Clone Sequence Records
BO12233.3prime Sequence
920 bp (833 high quality bases) assembled on 2006-04-20
> BO12233.3prime
ATGGTCTAGAAAGCTTGCGAGACCCGTGTGGCTCGTCTGCAGCTGCTCGA
TGGAGATGGATAGCTGTTCCAGGCGCTGCATCAGCTGCAGCATGTTCTCC
TGCGCCTTGTTGGTGTTGAACTCGTTGCCGTGCTCCAGCGAATCCTCCTC
GGCGGCAGCCAGTTCGAAATGCAATTTGGCCAGGCTCTCCTGCTGCTCGC
GAATCTTGGTCATCTGGTCCATTGTGCAGCCGGAGCCGAATGCCCTCAGC
TTGCCGGAGTGAAAGTCGTCCAGCAGTCCGAGGAGAGCTCTTTCCATGTG
CTTAACATCGGGAACTTCGGAGACAAAGGAATGATGTTTTATTGGACGAT
CGTCGAACTTATCGCTGTGGGCACTGGCGTTTGGCATCGACGCTGTGGGA
TTCTTGCGGCGCTGCAATCGCGGTGTGTTCTGATTGCTATTGCTGTGCTG
ATTGTTATTGTTGGGTTTCGTGCTATCGTTGTTGTTGTTCTTGGGGGTGT
TGTGATTGTCTGTGGCTGTGGGATCAGGTGCTAGCCACTCGCTGCTCACC
AAGGTGATGGCGTTCAGGCTGTTGGCACTGTTGGTGGTGGGTTCCAACTC
ATCACGATCTTTCAGGAGTTTGCGCGGCCGGGTCTTGAACTCGAATCTTT
CGTCGCCGGCACCCCCGCCACTGCCGCCGTGCGCCTGCGGGCGTGGCCGG
CGCTCATTCACATAGGTCACCTTGGTGGCCGCTTGACCCTGGCCCTGGCT
CTTGTCCTTCTCCTTTTCGGATATCGTCCTCTCGATGGAGCAGGAGGCCG
AGTTTCTGCTGCGAGTGGTCTCGCCGCTGGATATGCCTTTGATTTTGATA
TTCGGAAACGGCGGGCGAGGCGGGTGTGGCCGATTTCGGTGCGCTTTGGG
CTTCCTCTCCGTTTCCACGT
BO12233.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10874-PA | 951 | CG10874-RA | 110..948 | 857..19 | 4195 | 100 | Minus |
CG10874-PB | 375 | CG10874-RB | 110..358 | 857..609 | 1245 | 100 | Minus |
CG10874-PA | 951 | CG10874-RA | 61..111 | 907..857 | 255 | 100 | Minus |
CG10874-PB | 375 | CG10874-RB | 61..111 | 907..857 | 255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:53:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10874-RA | 1583 | CG10874-RA | 170..1071 | 920..19 | 4465 | 99.8 | Minus |
CG10874-RD | 1586 | CG10874-RD | 170..1074 | 920..19 | 4425 | 99.4 | Minus |
CG10874-RC | 1292 | CG10874-RC | 170..481 | 920..609 | 1515 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:53:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2190706..2191080 | 236..610 | 1875 | 100 | Plus |
2L | 23513712 | 2L | 2191850..2192090 | 609..849 | 1205 | 100 | Plus |
2L | 23513712 | 2L | 2190426..2190644 | 19..237 | 1095 | 100 | Plus |
2L | 23513712 | 2L | 2192153..2192217 | 857..920 | 275 | 98.5 | Plus |
Blast to na_te.dros performed 2015-02-12 03:53:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2474 | 589..434 | 201 | 62.7 | Minus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2492..2681 | 620..434 | 176 | 57.6 | Minus |
BO12233.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:04 Download gff for
BO12233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10874-PA | 47..951 | 16..920 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:24 Download gff for
BO12233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10874-PA | 47..951 | 16..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:55:33 Download gff for
BO12233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10874-RA | 170..1079 | 10..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:47:04 Download gff for
BO12233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10874-RA | 170..1079 | 10..920 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:47:04 Download gff for
BO12233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2191850..2192090 | 609..849 | 100 | <- | Plus |
2L | 2192147..2192217 | 850..920 | 97 | | Plus |
2L | 2190418..2190643 | 10..236 | 98 | <- | Plus |
2L | 2190707..2191078 | 237..608 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:55:33 Download gff for
BO12233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2190418..2190643 | 10..236 | 98 | <- | Plus |
arm_2L | 2190707..2191078 | 237..608 | 100 | <- | Plus |
arm_2L | 2191850..2192090 | 609..849 | 100 | <- | Plus |
arm_2L | 2192147..2192217 | 850..920 | 97 | | Plus |
BO12233.5prime Sequence
884 bp (789 high quality bases) assembled on 2006-04-20
> BO12233.5prime
GAAGTTATCAGTCGACATGGAGCCCAACGATGAGGTGGTGGAGCGACAGA
AGCTGGTGAACGACGTGGAAACGGAGGAGGAAGCCCAAAGCGCACCGAAA
TCGGCCACACCCGCCTCGCCCGCCGTTCCGAATATCAAAATCAAAGGCAT
ATCCAGCGGCGAGACCACTCGCAGCAGAAACTCGGCCTCCTGCTCCATCG
AGAGGACGATATCCGAAAAGGAGAAGGACAAGAGCCAGGGCCAGGGTCAA
GCGGCCACCAAGGTGACCTATGTGAATGAGCGCCGGCCACGCCCGCAGGC
GCACGGCGGCAGTGGCGGGGGTGCCGGCGACGAAAGATTCGAGTTCAAGA
CCCGGCCGCGCAAACTCCTGAAAGATCGTGATGAGTTGGAACCCACCACC
AACAGTGCCAACAGCCTGAACGCCATCACCTTGGTGAGCAGCGAGTGGCT
AGCACCTGATCCCACAGCCACAGACAATCACAACACCCCCAAGAACAACA
ACAACGATAGCACGAAACCCAACAATAACAATCAGCACAGCAATAGCAAT
CAGAACACACCGCGATTGCAGCGCCGCAAGAATCCCACAGCGTCGATGCC
AAACGCCAGTGCCCACAGCGATAAGTTCGACGATCGTCCAATAAAACATC
ATTCCTTTGTCTCCGAAGTTCCCGATGTTAAGCACATGGAAAGAGCTCTC
CTCGGACTGCTGGACGACTTTCACTCCGGCAAGCTGAGGGCATTCGGCTC
CGGCTGCACAATGGACCAGATGACCAAGATTCGCGAGCAGCAGGAGAGCC
TGGCCAAATTGCATTTCGAACTGGCTGCCGCCGAGGAGGATTCGCTGGGA
CACGGGCACGAGTTCAACACCAACAAGGCGCAGG
BO12233.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10874-PA | 951 | CG10874-RA | 1..832 | 17..848 | 4160 | 100 | Plus |
CG10874-PB | 375 | CG10874-RB | 1..358 | 17..374 | 1790 | 100 | Plus |
CG10874-PA | 951 | CG10874-RA | 842..868 | 858..884 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:40:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10874-RA | 1583 | CG10874-RA | 124..991 | 17..884 | 4280 | 99.5 | Plus |
CG10874-RD | 1586 | CG10874-RD | 124..994 | 17..884 | 4240 | 99.2 | Plus |
CG10874-RC | 1292 | CG10874-RC | 124..481 | 17..374 | 1790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:40:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2190706..2191080 | 747..373 | 1875 | 100 | Minus |
2L | 23513712 | 2L | 2191850..2192090 | 374..134 | 1205 | 100 | Minus |
2L | 23513712 | 2L | 2190506..2190644 | 884..746 | 635 | 97.1 | Minus |
2L | 23513712 | 2L | 2192147..2192263 | 133..17 | 585 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 00:40:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2474 | 394..549 | 201 | 62.7 | Plus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2492..2681 | 363..549 | 176 | 57.6 | Plus |
BO12233.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:05 Download gff for
BO12233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10874-PA | 1..868 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:26 Download gff for
BO12233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10874-PA | 1..868 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:35:00 Download gff for
BO12233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10874-RA | 115..991 | 7..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:05:38 Download gff for
BO12233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10874-RA | 115..991 | 7..884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:05:38 Download gff for
BO12233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2191850..2192090 | 134..374 | 100 | <- | Minus |
2L | 2192147..2192272 | 7..133 | 97 | | Minus |
2L | 2190506..2190643 | 747..884 | 97 | <- | Minus |
2L | 2190707..2191078 | 375..746 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:35:00 Download gff for
BO12233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2190506..2190643 | 747..884 | 97 | <- | Minus |
arm_2L | 2190707..2191078 | 375..746 | 100 | <- | Minus |
arm_2L | 2191850..2192090 | 134..374 | 100 | <- | Minus |
arm_2L | 2192147..2192272 | 7..133 | 97 | | Minus |
BO12233.complete Sequence
982 bp assembled on 2006-10-11
GenBank Submission: FJ632370
> BO12233.complete
GAAGTTATCAGTCGACATGGAGCCCAACGATGAGGTGGTGGAGCGACAGA
AGCTGGTGAACGACGTGGAAACGGAGGAGGAAGCCCAAAGCGCACCGAAA
TCGGCCACACCCGCCTCGCCCGCCGTTCCGAATATCAAAATCAAAGGCAT
ATCCAGCGGCGAGACCACTCGCAGCAGAAACTCGGCCTCCTGCTCCATCG
AGAGGACGATATCCGAAAAGGAGAAGGACAAGAGCCAGGGCCAGGGTCAA
GCGGCCACCAAGGTGACCTATGTGAATGAGCGCCGGCCACGCCCGCAGGC
GCACGGCGGCAGTGGCGGGGGTGCCGGCGACGAAAGATTCGAGTTCAAGA
CCCGGCCGCGCAAACTCCTGAAAGATCGTGATGAGTTGGAACCCACCACC
AACAGTGCCAACAGCCTGAACGCCATCACCTTGGTGAGCAGCGAGTGGCT
AGCACCTGATCCCACAGCCACAGACAATCACAACACCCCCAAGAACAACA
ACAACGATAGCACGAAACCCAACAATAACAATCAGCACAGCAATAGCAAT
CAGAACACACCGCGATTGCAGCGCCGCAAGAATCCCACAGCGTCGATGCC
AAACGCCAGTGCCCACAGCGATAAGTTCGACGATCGTCCAATAAAACATC
ATTCCTTTGTCTCCGAAGTTCCCGATGTTAAGCACATGGAAAGAGCTCTC
CTCGGACTGCTGGACGACTTTCACTCCGGCAAGCTGAGGGCATTCGGCTC
CGGCTGCACAATGGACCAGATGACCAAGATTCGCGAGCAGCAGGAGAGCC
TGGCCAAATTGCATTTCGAACTGGCTGCCGCCGAGGAGGATTCGCTGGAG
CACGGCAACGAGTTCAACACCAACAAGGCGCAGGAGAACATGCTGCAGCT
GATGCAGCGCCTGGAACAGCTATCCATCTCCATCGAGCAGCTGCAGACGA
GCCACACGGGTCTCGCAAGCTTTCTAGACCAT
BO12233.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:24:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10874-RA | 951 | CG10874-PA | 1..948 | 17..964 | 4740 | 100 | Plus |
CG10874-RD | 954 | CG10874-PD | 1..951 | 17..964 | 4675 | 99.7 | Plus |
CG10874-RC | 660 | CG10874-PC | 1..358 | 17..374 | 1790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:24:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10874-RA | 1583 | CG10874-RA | 124..1071 | 17..964 | 4740 | 100 | Plus |
CG10874-RD | 1586 | CG10874-RD | 124..1074 | 17..964 | 4675 | 99.7 | Plus |
CG10874-RC | 1292 | CG10874-RC | 124..481 | 17..374 | 1790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:24:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2190706..2191080 | 747..373 | 1875 | 100 | Minus |
2L | 23513712 | 2L | 2191850..2192090 | 374..134 | 1205 | 100 | Minus |
2L | 23513712 | 2L | 2190426..2190644 | 964..746 | 1095 | 100 | Minus |
2L | 23513712 | 2L | 2192147..2192263 | 133..17 | 585 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 22:24:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2474 | 394..549 | 201 | 62.7 | Plus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2492..2681 | 363..549 | 176 | 57.6 | Plus |
BO12233.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:46 Download gff for
BO12233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10874-RA | 1..951 | 17..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:17 Download gff for
BO12233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10874-RA | 101..1065 | 7..973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:57:12 Download gff for
BO12233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10874-RA | 124..1071 | 17..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:46 Download gff for
BO12233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10874-RA | 101..1065 | 7..973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:00:12 Download gff for
BO12233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10874-RA | 124..1071 | 17..966 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:00:12 Download gff for
BO12233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2190423..2190643 | 747..966 | 99 | <- | Minus |
2L | 2190707..2191078 | 375..746 | 100 | <- | Minus |
2L | 2191850..2192090 | 134..374 | 100 | <- | Minus |
2L | 2192147..2192263 | 17..133 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:57:12 Download gff for
BO12233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2190423..2190643 | 747..966 | 99 | <- | Minus |
arm_2L | 2190707..2191078 | 375..746 | 100 | <- | Minus |
arm_2L | 2191850..2192090 | 134..374 | 100 | <- | Minus |
arm_2L | 2192147..2192263 | 17..133 | 100 | | Minus |
BO12233.pep Sequence
Translation from 16 to 982
> BO12233.pep
MEPNDEVVERQKLVNDVETEEEAQSAPKSATPASPAVPNIKIKGISSGET
TRSRNSASCSIERTISEKEKDKSQGQGQAATKVTYVNERRPRPQAHGGSG
GGAGDERFEFKTRPRKLLKDRDELEPTTNSANSLNAITLVSSEWLAPDPT
ATDNHNTPKNNNNDSTKPNNNNQHSNSNQNTPRLQRRKNPTASMPNASAH
SDKFDDRPIKHHSFVSEVPDVKHMERALLGLLDDFHSGKLRAFGSGCTMD
QMTKIREQQESLAKLHFELAAAEEDSLEHGNEFNTNKAQENMLQLMQRLE
QLSISIEQLQTSHTGLASFLDH
BO12233.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10874-PA | 316 | CG10874-PA | 1..316 | 1..316 | 1634 | 100 | Plus |
CG10874-PD | 317 | CG10874-PD | 1..317 | 1..316 | 1622 | 99.7 | Plus |
CG10874-PB | 218 | CG10874-PB | 1..122 | 1..122 | 605 | 98.4 | Plus |
CG10874-PC | 219 | CG10874-PC | 1..122 | 1..122 | 605 | 98.4 | Plus |
CG10874-PB | 218 | CG10874-PB | 66..218 | 163..316 | 514 | 70.7 | Plus |
CG10874-PC | 219 | CG10874-PC | 66..219 | 163..316 | 502 | 70.3 | Plus |