Clone Sequence Records
BO12227.3prime Sequence
617 bp (616 high quality bases) assembled on 2006-04-20
> BO12227.3prime
ATGGTCTAGAAAGCTTGCCTCGCATTCAGCACGCAGTTTGGCGATCTCCA
GCTGTGTCTTTTTCGCCTCCAACAAGGTGACGGTGCGTTTCAGTTCGGAT
ATCTCGTTCATCTTGGTAAAGTACTCGGATTTGACCACCAGATACTCCGT
TTCCGCCTTGATCAGATCCTTCTGCAGTCGATTGGCGTCGGATGACGGGA
TCACCAGTTGATCCAGATCGGTCAAGTAGCTCACCAAGTTGGATTCCTGA
TTGCGTGCACTGCTATCATCCTCGTCGATCAGTTTGTCCAGTAGAATATT
CGAAGTGAAGTCAATTGTGGAGCCGGAAGAGCTCTGTTCTGCCGGAGCGG
CGTCCGTAGCCTCCACCTTAATACCGAATTCAGCGGTTAGATCCTCCCGG
AACTTGAGACATGACTTCCTATGGATAATCAGCCTGTCTATGCTGGTGTT
TGATTGGCATTTCCGACAGTGGGTGCACAGCGCTCGGTACTTCTTCGGCT
CCCCATCCTTGCCGCCCTTGAACGCGGGTAGAAAGCCCAGTTTCTTCCAA
GTTTCATCCTTCGAAAGGCCCGAGGGTCGCTTGGCCTTTTTTGCTTGCGA
CATGTCGACTGATAACT
BO12227.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9740-PA | 588 | CG9740-RA | 1..585 | 603..19 | 2925 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:17:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ibf2-RA | 708 | CG9740-RA | 62..646 | 603..19 | 2925 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:17:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9257789..9258190 | 19..420 | 2010 | 100 | Plus |
| 3R | 32079331 | 3R | 9258255..9258440 | 418..603 | 930 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:17:49 has no hits.
BO12227.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:53 Download gff for
BO12227.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9740-PA | 1..588 | 18..603 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:11 Download gff for
BO12227.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9740-PA | 1..588 | 18..603 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:53:51 Download gff for
BO12227.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9740-RA | 56..659 | 10..609 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 21:00:54 Download gff for
BO12227.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ibf2-RA | 56..659 | 10..609 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 21:00:54 Download gff for
BO12227.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9257776..9258188 | 10..418 | 99 | <- | Plus |
| 3R | 9258256..9258446 | 419..609 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:53:51 Download gff for
BO12227.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5083498..5083910 | 10..418 | 99 | <- | Plus |
| arm_3R | 5083978..5084168 | 419..609 | 98 | | Plus |
BO12227.5prime Sequence
617 bp (616 high quality bases) assembled on 2006-04-20
> BO12227.5prime
GAAGTTATCAGTCGACATGTCGCAAGCAAAAAAGGCCAAGCGACCCTCGG
GCCTTTCGAAGGATGAAACTTGGAAGAAACTGGGCTTTCTACCCGCGTTC
AAGGGCGGCAAGGATGGGGAGCCGAAGAAGTACCGAGCGCTGTGCACCCA
CTGTCGGAAATGCCAATCAAACACCAGCATAGACAGGCTGATTATCCATA
GGAAGTCATGTCTCAAGTTCCGGGAGGATCTAACCGCTGAATTCGGTATT
AAGGTGGAGGCTACGGACGCCGCTCCGGCAGAACAGAGCTCTTCCGGCTC
CACAATTGACTTCACTTCGAATATTCTACTGGACAAACTGATCGACGAGG
ATGATAGCAGTGCACGCAATCAGGAATCCAACTTGGTGAGCTACTTGACC
GATCTGGATCAACTGGTGATCCCGTCATCCGACGCCAATCGACTGCAGAA
GGATCTGATCAAGGCGGAAACGGAGTATCTGGTGGTCAAATCCGAGTACT
TTACCAAGATGAACGAGATATCCGAACTGAAACGCACCGTCACCTTGTTG
GAGGCGAAAAAGACACAGCTGGAGATCGCCAAACTGCGTGCTGAATGCGA
GGCAAGCTTTCTAGACC
BO12227.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9740-PA | 588 | CG9740-RA | 1..585 | 17..601 | 2925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:05:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ibf2-RA | 708 | CG9740-RA | 62..646 | 17..601 | 2925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:05:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9257789..9258190 | 601..200 | 2010 | 100 | Minus |
| 3R | 32079331 | 3R | 9258255..9258440 | 202..17 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:05:36 has no hits.
BO12227.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:54 Download gff for
BO12227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9740-PA | 1..588 | 17..602 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:13 Download gff for
BO12227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9740-PA | 1..588 | 17..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:10:01 Download gff for
BO12227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9740-RA | 56..659 | 11..610 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:08:54 Download gff for
BO12227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ibf2-RA | 56..659 | 11..610 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:08:54 Download gff for
BO12227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9257776..9258188 | 202..610 | 99 | <- | Minus |
| 3R | 9258256..9258446 | 11..201 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:10:01 Download gff for
BO12227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5083498..5083910 | 202..610 | 99 | <- | Minus |
| arm_3R | 5083978..5084168 | 11..201 | 98 | | Minus |
BO12227.complete Sequence
619 bp assembled on 2006-10-11
GenBank Submission: FJ632367
> BO12227.complete
GAAGTTATCAGTCGACATGTCGCAAGCAAAAAAGGCCAAGCGACCCTCGG
GCCTTTCGAAGGATGAAACTTGGAAGAAACTGGGCTTTCTACCCGCGTTC
AAGGGCGGCAAGGATGGGGAGCCGAAGAAGTACCGAGCGCTGTGCACCCA
CTGTCGGAAATGCCAATCAAACACCAGCATAGACAGGCTGATTATCCATA
GGAAGTCATGTCTCAAGTTCCGGGAGGATCTAACCGCTGAATTCGGTATT
AAGGTGGAGGCTACGGACGCCGCTCCGGCAGAACAGAGCTCTTCCGGCTC
CACAATTGACTTCACTTCGAATATTCTACTGGACAAACTGATCGACGAGG
ATGATAGCAGTGCACGCAATCAGGAATCCAACTTGGTGAGCTACTTGACC
GATCTGGATCAACTGGTGATCCCGTCATCCGACGCCAATCGACTGCAGAA
GGATCTGATCAAGGCGGAAACGGAGTATCTGGTGGTCAAATCCGAGTACT
TTACCAAGATGAACGAGATATCCGAACTGAAACGCACCGTCACCTTGTTG
GAGGCGAAAAAGACACAGCTGGAGATCGCCAAACTGCGTGCTGAATGCGA
GGCAAGCTTTCTAGACCAT
BO12227.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:21:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ibf2-RA | 588 | CG9740-PA | 1..585 | 17..601 | 2925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:21:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ibf2-RA | 708 | CG9740-RA | 62..646 | 17..601 | 2925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:21:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9257789..9258190 | 601..200 | 2010 | 100 | Minus |
| 3R | 32079331 | 3R | 9258255..9258440 | 202..17 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:21:34 has no hits.
BO12227.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:03 Download gff for
BO12227.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9740-RA | 1..588 | 17..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:38 Download gff for
BO12227.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9740-RA | 15..618 | 11..610 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:55:20 Download gff for
BO12227.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9740-RA | 62..646 | 17..603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:03 Download gff for
BO12227.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9740-RA | 15..618 | 11..610 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:58:39 Download gff for
BO12227.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ibf2-RA | 62..646 | 17..603 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:58:39 Download gff for
BO12227.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9257785..9258188 | 202..603 | 99 | <- | Minus |
| 3R | 9258256..9258440 | 17..201 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:55:20 Download gff for
BO12227.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5083507..5083910 | 202..603 | 99 | <- | Minus |
| arm_3R | 5083978..5084162 | 17..201 | 100 | | Minus |
BO12227.pep Sequence
Translation from 16 to 619
> BO12227.pep
MSQAKKAKRPSGLSKDETWKKLGFLPAFKGGKDGEPKKYRALCTHCRKCQ
SNTSIDRLIIHRKSCLKFREDLTAEFGIKVEATDAAPAEQSSSGSTIDFT
SNILLDKLIDEDDSSARNQESNLVSYLTDLDQLVIPSSDANRLQKDLIKA
ETEYLVVKSEYFTKMNEISELKRTVTLLEAKKTQLEIAKLRAECEASFLD
H
BO12227.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ibf2-PA | 195 | CG9740-PA | 1..195 | 1..195 | 985 | 100 | Plus |
