Clone Sequence Records
BO12230.3prime Sequence
602 bp (601 high quality bases) assembled on 2006-04-20
> BO12230.3prime
ATGGTCTAGAAAGCTTGCTATGCATATTGTGCACTTGAAATGACAAATCA
AACAGAACGAAAGAGATCGGGGACAAAACGAAAGGAGTTGAAACGAAACG
AAACGAACCGGAACTAATCGAAACGGAACGGAAGTTGAGAATTCAACGCT
GCGCTTGAAACCGATACATACCTTGGCTGGGGCTGACGAACCGTCACCAC
TCACCCGATGACCACCGAGGTTGTTCACCACGCACGTGAAGGTCGCGTCC
CGACCTTGGGCGATGGTCACGTTCTCCAGCGGAATCACAAAGTCCGGCTC
GAAGGCGCCCACTGAGGAGATTTTGTTCGAAACGGTAAGATCAATGCAGT
TACCGAGCAAGAGCAGTAGCAATAGCTGCCACCGAATAGCTGGACCACAC
CCACTTCCGGTACCAGTTCCCGTTCCTAATCCCACCAATCCCGAACCTGA
TGCAATCTCGAGCTGCGCCAGCTTGCGATGTTTGGCTACTTGGGACAATT
TTGGTGAAAATTTGGTAGTATGCTCCTGGCTACAGCTGATGTCGGCGATC
CGCTCGCCGCTCTCCTTCACCACCAGCAAGTTCATCATGTCGACTGATAA
CT
BO12230.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12565-PA | 573 | CG12565-RA | 1..570 | 588..19 | 2850 | 100 | Minus |
CG12565-PB | 573 | CG12565-RB | 1..570 | 588..19 | 2850 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:17:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42343-RE | 1472 | CG42343-RE | 246..815 | 588..19 | 2850 | 100 | Minus |
CG42343-RD | 1557 | CG42343-RD | 331..900 | 588..19 | 2850 | 100 | Minus |
CG42343-RF | 4386 | CG42343-RF | 246..664 | 588..170 | 2095 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:17:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21441432..21441755 | 19..342 | 1620 | 100 | Plus |
X | 23542271 | X | 21442422..21442668 | 342..588 | 1235 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 01:17:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1098..1137 | 356..397 | 106 | 76.2 | Plus |
BO12230.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:59 Download gff for
BO12230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12565-PB | 1..573 | 15..588 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:17 Download gff for
BO12230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12565-PB | 1..573 | 15..588 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:25:02 Download gff for
BO12230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42343-RD | 324..905 | 12..596 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:25:32 Download gff for
BO12230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42343-RD | 324..905 | 12..596 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:25:32 Download gff for
BO12230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21441427..21441754 | 12..341 | 99 | <- | Plus |
X | 21442422..21442675 | 342..596 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:25:02 Download gff for
BO12230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21312454..21312781 | 12..341 | 99 | <- | Plus |
arm_X | 21313449..21313702 | 342..596 | 98 | | Plus |
BO12230.5prime Sequence
602 bp (601 high quality bases) assembled on 2006-04-20
> BO12230.5prime
GAAGTTATCAGTCGACATGATGAACTTGCTGGTGGTGAAGGAGAGCGGCG
AGCGGATCGCCGACATCAGCTGTAGCCAGGAGCATACTACCAAATTTTCA
CCAAAATTGTCCCAAGTAGCCAAACATCGCAAGCTGGCGCAGCTCGAGAT
TGCATCAGGTTCGGGATTGGTGGGATTAGGAACGGGAACTGGTACCGGAA
GTGGGTGTGGTCCAGCTATTCGGTGGCAGCTATTGCTACTGCTCTTGCTC
GGTAACTGCATTGATCTTACCGTTTCGAACAAAATCTCCTCAGTGGGCGC
CTTCGAGCCGGACTTTGTGATTCCGCTGGAGAACGTGACCATCGCCCAAG
GTCGGGACGCGACCTTCACGTGCGTGGTGAACAACCTCGGTGGTCATCGG
GTGAGTGGTGACGGTTCGTCAGCCCCAGCCAAGGTATGTATCGGTTTCAA
GCGCAGCGTTGAATTCTCAACTTCCGTTCCGTTTCGATTAGTTCCGGTTC
GTTTCGTTTCGTTTCAACTCCTTTCGTTTTGTCCCCGATCTCTTTCGTTC
TGTTTGATTTGTCATTTCAAGTGCACAATATGCATAGCAAGCTTTCTAGA
CC
BO12230.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12565-PA | 573 | CG12565-RA | 1..570 | 17..586 | 2850 | 100 | Plus |
CG12565-PB | 573 | CG12565-RB | 1..570 | 17..586 | 2850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:55:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42343-RE | 1472 | CG42343-RE | 246..815 | 17..586 | 2850 | 100 | Plus |
CG42343-RD | 1557 | CG42343-RD | 331..900 | 17..586 | 2850 | 100 | Plus |
CG42343-RF | 4386 | CG42343-RF | 246..664 | 17..435 | 2095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:55:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21441432..21441755 | 586..263 | 1620 | 100 | Minus |
X | 23542271 | X | 21442422..21442668 | 263..17 | 1235 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 10:55:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1098..1137 | 249..208 | 106 | 76.2 | Minus |
BO12230.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:00 Download gff for
BO12230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12565-PB | 1..573 | 17..590 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:18 Download gff for
BO12230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12565-PB | 1..573 | 17..590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:05:16 Download gff for
BO12230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42343-RD | 324..905 | 9..593 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:06 Download gff for
BO12230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42343-RD | 324..905 | 9..593 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:06 Download gff for
BO12230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21441427..21441754 | 264..593 | 99 | <- | Minus |
X | 21442422..21442675 | 9..263 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:05:16 Download gff for
BO12230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21312454..21312781 | 264..593 | 99 | <- | Minus |
arm_X | 21313449..21313702 | 9..263 | 98 | | Minus |
BO12230.complete Sequence
604 bp assembled on 2006-10-11
GenBank Submission: FJ632368
> BO12230.complete
GAAGTTATCAGTCGACATGATGAACTTGCTGGTGGTGAAGGAGAGCGGCG
AGCGGATCGCCGACATCAGCTGTAGCCAGGAGCATACTACCAAATTTTCA
CCAAAATTGTCCCAAGTAGCCAAACATCGCAAGCTGGCGCAGCTCGAGAT
TGCATCAGGTTCGGGATTGGTGGGATTAGGAACGGGAACTGGTACCGGAA
GTGGGTGTGGTCCAGCTATTCGGTGGCAGCTATTGCTACTGCTCTTGCTC
GGTAACTGCATTGATCTTACCGTTTCGAACAAAATCTCCTCAGTGGGCGC
CTTCGAGCCGGACTTTGTGATTCCGCTGGAGAACGTGACCATCGCCCAAG
GTCGGGACGCGACCTTCACGTGCGTGGTGAACAACCTCGGTGGTCATCGG
GTGAGTGGTGACGGTTCGTCAGCCCCAGCCAAGGTATGTATCGGTTTCAA
GCGCAGCGTTGAATTCTCAACTTCCGTTCCGTTTCGATTAGTTCCGGTTC
GTTTCGTTTCGTTTCAACTCCTTTCGTTTTGTCCCCGATCTCTTTCGTTC
TGTTTGATTTGTCATTTCAAGTGCACAATATGCATAGCAAGCTTTCTAGA
CCAT
BO12230.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:37:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42343-RE | 573 | CG42343-PE | 1..570 | 17..586 | 2850 | 100 | Plus |
CG42343-RD | 573 | CG42343-PD | 1..570 | 17..586 | 2850 | 100 | Plus |
CG42343-RF | 1668 | CG42343-PF | 1..419 | 17..435 | 2095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:38:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42343-RE | 1472 | CG42343-RE | 246..815 | 17..586 | 2850 | 100 | Plus |
CG42343-RD | 1557 | CG42343-RD | 331..900 | 17..586 | 2850 | 100 | Plus |
CG42343-RF | 4386 | CG42343-RF | 246..664 | 17..435 | 2095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:37:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21441432..21441755 | 586..263 | 1620 | 100 | Minus |
X | 23542271 | X | 21442422..21442668 | 263..17 | 1235 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:37:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1098..1137 | 249..208 | 106 | 76.2 | Minus |
BO12230.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:45 Download gff for
BO12230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42343-RE | 1..573 | 17..590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:16 Download gff for
BO12230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42343-RE | 235..816 | 9..593 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:18 Download gff for
BO12230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42343-RD | 331..900 | 17..588 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:45 Download gff for
BO12230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42343-RE | 235..816 | 9..593 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:52 Download gff for
BO12230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42343-RD | 331..900 | 17..588 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:52 Download gff for
BO12230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21441430..21441754 | 264..588 | 99 | <- | Minus |
X | 21442422..21442668 | 17..263 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:18 Download gff for
BO12230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21312457..21312781 | 264..588 | 99 | <- | Minus |
arm_X | 21313449..21313695 | 17..263 | 100 | | Minus |
BO12230.pep Sequence
Translation from 16 to 604
> BO12230.pep
MMNLLVVKESGERIADISCSQEHTTKFSPKLSQVAKHRKLAQLEIASGSG
LVGLGTGTGTGSGCGPAIRWQLLLLLLLGNCIDLTVSNKISSVGAFEPDF
VIPLENVTIAQGRDATFTCVVNNLGGHRVSGDGSSAPAKVCIGFKRSVEF
STSVPFRLVPVRFVSFQLLSFCPRSLSFCLICHFKCTICIASFLDH
BO12230.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42343-PE | 190 | CG12565-PB | 1..190 | 1..190 | 983 | 100 | Plus |
CG42343-PD | 190 | CG12565-PA | 1..190 | 1..190 | 983 | 100 | Plus |
CG42343-PF | 555 | CG42343-PF | 1..140 | 1..140 | 712 | 100 | Plus |
CG42343-PC | 555 | CG42343-PC | 1..140 | 1..140 | 712 | 100 | Plus |
CG42343-PG | 534 | CG42343-PG | 1..132 | 1..142 | 595 | 85.9 | Plus |