Clone BO12232 Report

Search the DGRC for BO12232

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:122
Well:32
Vector:pDNR-Dual
Associated Gene/Transcriptdsx-c73A-RB
Protein status:BO12232.pep:
Sequenced Size:2590

Clone Sequence Records

BO12232.3prime Sequence

925 bp (803 high quality bases) assembled on 2006-04-20

> BO12232.3prime
ATGGTCTAGAAAGCTTGCGTCCCAAATGATGCTCTGCTGGAATTCGAGCA
CGCGATCCCACGGGAACTCCGGCTCATAGTCGTCCGTATCGGGTAGGGAT
CGCCTGGTCCGGCTTCCGAGTGCAGCCTCCTCCGCTGTGGTGGTCAGTTC
CGCTGTCGCGGCTGGAACTGCTTCCTCCGCCGGTTCCGTCTCCTGTTCTG
CCTGCACAGTGGTCCTGGCCTCCTCCTCCTCAGCCGCTGGTGTACTGCTG
CTCGGCTGCTCCTCGGCTCCGGTTCCCGATCCACTCGATATAGCTTCGAT
GGGCGGCAGATCGCCGCGCCGCTCGTTGTTGCGTCCGTAGTTGCTGCTCG
GGAAATTGTTGATCGAGAACTGATCCGGACGGAAGTTGGCGGAGCTGTGG
CTAACACCGCTCTCCGGTCGGTTGAGATACTGATACGAACTACTGCCTCC
GCTCTGGAAGCTCGAGTCCTGCGGCTGGTAGTTGGAGCTGATGGCCGAGC
TGCCCGAGGAGCTGGAGCCACCGTAGATGGGTCTGCCGTAGCTATCCTTT
TGGCCACCCACCGTGGTTCCCACCGAGGGGCGATAGAATGGCTTCTGGAG
TTGATACCTCTTGGGTGGCTGGTTGCTTGGCTTGCGCACCGAATATCCCG
GCTTAACGCACATCATGCCAAATACTCGGATTCCGGGCACGCTGGCATAG
GTGGGCTGGTCATGGGCCATGGGTCCCTCCATCTTGAAGTGATCGGGACA
GCGGCAGATGACCAAGTAGTGCGACTTGCCGGTTCGTGTGTTTTGGAGCG
CCAGAAGGGACCAATCCTTGGGCGAGCGGCACTCGCGCATCTCGGTGGTG
GGCTCGCAGGTCTTGGCCAATGTGATGGCCTTCTTCTTGGTATCGCCAAC
CAATTTTGTGGTATGCTGATCATCT

BO12232.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG32159-PB 2559 CG32159-RB 1650..2556 925..19 4485 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
dsx-c73A-RB 3496 CG32159-RB 1995..2901 925..19 4505 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16423390..16424100 19..729 3540 99.9 Plus
3L 28110227 3L 16424168..16424320 729..881 750 99.3 Plus
3L 28110227 3L 16426576..16426622 879..925 235 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:55:27 has no hits.

BO12232.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:02 Download gff for BO12232.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32159-PB 1650..2559 15..925 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:22 Download gff for BO12232.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32159-PB 1650..2559 15..925 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:50:05 Download gff for BO12232.3prime
Subject Subject Range Query Range Percent Splice Strand
dsx-c73A-RB 1995..2907 11..925 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:22:44 Download gff for BO12232.3prime
Subject Subject Range Query Range Percent Splice Strand
dsx-c73A-RB 1995..2907 11..925 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:22:44 Download gff for BO12232.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16423384..16424099 11..728 99 <- Plus
3L 16424168..16424318 729..879 99 <- Plus
3L 16426577..16426622 880..925 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:50:05 Download gff for BO12232.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16416484..16417199 11..728 99 <- Plus
arm_3L 16417268..16417418 729..879 99 <- Plus
arm_3L 16419677..16419722 880..925 100   Plus

BO12232.5prime Sequence

899 bp (823 high quality bases) assembled on 2006-04-20

> BO12232.5prime
GAAGTTATCAGTCGACATGGTGCGGTTAAGTGCAGCCTGGAGCTGCTGTT
TTTTGGCCCTGATTGCGTTGGTATCCACTGTCGCCTCCTCCGCTGCGGAT
TATCCGGGTGTCATCGAACTGGTGGGTTATAGCAATCGCCGCGCACGGAC
TTACTTCCAAGAGCAACCCCGCTCCAATCCCAATCCCAAGCCGGGTTTGA
CTTCGGCCAAAACCCGGGCGGATATTGAGACCGTGAAGCGGAATATCCGT
AAATACGATCGTTTGCTAGAGTTGGATACGAAAAATCTGCCAGAGCAGCA
AAAGGATATGCTCGCCAGGATTGTGGAGCGAGTGGCCAGGCTCAAGGAAT
CCCTGGACATTGAGGAGCAGCAATTTAACCAGCAGGAAGCTACCTCCTCC
AGGAGCAGTAGTAGTACCACCACTAGTGCATCCAGTACTCAAGAATCGCA
AACAGAAGCGGAAACGGAGCTGGATCAGGAGCCGATCGAGCAGAGCACAC
AGCTGCCCACTGGAGCCACCGAAGCTGAAACGGATCCCACCCTAATCCTA
GACGAAACTACGCTGCTGGAGCTGCAGAACACGATGAACGAGCAGGCTGC
CATGAGCACCATAATGAAGGAAATGCCCACGACCACGGATATGAGTCAGC
AGGAAGCGGAATCGGAGGTCCCCGACGAGGAGGGAGAGACCACCTCACCA
AATCTGACCACCCAATCGGAGGCAGCGACGACCAGTGATGAATCCCTCAC
CGATTCCACTGATCCCGATGATCAATTCGTAGCTGCCAGATCGAATAACA
ATATAGCGGCCATAACGGCAGCGGATGATGCCGATGGCACCACCACAACC
ACCGCCAATACGGGCAGTCAGCAGCGCACGTTGACCACCTGGGAAAAAC

BO12232.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG32159-PB 2559 CG32159-RB 1..873 17..889 4365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
dsx-c73A-RB 3496 CG32159-RB 346..1227 17..897 4385 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:51:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16450731..16451613 899..17 4370 99.7 Minus
Blast to na_te.dros performed on 2015-02-11 10:51:21 has no hits.

BO12232.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:03 Download gff for BO12232.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32159-PB 1..883 17..899 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:23 Download gff for BO12232.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32159-PB 1..883 17..899 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:04:57 Download gff for BO12232.5prime
Subject Subject Range Query Range Percent Splice Strand
dsx-c73A-RB 340..1228 11..899 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:40:52 Download gff for BO12232.5prime
Subject Subject Range Query Range Percent Splice Strand
dsx-c73A-RB 340..1228 11..899 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:40:52 Download gff for BO12232.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16450731..16451619 11..899 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:04:57 Download gff for BO12232.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16443831..16444719 11..899 99   Minus

BO12232.complete Sequence

2590 bp assembled on 2008-01-17

GenBank Submission: FJ632369

> BO12232.complete
GAAGTTATCAGTCGACATGGTGCGGTTAAGTGCAGCCTGGAGCTGCTGTT
TTTTGGCCCTGATTGCGTTGGTATCCACTGTCGCCTCCTCCGCTGCGGAT
TATCCGGGTGTCATCGAACTGGTGGGTTATAGCAATCGCCGCGCACGGAC
TTACTTCCAAGAGCAACCCCGCTCCAATCCCAATCCCAAGCCGGGTTTGA
CTTCGGCCAAAACCCGGGCGGATATTGAGACCGTGAAGCGGAATATCCGT
AAATACGATCGTTTGCTAGAGTTGGATACGAAAAATCTGCCAGAGCAGCA
AAAGGATATGCTCGCCAGGATTGTGGAGCGAGTGGCCAGGCTCAAGGAAT
CCCTGGACATTGAGGAGCAGCAATTTAACCAGCAGGAAGCTACCTCCTCC
AGGAGCAGTAGTAGTACCACCACTAGTGCATCCAGTACTCAAGAATCGCA
AACAGAAGCGGAAACGGAGCTGGATCAGGAGCCGATCGAGCAGAGCACAC
AGCTGCCCACTGGAGCCACCGAAGCTGAAACGGATCCCACCCTAATCCTA
GACGAAACTACGCTGCTGGAGCTGCAGAACACGATGAACGAGCAGGCTGC
CATGAGCACCATAATGAAGGAAATGCCCACGACCACGGATATGAGTCAGC
AGGAAGCGGAATCGGAGGTCCCCGACGAGGAGGGAGAGACCACCTCACCA
AATCTGACCACCCAATCGGAGGCAGCGACGACCAGTGATGAATCCCTCAC
CGATTCCACTGATCCCGATGATCAATTCGTAGCTGCCAGATCGAATAACA
ATATAGCGGCCATAACGGCAGCGGATGATGCCGATGGCACCACCACAACC
ACCGCCAATACGGGCAGTCAGCAGCGCACGTTGACCACCATGGGAAAACT
TAAGAATCGGGCCACCAAGCGACCCTTCGCCCACAAGGTCACCGCCGCCC
TGAAACGAGGAGGTCAGCGTCCGAGTAGCGTGAGTGCGGCAGCTGCGAGT
GCGGCAGCGGCCTCAAAACCCAGTAGCAGCACCACCACCGCCGCCGCCGC
CAGCAGCACCACCCAGAAACAGAAATTGGCCACCAACAGTTTCCAGCAGA
AGCAGCAGCAAGCGAAGCCCCTGCAAAAGGTCACACCTTCGATTGGCGGT
GGTGGATCATCCAACCCGTCCTCGGCATCCATTCCCTCGGCTACCACGAA
TTCCGCAGCTCCCTCCTTGCCTATCGAGCAATTGTATACCCGTACTCCCC
AGGCCAATATCCCATTGGCAGCAGCAGCAGCAGCAGCAACCTCATCCGCC
TCAGCAGCGGCAGCAGCAGGATCAGCAGGATCGGGAGCCACACCAGCCAC
CTACAGCAGCCAGCATGACAGCATGGTATACGATGGACATGTCAATGCGT
CGGCCTTGATCGACAGCCTGAACACAAACGCTCGGGAGGAATACTACCAG
CAGAAACTAGGAGCAGGCAACAAGGATAACAAGAAAACGGCGACAGCGAA
ACCGACGAAATATCATTATTATCCGCACAATCAGCACATCTATCTGCTGC
CAGAGTGTGCCATTCAGCAAGTTTGTAACGCCGTCTACGTGAGATTGAAC
TACACCCAACCACTGTGCGCCTGTCCATCCAGATATCGTGATCCCTGCTC
GGCCAGTCTGAATGAAGATGATCAGCATACCACAAAATTGGTTGGCGATA
CCAAGAAGAAGGCCATCACATTGGCCAAGACCTGCGAGGCCACCACCGAG
ATGCGCGAGTGCCGCTCGCCCAAGGATTGGTCCCTTCTGGCGCTCCAAAA
CACACGAACCGGCAAGTCGCACTACTTGGTCATCTGCCGCTGTCCCGATC
ACTTCAAGATGGAGGGACCCATGGCCCATGACCAGCCCACCTATGCCAGC
GTGCCCGGAATCCGAGTATTTGGCATGATGTGCGTTAAGCCGGGATATTC
GGTGCGCAAGCCAAGCAACCAGCCACCCAAGAGGTATCAACTCCAGAAGC
CATTCTATCGCCCCTCGGTGGGAACCACGGTGGGTGGCCAAAAGGATAGC
TACGGCAGACCCATCTACGGTGGCTCCAGCTCCTCGGGCAGCTCGGCCAT
CAGCTCCAACTACCAGCCGCAGGACTCGAGCTTCCAGAGCGGAGGCAGTA
GTTCGTATCAGTATCTCAACCGACCGGAGAGCGGTGTTAGCCACAGCTCC
GCCAACTTCCGTCCGGATCAGTTCTCGATCAACAATTTCCCGAGCAGCAA
CTACGGACGCAACAACGAGCGGCGCGGCGATCTGCCGCCCATCGAAGCTA
TATCGAGTGGATCGGGAACCGGAGCCGAGGAGCAGCCGAGCAGCAGTACA
CCAGCGGCTGAGGAGGAGGAGGCCAGGACCACTGTGCAGGCAGAACAGGA
GACGGAACCGGCGGAGGAAGCAGTTCCAGCCGCGACAGCGGAACTGACCA
CCACAGCGGAGGAGGCTGCACTCGGAAGCCGGACCAGGCGATCCCTACCC
GATACGGACGACTATGAGCCGGAGTTCCCGTGGGATCGCGTGCTCGAATT
CCAGCAGAGCATCATTTGGGACGCAAGCTTTCTAGACCAT

BO12232.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
dsx-c73A-RB 2559 CG32159-PB 1..2556 17..2572 12765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
dsx-c73A-RB 3496 CG32159-RB 346..2901 17..2572 12765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16450147..16451613 1483..17 7335 100 Minus
3L 28110227 3L 16423390..16424100 2572..1862 3540 99.9 Minus
3L 28110227 3L 16424168..16424320 1862..1710 765 100 Minus
3L 28110227 3L 16426767..16426917 1632..1482 755 100 Minus
3L 28110227 3L 16426576..16426660 1712..1628 425 100 Minus
Blast to na_te.dros performed 2014-11-28 07:48:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2384 1051..1129 142 70 Plus

BO12232.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:04 Download gff for BO12232.complete
Subject Subject Range Query Range Percent Splice Strand
CG32159-RB 1..2559 17..2576 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:37:32 Download gff for BO12232.complete
Subject Subject Range Query Range Percent Splice Strand
CG32159-RB 342..2897 17..2574 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:10 Download gff for BO12232.complete
Subject Subject Range Query Range Percent Splice Strand
dsx-c73A-RB 346..2901 17..2574 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:05 Download gff for BO12232.complete
Subject Subject Range Query Range Percent Splice Strand
CG32159-RB 336..2903 11..2580 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:04:27 Download gff for BO12232.complete
Subject Subject Range Query Range Percent Splice Strand
dsx-c73A-RB 346..2901 17..2574 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:04:27 Download gff for BO12232.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16423388..16424099 1863..2574 99 <- Minus
3L 16424168..16424318 1712..1862 100 <- Minus
3L 16426577..16426655 1633..1711 100 <- Minus
3L 16426767..16426915 1484..1632 100 <- Minus
3L 16450147..16451613 17..1483 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:10 Download gff for BO12232.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16419677..16419755 1633..1711 100 <- Minus
arm_3L 16419867..16420015 1484..1632 100 <- Minus
arm_3L 16417268..16417418 1712..1862 100 <- Minus
arm_3L 16416488..16417199 1863..2574 99 <- Minus
arm_3L 16443247..16444713 17..1483 100   Minus

BO12232.pep Sequence

Translation from 16 to 2590

> BO12232.pep
MVRLSAAWSCCFLALIALVSTVASSAADYPGVIELVGYSNRRARTYFQEQ
PRSNPNPKPGLTSAKTRADIETVKRNIRKYDRLLELDTKNLPEQQKDMLA
RIVERVARLKESLDIEEQQFNQQEATSSRSSSSTTTSASSTQESQTEAET
ELDQEPIEQSTQLPTGATEAETDPTLILDETTLLELQNTMNEQAAMSTIM
KEMPTTTDMSQQEAESEVPDEEGETTSPNLTTQSEAATTSDESLTDSTDP
DDQFVAARSNNNIAAITAADDADGTTTTTANTGSQQRTLTTMGKLKNRAT
KRPFAHKVTAALKRGGQRPSSVSAAAASAAAASKPSSSTTTAAAASSTTQ
KQKLATNSFQQKQQQAKPLQKVTPSIGGGGSSNPSSASIPSATTNSAAPS
LPIEQLYTRTPQANIPLAAAAAAATSSASAAAAAGSAGSGATPATYSSQH
DSMVYDGHVNASALIDSLNTNAREEYYQQKLGAGNKDNKKTATAKPTKYH
YYPHNQHIYLLPECAIQQVCNAVYVRLNYTQPLCACPSRYRDPCSASLNE
DDQHTTKLVGDTKKKAITLAKTCEATTEMRECRSPKDWSLLALQNTRTGK
SHYLVICRCPDHFKMEGPMAHDQPTYASVPGIRVFGMMCVKPGYSVRKPS
NQPPKRYQLQKPFYRPSVGTTVGGQKDSYGRPIYGGSSSSGSSAISSNYQ
PQDSSFQSGGSSSYQYLNRPESGVSHSSANFRPDQFSINNFPSSNYGRNN
ERRGDLPPIEAISSGSGTGAEEQPSSSTPAAEEEEARTTVQAEQETEPAE
EAVPAATAELTTTAEEAALGSRTRRSLPDTDDYEPEFPWDRVLEFQQSII
WDASFLDH

BO12232.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:26:02
Subject Length Description Subject Range Query Range Score Percent Strand
dsx-c73A-PB 852 CG32159-PB 1..852 1..852 4355 100 Plus
Muc68D-PB 1514 CG6004-PB 602..1279 121..817 204 20.8 Plus
CG46026-PA 666 CG46026-PA 320..651 131..447 198 23.2 Plus
Sgs1-PA 1286 CG3047-PA 597..921 126..452 196 23.4 Plus
Muc68Ca-PA 3135 CG18331-PA 127..887 113..828 196 19.2 Plus
Sgs1-PA 1286 CG3047-PA 501..825 126..452 194 22.8 Plus
Muc68D-PB 1514 CG6004-PB 270..929 109..834 191 18.9 Plus
Sgs1-PA 1286 CG3047-PA 657..976 123..443 185 23.1 Plus
Sgs1-PA 1286 CG3047-PA 389..729 126..452 184 21.6 Plus
Sgs1-PA 1286 CG3047-PA 211..544 124..443 180 22 Plus
Sgs1-PA 1286 CG3047-PA 741..1065 126..452 180 22.5 Plus
Sgs1-PA 1286 CG3047-PA 709..1024 126..443 179 23.1 Plus
Sgs1-PA 1286 CG3047-PA 465..809 123..452 176 22 Plus
Sgs1-PA 1286 CG3047-PA 805..1104 126..443 175 23.6 Plus
Muc68D-PB 1514 CG6004-PB 742..1107 110..505 172 20.7 Plus
CG46026-PA 666 CG46026-PA 269..569 131..445 172 23.7 Plus
CG46026-PA 666 CG46026-PA 206..516 130..448 171 24.3 Plus
Sgs1-PA 1286 CG3047-PA 277..617 126..452 170 21.4 Plus
Sgs1-PA 1286 CG3047-PA 837..1158 126..443 168 21.7 Plus
CG46026-PA 666 CG46026-PA 146..467 126..445 166 22.9 Plus
CG46026-PA 666 CG46026-PA 422..660 131..400 166 26.3 Plus
CG46026-PA 666 CG46026-PA 235..538 131..431 164 21 Plus
CG46026-PA 666 CG46026-PA 121..399 160..445 162 24.4 Plus
CG46026-PA 666 CG46026-PA 388..662 131..427 161 24.4 Plus