Clone Sequence Records
BO12225.3prime Sequence
710 bp (709 high quality bases) assembled on 2006-04-20
> BO12225.3prime
ATGGTCTAGAAAGCTTGCGGCGTAGAACTCGCGGTTATTCGCATTTTTCG
CATACGAATTGTTGGCCGGCGATCTCTTTGGCTCGTCCAGCGCATAGGAT
CCCTCGTCCTTTTTCCTCATGCGGTACACGATGAACATGACCACGAGTAT
GGCGCAGAGCAGGCCAACGACGGCACCGCCAATGACAGCAGCCAGAATTC
CGGGCTGCGAGAAGAAGCTCGACGTGCGATCGTCCTCGCTCATGATGACC
ACTTCGTTGCCGTTGGGCCTGTGATCGATGCCCTTTGTGTCGGAGGGCTG
GCTATTCACGTTCGTATTGGGGTCCAATTCGTGCACGTTGCTGCCACCTG
CGCCCGTGTTTATGCCGGAGTTGCTGCTCTGCGAGATGCGCGTGTTGTGC
GAACTGTGCGAATGCTGATCGGGTTCGGCGTCCTCGTCATCGGGTCCAAA
GCCGGAGCCAGAATAGTCCGGATCTTTCTCTAGATCTTCGTGTATACCGC
CGCGTCCGCCGGATCCCTCGATGCTATCATCGTCGATATAGATTTCATCA
TGGGGCCGAGAAGCTGCTGCTGATGGCGCTGCCGCCGATGGTTTCACCGA
TTTCTGATCTTGAGCGTGGGTGGCGGCTACCAGAACTCCGATGAGAATTG
CGACTAGCAATAGCGGCTCTACGGAAATCTTCTGCTTTGGCTTCATGTCG
ACTGATAACT
BO12225.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10497-PB | 681 | Sdc-RB | 1..678 | 696..19 | 3365 | 99.8 | Minus |
CG10497-PC | 681 | Sdc-RC | 1..678 | 696..19 | 3365 | 99.8 | Minus |
CG10497-PA | 1200 | Sdc-RA | 1..341 | 696..356 | 1705 | 100 | Minus |
CG10497-PA | 1200 | Sdc-RA | 865..1197 | 351..19 | 1665 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:48:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sdc-RB | 1985 | CG10497-RB | 359..1036 | 696..19 | 3375 | 99.9 | Minus |
Sdc-RG | 2944 | CG10497-RG | 195..780 | 604..19 | 2915 | 99.8 | Minus |
Sdc-RD | 1869 | CG10497-RD | 337..677 | 696..356 | 1705 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:48:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21394566..21394736 | 19..189 | 855 | 100 | Plus |
2R | 25286936 | 2R | 21394878..21395045 | 189..356 | 825 | 99.4 | Plus |
2R | 25286936 | 2R | 21399175..21399313 | 357..495 | 695 | 100 | Plus |
2R | 25286936 | 2R | 21412311..21412421 | 496..606 | 555 | 100 | Plus |
2R | 25286936 | 2R | 21480091..21480183 | 604..696 | 465 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 18:48:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dfun\Isfun-1 | 928 | Dfun\Isfun-1 DFU309320 928bp Derived from AJ309320 (Rel. 68, Last updated, Version 1). | 458..506 | 22..70 | 110 | 69.4 | Plus |
BO12225.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:49 Download gff for
BO12225.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sdc-PC | 1..681 | 16..696 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:06 Download gff for
BO12225.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10497-PC | 1..681 | 16..696 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:48:51 Download gff for
BO12225.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sdc-RB | 359..1036 | 19..696 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:01:44 Download gff for
BO12225.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sdc-RB | 359..1036 | 19..696 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:44 Download gff for
BO12225.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21394566..21394735 | 19..188 | 100 | <- | Plus |
2R | 21394878..21395045 | 189..356 | 99 | <- | Plus |
2R | 21399175..21399313 | 357..495 | 100 | <- | Plus |
2R | 21412311..21412418 | 496..603 | 100 | <- | Plus |
2R | 21480091..21480183 | 604..696 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:48:51 Download gff for
BO12225.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17282071..17282240 | 19..188 | 100 | <- | Plus |
arm_2R | 17282383..17282550 | 189..356 | 99 | <- | Plus |
arm_2R | 17286680..17286818 | 357..495 | 100 | <- | Plus |
arm_2R | 17299816..17299923 | 496..603 | 100 | <- | Plus |
arm_2R | 17367596..17367688 | 604..696 | 100 | | Plus |
BO12225.5prime Sequence
710 bp (709 high quality bases) assembled on 2006-04-20
> BO12225.5prime
GAAGTTATCAGTCGACATGAAGCCAAAGCAGAAGATTTCCGTAGAGCCGC
TATTGCTAGTCGCAATTCTCATCGGAGTTCTGGTAGCCGCCACCCACGCT
CAAGATCAGAAATCGGTGAAACCATCGGCGGCAGCGCCATCAGCAGCAGC
TTCTCGGCCCCATGATGAAATCTATATCGACGATGATAGCATCGAGGGAT
CCGGCGGACGCGGCGGTATACACGAAGATCTAGAGAAAGATCCGGACTAT
TCTGGCTCCGGCTTTGGACCCGATGACGAGGACGCCGAACCCGATCAGCA
TTCGCACAGTTCGCACAACACGCGCATCTCGCAGAGCAGCAACTCCGGCA
TAAACACGGGCGCAGGTGGCAGCAACGTGCACGAATTGGACCCCAATACG
AACGTGAATAGCCAGCCCTCCGACACAAAGGGCATCGATCACAGGCCCAA
CGGCAACGAAGTGGTCATCATGAGCGAGGACGATCGCACGTCGAGCTTCT
TCTCGCAGCCCGGAATTCTGGCTGCTGTCATTGGCGGTGCCGTCGTTGGC
CTGCTCTGCGCCATACTCGTGGTCATGTTCATCGTGTACCGCATGAGGAA
AAAGGACGAGGGATCCTATGCGCTGGACGAGCCAAAGAGATCGCCGGCCA
ACAATTCGTATGCGAAAAATGCGAATAACCGCGAGTTCTACGCCGCAAGC
TTTCTAGACC
BO12225.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10497-PB | 681 | Sdc-RB | 1..678 | 17..694 | 3365 | 99.8 | Plus |
CG10497-PC | 681 | Sdc-RC | 1..678 | 17..694 | 3365 | 99.8 | Plus |
CG10497-PA | 1200 | Sdc-RA | 1..341 | 17..357 | 1705 | 100 | Plus |
CG10497-PA | 1200 | Sdc-RA | 865..1197 | 362..694 | 1665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:42:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sdc-RB | 1985 | CG10497-RB | 359..1036 | 17..694 | 3375 | 99.9 | Plus |
Sdc-RG | 2944 | CG10497-RG | 195..780 | 109..694 | 2915 | 99.8 | Plus |
Sdc-RD | 1869 | CG10497-RD | 337..677 | 17..357 | 1705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:42:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21394566..21394736 | 694..524 | 855 | 100 | Minus |
2R | 25286936 | 2R | 21394878..21395045 | 524..357 | 825 | 99.4 | Minus |
2R | 25286936 | 2R | 21399175..21399313 | 356..218 | 695 | 100 | Minus |
2R | 25286936 | 2R | 21412311..21412421 | 217..107 | 555 | 100 | Minus |
2R | 25286936 | 2R | 21480091..21480183 | 109..17 | 465 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 00:42:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dfun\Isfun-1 | 928 | Dfun\Isfun-1 DFU309320 928bp Derived from AJ309320 (Rel. 68, Last updated, Version 1). | 458..506 | 691..643 | 110 | 69.4 | Minus |
BO12225.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:50 Download gff for
BO12225.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sdc-PC | 1..681 | 17..697 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:07 Download gff for
BO12225.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10497-PC | 1..681 | 17..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:44:20 Download gff for
BO12225.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sdc-RB | 359..1036 | 17..694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:08:53 Download gff for
BO12225.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sdc-RB | 359..1036 | 17..694 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:08:53 Download gff for
BO12225.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21394566..21394735 | 525..694 | 100 | <- | Minus |
2R | 21394878..21395045 | 357..524 | 99 | <- | Minus |
2R | 21399175..21399313 | 218..356 | 100 | <- | Minus |
2R | 21412311..21412418 | 110..217 | 100 | <- | Minus |
2R | 21480091..21480183 | 17..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:44:20 Download gff for
BO12225.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17282071..17282240 | 525..694 | 100 | <- | Minus |
arm_2R | 17282383..17282550 | 357..524 | 99 | <- | Minus |
arm_2R | 17286680..17286818 | 218..356 | 100 | <- | Minus |
arm_2R | 17299816..17299923 | 110..217 | 100 | <- | Minus |
arm_2R | 17367596..17367688 | 17..109 | 100 | | Minus |
BO12225.complete Sequence
712 bp assembled on 2006-10-11
GenBank Submission: FJ632366
> BO12225.complete
GAAGTTATCAGTCGACATGAAGCCAAAGCAGAAGATTTCCGTAGAGCCGC
TATTGCTAGTCGCAATTCTCATCGGAGTTCTGGTAGCCGCCACCCACGCT
CAAGATCAGAAATCGGTGAAACCATCGGCGGCAGCGCCATCAGCAGCAGC
TTCTCGGCCCCATGATGAAATCTATATCGACGATGATAGCATCGAGGGAT
CCGGCGGACGCGGCGGTATACACGAAGATCTAGAGAAAGATCCGGACTAT
TCTGGCTCCGGCTTTGGACCCGATGACGAGGACGCCGAACCCGATCAGCA
TTCGCACAGTTCGCACAACACGCGCATCTCGCAGAGCAGCAACTCCGGCA
TAAACACGGGCGCAGGTGGCAGCAACGTGCACGAATTGGACCCCAATACG
AACGTGAATAGCCAGCCCTCCGACACAAAGGGCATCGATCACAGGCCCAA
CGGCAACGAAGTGGTCATCATGAGCGAGGACGATCGCACGTCGAGCTTCT
TCTCGCAGCCCGGAATTCTGGCTGCTGTCATTGGCGGTGCCGTCGTTGGC
CTGCTCTGCGCCATACTCGTGGTCATGTTCATCGTGTACCGCATGAGGAA
AAAGGACGAGGGATCCTATGCGCTGGACGAGCCAAAGAGATCGCCGGCCA
ACAATTCGTATGCGAAAAATGCGAATAACCGCGAGTTCTACGCCGCAAGC
TTTCTAGACCAT
BO12225.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:04:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sdc-RB | 681 | CG10497-PB | 1..678 | 17..694 | 3375 | 99.9 | Plus |
Sdc-RD | 1197 | CG10497-PD | 1..341 | 17..357 | 1705 | 100 | Plus |
Sdc-RA | 1200 | CG10497-PA | 1..341 | 17..357 | 1705 | 100 | Plus |
Sdc-RD | 1197 | CG10497-PD | 857..1194 | 357..694 | 1675 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:04:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sdc-RB | 1985 | CG10497-RB | 359..1036 | 17..694 | 3375 | 99.9 | Plus |
Sdc-RG | 2944 | CG10497-RG | 195..780 | 109..694 | 2915 | 99.8 | Plus |
Sdc-RD | 1869 | CG10497-RD | 337..677 | 17..357 | 1705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:04:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21394566..21394736 | 694..524 | 855 | 100 | Minus |
2R | 25286936 | 2R | 21394878..21395045 | 524..357 | 825 | 99.4 | Minus |
2R | 25286936 | 2R | 21399175..21399313 | 356..218 | 695 | 100 | Minus |
2R | 25286936 | 2R | 21412311..21412421 | 217..107 | 555 | 100 | Minus |
2R | 25286936 | 2R | 21480091..21480183 | 109..17 | 465 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 08:04:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dfun\Isfun-1 | 928 | Dfun\Isfun-1 DFU309320 928bp Derived from AJ309320 (Rel. 68, Last updated, Version 1). | 458..506 | 691..643 | 110 | 69.4 | Minus |
BO12225.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:01 Download gff for
BO12225.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sdc-RB | 1..681 | 17..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:48:05 Download gff for
BO12225.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sdc-RB | 351..1028 | 17..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:39 Download gff for
BO12225.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sdc-RB | 359..1036 | 17..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:02 Download gff for
BO12225.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sdc-RB | 351..1028 | 17..694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:10:04 Download gff for
BO12225.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sdc-RB | 359..1036 | 17..696 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:10:04 Download gff for
BO12225.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21394878..21395045 | 357..524 | 99 | <- | Minus |
2R | 21399175..21399313 | 218..356 | 100 | <- | Minus |
2R | 21412311..21412418 | 110..217 | 100 | <- | Minus |
2R | 21480091..21480183 | 17..109 | 100 | | Minus |
2R | 21394563..21394735 | 525..696 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:39 Download gff for
BO12225.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17282068..17282240 | 525..696 | 98 | <- | Minus |
arm_2R | 17282383..17282550 | 357..524 | 99 | <- | Minus |
arm_2R | 17286680..17286818 | 218..356 | 100 | <- | Minus |
arm_2R | 17299816..17299923 | 110..217 | 100 | <- | Minus |
arm_2R | 17367596..17367688 | 17..109 | 100 | | Minus |
BO12225.pep Sequence
Translation from 16 to 712
> BO12225.pep
MKPKQKISVEPLLLVAILIGVLVAATHAQDQKSVKPSAAAPSAAASRPHD
EIYIDDDSIEGSGGRGGIHEDLEKDPDYSGSGFGPDDEDAEPDQHSHSSH
NTRISQSSNSGINTGAGGSNVHELDPNTNVNSQPSDTKGIDHRPNGNEVV
IMSEDDRTSSFFSQPGILAAVIGGAVVGLLCAILVVMFIVYRMRKKDEGS
YALDEPKRSPANNSYAKNANNREFYAASFLDH
BO12225.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sdc-PB | 226 | CG10497-PB | 1..226 | 1..226 | 1167 | 100 | Plus |
Sdc-PK | 322 | CG10497-PK | 1..141 | 1..147 | 598 | 83 | Plus |
Sdc-PI | 494 | CG10497-PI | 1..141 | 1..147 | 598 | 83 | Plus |
Sdc-PA | 399 | CG10497-PA | 1..132 | 1..132 | 592 | 87.9 | Plus |
Sdc-PK | 322 | CG10497-PK | 203..322 | 109..226 | 586 | 95.8 | Plus |
Sdc-PH | 266 | CG10497-PH | 120..266 | 57..226 | 582 | 72.9 | Plus |
Sdc-PA | 399 | CG10497-PA | 253..399 | 57..226 | 582 | 72.9 | Plus |