217 100 <- Minus
2R 21480091..21480183 17..109 100   Minus
2R 21394563..21394735 525..696 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:39 Download gff for BO12225.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17282068..17282240 525..696 98 <- Minus
arm_2R 17282383..17282550 357..524 99 <- Minus
arm_2R 17286680..17286818 218..356 100 <- Minus
arm_2R 17299816..17299923 110..217 100 <- Minus
arm_2R 17367596..17367688 17..109 100   Minus

BO12225.pep Sequence

Translation from 16 to 712

> BO12225.pep
MKPKQKISVEPLLLVAILIGVLVAATHAQDQKSVKPSAAAPSAAASRPHD
EIYIDDDSIEGSGGRGGIHEDLEKDPDYSGSGFGPDDEDAEPDQHSHSSH
NTRISQSSNSGINTGAGGSNVHELDPNTNVNSQPSDTKGIDHRPNGNEVV
IMSEDDRTSSFFSQPGILAAVIGGAVVGLLCAILVVMFIVYRMRKKDEGS
YALDEPKRSPANNSYAKNANNREFYAASFLDH

BO12225.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
Sdc-PB 226 CG10497-PB 1..226 1..226 1167 100 Plus
Sdc-PK 322 CG10497-PK 1..141 1..147 598 83 Plus
Sdc-PI 494 CG10497-PI 1..141 1..147 598 83 Plus
Sdc-PA 399 CG10497-PA 1..132 1..132 592 87.9 Plus
Sdc-PK 322 CG10497-PK 203..322 109..226 586 95.8 Plus
Sdc-PH 266 CG10497-PH 120..266 57..226 582 72.9 Plus
Sdc-PA 399 CG10497-PA 253..399 57..226 582 72.9 Plus