Clone BO12230 Report

Search the DGRC for BO12230

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:122
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptCG42343-RD
Protein status:BO12230.pep: validated full length
Sequenced Size:604

Clone Sequence Records

BO12230.3prime Sequence

602 bp (601 high quality bases) assembled on 2006-04-20

> BO12230.3prime
ATGGTCTAGAAAGCTTGCTATGCATATTGTGCACTTGAAATGACAAATCA
AACAGAACGAAAGAGATCGGGGACAAAACGAAAGGAGTTGAAACGAAACG
AAACGAACCGGAACTAATCGAAACGGAACGGAAGTTGAGAATTCAACGCT
GCGCTTGAAACCGATACATACCTTGGCTGGGGCTGACGAACCGTCACCAC
TCACCCGATGACCACCGAGGTTGTTCACCACGCACGTGAAGGTCGCGTCC
CGACCTTGGGCGATGGTCACGTTCTCCAGCGGAATCACAAAGTCCGGCTC
GAAGGCGCCCACTGAGGAGATTTTGTTCGAAACGGTAAGATCAATGCAGT
TACCGAGCAAGAGCAGTAGCAATAGCTGCCACCGAATAGCTGGACCACAC
CCACTTCCGGTACCAGTTCCCGTTCCTAATCCCACCAATCCCGAACCTGA
TGCAATCTCGAGCTGCGCCAGCTTGCGATGTTTGGCTACTTGGGACAATT
TTGGTGAAAATTTGGTAGTATGCTCCTGGCTACAGCTGATGTCGGCGATC
CGCTCGCCGCTCTCCTTCACCACCAGCAAGTTCATCATGTCGACTGATAA
CT

BO12230.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG12565-PA 573 CG12565-RA 1..570 588..19 2850 100 Minus
CG12565-PB 573 CG12565-RB 1..570 588..19 2850 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:17:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG42343-RE 1472 CG42343-RE 246..815 588..19 2850 100 Minus
CG42343-RD 1557 CG42343-RD 331..900 588..19 2850 100 Minus
CG42343-RF 4386 CG42343-RF 246..664 588..170 2095 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:17:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21441432..21441755 19..342 1620 100 Plus
X 23542271 X 21442422..21442668 342..588 1235 100 Plus
Blast to na_te.dros performed 2015-02-12 01:17:25
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1098..1137 356..397 106 76.2 Plus

BO12230.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:59 Download gff for BO12230.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12565-PB 1..573 15..588 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:17 Download gff for BO12230.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12565-PB 1..573 15..588 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:25:02 Download gff for BO12230.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42343-RD 324..905 12..596 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:25:32 Download gff for BO12230.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42343-RD 324..905 12..596 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:25:32 Download gff for BO12230.3prime
Subject Subject Range Query Range Percent Splice Strand
X 21441427..21441754 12..341 99 <- Plus
X 21442422..21442675 342..596 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:25:02 Download gff for BO12230.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21312454..21312781 12..341 99 <- Plus
arm_X 21313449..21313702 342..596 98   Plus

BO12230.5prime Sequence

602 bp (601 high quality bases) assembled on 2006-04-20

> BO12230.5prime
GAAGTTATCAGTCGACATGATGAACTTGCTGGTGGTGAAGGAGAGCGGCG
AGCGGATCGCCGACATCAGCTGTAGCCAGGAGCATACTACCAAATTTTCA
CCAAAATTGTCCCAAGTAGCCAAACATCGCAAGCTGGCGCAGCTCGAGAT
TGCATCAGGTTCGGGATTGGTGGGATTAGGAACGGGAACTGGTACCGGAA
GTGGGTGTGGTCCAGCTATTCGGTGGCAGCTATTGCTACTGCTCTTGCTC
GGTAACTGCATTGATCTTACCGTTTCGAACAAAATCTCCTCAGTGGGCGC
CTTCGAGCCGGACTTTGTGATTCCGCTGGAGAACGTGACCATCGCCCAAG
GTCGGGACGCGACCTTCACGTGCGTGGTGAACAACCTCGGTGGTCATCGG
GTGAGTGGTGACGGTTCGTCAGCCCCAGCCAAGGTATGTATCGGTTTCAA
GCGCAGCGTTGAATTCTCAACTTCCGTTCCGTTTCGATTAGTTCCGGTTC
GTTTCGTTTCGTTTCAACTCCTTTCGTTTTGTCCCCGATCTCTTTCGTTC
TGTTTGATTTGTCATTTCAAGTGCACAATATGCATAGCAAGCTTTCTAGA
CC

BO12230.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG12565-PA 573 CG12565-RA 1..570 17..586 2850 100 Plus
CG12565-PB 573 CG12565-RB 1..570 17..586 2850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG42343-RE 1472 CG42343-RE 246..815 17..586 2850 100 Plus
CG42343-RD 1557 CG42343-RD 331..900 17..586 2850 100 Plus
CG42343-RF 4386 CG42343-RF 246..664 17..435 2095 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21441432..21441755 586..263 1620 100 Minus
X 23542271 X 21442422..21442668 263..17 1235 100 Minus
Blast to na_te.dros performed 2015-02-11 10:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1098..1137 249..208 106 76.2 Minus

BO12230.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:00 Download gff for BO12230.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12565-PB 1..573 17..590 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:18 Download gff for BO12230.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12565-PB 1..573 17..590 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:05:16 Download gff for BO12230.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42343-RD 324..905 9..593 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:06 Download gff for BO12230.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42343-RD 324..905 9..593 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:06 Download gff for BO12230.5prime
Subject Subject Range Query Range Percent Splice Strand
X 21441427..21441754 264..593 99 <- Minus
X 21442422..21442675 9..263 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:05:16 Download gff for BO12230.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21312454..21312781 264..593 99 <- Minus
arm_X 21313449..21313702 9..263 98   Minus

BO12230.complete Sequence

604 bp assembled on 2006-10-11

GenBank Submission: FJ632368

> BO12230.complete
GAAGTTATCAGTCGACATGATGAACTTGCTGGTGGTGAAGGAGAGCGGCG
AGCGGATCGCCGACATCAGCTGTAGCCAGGAGCATACTACCAAATTTTCA
CCAAAATTGTCCCAAGTAGCCAAACATCGCAAGCTGGCGCAGCTCGAGAT
TGCATCAGGTTCGGGATTGGTGGGATTAGGAACGGGAACTGGTACCGGAA
GTGGGTGTGGTCCAGCTATTCGGTGGCAGCTATTGCTACTGCTCTTGCTC
GGTAACTGCATTGATCTTACCGTTTCGAACAAAATCTCCTCAGTGGGCGC
CTTCGAGCCGGACTTTGTGATTCCGCTGGAGAACGTGACCATCGCCCAAG
GTCGGGACGCGACCTTCACGTGCGTGGTGAACAACCTCGGTGGTCATCGG
GTGAGTGGTGACGGTTCGTCAGCCCCAGCCAAGGTATGTATCGGTTTCAA
GCGCAGCGTTGAATTCTCAACTTCCGTTCCGTTTCGATTAGTTCCGGTTC
GTTTCGTTTCGTTTCAACTCCTTTCGTTTTGTCCCCGATCTCTTTCGTTC
TGTTTGATTTGTCATTTCAAGTGCACAATATGCATAGCAAGCTTTCTAGA
CCAT

BO12230.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG42343-RE 573 CG42343-PE 1..570 17..586 2850 100 Plus
CG42343-RD 573 CG42343-PD 1..570 17..586 2850 100 Plus
CG42343-RF 1668 CG42343-PF 1..419 17..435 2095 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG42343-RE 1472 CG42343-RE 246..815 17..586 2850 100 Plus
CG42343-RD 1557 CG42343-RD 331..900 17..586 2850 100 Plus
CG42343-RF 4386 CG42343-RF 246..664 17..435 2095 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21441432..21441755 586..263 1620 100 Minus
X 23542271 X 21442422..21442668 263..17 1235 100 Minus
Blast to na_te.dros performed 2014-11-28 00:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1098..1137 249..208 106 76.2 Minus

BO12230.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:45 Download gff for BO12230.complete
Subject Subject Range Query Range Percent Splice Strand
CG42343-RE 1..573 17..590 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:16 Download gff for BO12230.complete
Subject Subject Range Query Range Percent Splice Strand
CG42343-RE 235..816 9..593 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:18 Download gff for BO12230.complete
Subject Subject Range Query Range Percent Splice Strand
CG42343-RD 331..900 17..588 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:45 Download gff for BO12230.complete
Subject Subject Range Query Range Percent Splice Strand
CG42343-RE 235..816 9..593 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:52 Download gff for BO12230.complete
Subject Subject Range Query Range Percent Splice Strand
CG42343-RD 331..900 17..588 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:52 Download gff for BO12230.complete
Subject Subject Range Query Range Percent Splice Strand
X 21441430..21441754 264..588 99 <- Minus
X 21442422..21442668 17..263 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:18 Download gff for BO12230.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21312457..21312781 264..588 99 <- Minus
arm_X 21313449..21313695 17..263 100   Minus

BO12230.pep Sequence

Translation from 16 to 604

> BO12230.pep
MMNLLVVKESGERIADISCSQEHTTKFSPKLSQVAKHRKLAQLEIASGSG
LVGLGTGTGTGSGCGPAIRWQLLLLLLLGNCIDLTVSNKISSVGAFEPDF
VIPLENVTIAQGRDATFTCVVNNLGGHRVSGDGSSAPAKVCIGFKRSVEF
STSVPFRLVPVRFVSFQLLSFCPRSLSFCLICHFKCTICIASFLDH

BO12230.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG42343-PE 190 CG12565-PB 1..190 1..190 983 100 Plus
CG42343-PD 190 CG12565-PA 1..190 1..190 983 100 Plus
CG42343-PF 555 CG42343-PF 1..140 1..140 712 100 Plus
CG42343-PC 555 CG42343-PC 1..140 1..140 712 100 Plus
CG42343-PG 534 CG42343-PG 1..132 1..142 595 85.9 Plus