Clone BO12233 Report

Search the DGRC for BO12233

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:122
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG10874-RA
Protein status:BO12233.pep: validated full length
Sequenced Size:982

Clone Sequence Records

BO12233.3prime Sequence

920 bp (833 high quality bases) assembled on 2006-04-20

> BO12233.3prime
ATGGTCTAGAAAGCTTGCGAGACCCGTGTGGCTCGTCTGCAGCTGCTCGA
TGGAGATGGATAGCTGTTCCAGGCGCTGCATCAGCTGCAGCATGTTCTCC
TGCGCCTTGTTGGTGTTGAACTCGTTGCCGTGCTCCAGCGAATCCTCCTC
GGCGGCAGCCAGTTCGAAATGCAATTTGGCCAGGCTCTCCTGCTGCTCGC
GAATCTTGGTCATCTGGTCCATTGTGCAGCCGGAGCCGAATGCCCTCAGC
TTGCCGGAGTGAAAGTCGTCCAGCAGTCCGAGGAGAGCTCTTTCCATGTG
CTTAACATCGGGAACTTCGGAGACAAAGGAATGATGTTTTATTGGACGAT
CGTCGAACTTATCGCTGTGGGCACTGGCGTTTGGCATCGACGCTGTGGGA
TTCTTGCGGCGCTGCAATCGCGGTGTGTTCTGATTGCTATTGCTGTGCTG
ATTGTTATTGTTGGGTTTCGTGCTATCGTTGTTGTTGTTCTTGGGGGTGT
TGTGATTGTCTGTGGCTGTGGGATCAGGTGCTAGCCACTCGCTGCTCACC
AAGGTGATGGCGTTCAGGCTGTTGGCACTGTTGGTGGTGGGTTCCAACTC
ATCACGATCTTTCAGGAGTTTGCGCGGCCGGGTCTTGAACTCGAATCTTT
CGTCGCCGGCACCCCCGCCACTGCCGCCGTGCGCCTGCGGGCGTGGCCGG
CGCTCATTCACATAGGTCACCTTGGTGGCCGCTTGACCCTGGCCCTGGCT
CTTGTCCTTCTCCTTTTCGGATATCGTCCTCTCGATGGAGCAGGAGGCCG
AGTTTCTGCTGCGAGTGGTCTCGCCGCTGGATATGCCTTTGATTTTGATA
TTCGGAAACGGCGGGCGAGGCGGGTGTGGCCGATTTCGGTGCGCTTTGGG
CTTCCTCTCCGTTTCCACGT

BO12233.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG10874-PA 951 CG10874-RA 110..948 857..19 4195 100 Minus
CG10874-PB 375 CG10874-RB 110..358 857..609 1245 100 Minus
CG10874-PA 951 CG10874-RA 61..111 907..857 255 100 Minus
CG10874-PB 375 CG10874-RB 61..111 907..857 255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG10874-RA 1583 CG10874-RA 170..1071 920..19 4465 99.8 Minus
CG10874-RD 1586 CG10874-RD 170..1074 920..19 4425 99.4 Minus
CG10874-RC 1292 CG10874-RC 170..481 920..609 1515 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2190706..2191080 236..610 1875 100 Plus
2L 23513712 2L 2191850..2192090 609..849 1205 100 Plus
2L 23513712 2L 2190426..2190644 19..237 1095 100 Plus
2L 23513712 2L 2192153..2192217 857..920 275 98.5 Plus
Blast to na_te.dros performed 2015-02-12 03:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2316..2474 589..434 201 62.7 Minus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2492..2681 620..434 176 57.6 Minus

BO12233.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:04 Download gff for BO12233.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10874-PA 47..951 16..920 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:24 Download gff for BO12233.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10874-PA 47..951 16..920 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:55:33 Download gff for BO12233.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10874-RA 170..1079 10..920 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:47:04 Download gff for BO12233.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10874-RA 170..1079 10..920 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:47:04 Download gff for BO12233.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2191850..2192090 609..849 100 <- Plus
2L 2192147..2192217 850..920 97   Plus
2L 2190418..2190643 10..236 98 <- Plus
2L 2190707..2191078 237..608 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:55:33 Download gff for BO12233.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2190418..2190643 10..236 98 <- Plus
arm_2L 2190707..2191078 237..608 100 <- Plus
arm_2L 2191850..2192090 609..849 100 <- Plus
arm_2L 2192147..2192217 850..920 97   Plus

BO12233.5prime Sequence

884 bp (789 high quality bases) assembled on 2006-04-20

> BO12233.5prime
GAAGTTATCAGTCGACATGGAGCCCAACGATGAGGTGGTGGAGCGACAGA
AGCTGGTGAACGACGTGGAAACGGAGGAGGAAGCCCAAAGCGCACCGAAA
TCGGCCACACCCGCCTCGCCCGCCGTTCCGAATATCAAAATCAAAGGCAT
ATCCAGCGGCGAGACCACTCGCAGCAGAAACTCGGCCTCCTGCTCCATCG
AGAGGACGATATCCGAAAAGGAGAAGGACAAGAGCCAGGGCCAGGGTCAA
GCGGCCACCAAGGTGACCTATGTGAATGAGCGCCGGCCACGCCCGCAGGC
GCACGGCGGCAGTGGCGGGGGTGCCGGCGACGAAAGATTCGAGTTCAAGA
CCCGGCCGCGCAAACTCCTGAAAGATCGTGATGAGTTGGAACCCACCACC
AACAGTGCCAACAGCCTGAACGCCATCACCTTGGTGAGCAGCGAGTGGCT
AGCACCTGATCCCACAGCCACAGACAATCACAACACCCCCAAGAACAACA
ACAACGATAGCACGAAACCCAACAATAACAATCAGCACAGCAATAGCAAT
CAGAACACACCGCGATTGCAGCGCCGCAAGAATCCCACAGCGTCGATGCC
AAACGCCAGTGCCCACAGCGATAAGTTCGACGATCGTCCAATAAAACATC
ATTCCTTTGTCTCCGAAGTTCCCGATGTTAAGCACATGGAAAGAGCTCTC
CTCGGACTGCTGGACGACTTTCACTCCGGCAAGCTGAGGGCATTCGGCTC
CGGCTGCACAATGGACCAGATGACCAAGATTCGCGAGCAGCAGGAGAGCC
TGGCCAAATTGCATTTCGAACTGGCTGCCGCCGAGGAGGATTCGCTGGGA
CACGGGCACGAGTTCAACACCAACAAGGCGCAGG

BO12233.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10874-PA 951 CG10874-RA 1..832 17..848 4160 100 Plus
CG10874-PB 375 CG10874-RB 1..358 17..374 1790 100 Plus
CG10874-PA 951 CG10874-RA 842..868 858..884 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG10874-RA 1583 CG10874-RA 124..991 17..884 4280 99.5 Plus
CG10874-RD 1586 CG10874-RD 124..994 17..884 4240 99.2 Plus
CG10874-RC 1292 CG10874-RC 124..481 17..374 1790 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2190706..2191080 747..373 1875 100 Minus
2L 23513712 2L 2191850..2192090 374..134 1205 100 Minus
2L 23513712 2L 2190506..2190644 884..746 635 97.1 Minus
2L 23513712 2L 2192147..2192263 133..17 585 100 Minus
Blast to na_te.dros performed 2015-02-10 00:40:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2316..2474 394..549 201 62.7 Plus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2492..2681 363..549 176 57.6 Plus

BO12233.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:05 Download gff for BO12233.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10874-PA 1..868 17..884 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:26 Download gff for BO12233.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10874-PA 1..868 17..884 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:35:00 Download gff for BO12233.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10874-RA 115..991 7..884 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:05:38 Download gff for BO12233.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10874-RA 115..991 7..884 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:05:38 Download gff for BO12233.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2191850..2192090 134..374 100 <- Minus
2L 2192147..2192272 7..133 97   Minus
2L 2190506..2190643 747..884 97 <- Minus
2L 2190707..2191078 375..746 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:35:00 Download gff for BO12233.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2190506..2190643 747..884 97 <- Minus
arm_2L 2190707..2191078 375..746 100 <- Minus
arm_2L 2191850..2192090 134..374 100 <- Minus
arm_2L 2192147..2192272 7..133 97   Minus

BO12233.complete Sequence

982 bp assembled on 2006-10-11

GenBank Submission: FJ632370

> BO12233.complete
GAAGTTATCAGTCGACATGGAGCCCAACGATGAGGTGGTGGAGCGACAGA
AGCTGGTGAACGACGTGGAAACGGAGGAGGAAGCCCAAAGCGCACCGAAA
TCGGCCACACCCGCCTCGCCCGCCGTTCCGAATATCAAAATCAAAGGCAT
ATCCAGCGGCGAGACCACTCGCAGCAGAAACTCGGCCTCCTGCTCCATCG
AGAGGACGATATCCGAAAAGGAGAAGGACAAGAGCCAGGGCCAGGGTCAA
GCGGCCACCAAGGTGACCTATGTGAATGAGCGCCGGCCACGCCCGCAGGC
GCACGGCGGCAGTGGCGGGGGTGCCGGCGACGAAAGATTCGAGTTCAAGA
CCCGGCCGCGCAAACTCCTGAAAGATCGTGATGAGTTGGAACCCACCACC
AACAGTGCCAACAGCCTGAACGCCATCACCTTGGTGAGCAGCGAGTGGCT
AGCACCTGATCCCACAGCCACAGACAATCACAACACCCCCAAGAACAACA
ACAACGATAGCACGAAACCCAACAATAACAATCAGCACAGCAATAGCAAT
CAGAACACACCGCGATTGCAGCGCCGCAAGAATCCCACAGCGTCGATGCC
AAACGCCAGTGCCCACAGCGATAAGTTCGACGATCGTCCAATAAAACATC
ATTCCTTTGTCTCCGAAGTTCCCGATGTTAAGCACATGGAAAGAGCTCTC
CTCGGACTGCTGGACGACTTTCACTCCGGCAAGCTGAGGGCATTCGGCTC
CGGCTGCACAATGGACCAGATGACCAAGATTCGCGAGCAGCAGGAGAGCC
TGGCCAAATTGCATTTCGAACTGGCTGCCGCCGAGGAGGATTCGCTGGAG
CACGGCAACGAGTTCAACACCAACAAGGCGCAGGAGAACATGCTGCAGCT
GATGCAGCGCCTGGAACAGCTATCCATCTCCATCGAGCAGCTGCAGACGA
GCCACACGGGTCTCGCAAGCTTTCTAGACCAT

BO12233.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:24:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG10874-RA 951 CG10874-PA 1..948 17..964 4740 100 Plus
CG10874-RD 954 CG10874-PD 1..951 17..964 4675 99.7 Plus
CG10874-RC 660 CG10874-PC 1..358 17..374 1790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:24:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG10874-RA 1583 CG10874-RA 124..1071 17..964 4740 100 Plus
CG10874-RD 1586 CG10874-RD 124..1074 17..964 4675 99.7 Plus
CG10874-RC 1292 CG10874-RC 124..481 17..374 1790 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2190706..2191080 747..373 1875 100 Minus
2L 23513712 2L 2191850..2192090 374..134 1205 100 Minus
2L 23513712 2L 2190426..2190644 964..746 1095 100 Minus
2L 23513712 2L 2192147..2192263 133..17 585 100 Minus
Blast to na_te.dros performed 2014-11-26 22:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2316..2474 394..549 201 62.7 Plus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2492..2681 363..549 176 57.6 Plus

BO12233.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:46 Download gff for BO12233.complete
Subject Subject Range Query Range Percent Splice Strand
CG10874-RA 1..951 17..967 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:17 Download gff for BO12233.complete
Subject Subject Range Query Range Percent Splice Strand
CG10874-RA 101..1065 7..973 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:57:12 Download gff for BO12233.complete
Subject Subject Range Query Range Percent Splice Strand
CG10874-RA 124..1071 17..966 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:46 Download gff for BO12233.complete
Subject Subject Range Query Range Percent Splice Strand
CG10874-RA 101..1065 7..973 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:00:12 Download gff for BO12233.complete
Subject Subject Range Query Range Percent Splice Strand
CG10874-RA 124..1071 17..966 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:00:12 Download gff for BO12233.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2190423..2190643 747..966 99 <- Minus
2L 2190707..2191078 375..746 100 <- Minus
2L 2191850..2192090 134..374 100 <- Minus
2L 2192147..2192263 17..133 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:57:12 Download gff for BO12233.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2190423..2190643 747..966 99 <- Minus
arm_2L 2190707..2191078 375..746 100 <- Minus
arm_2L 2191850..2192090 134..374 100 <- Minus
arm_2L 2192147..2192263 17..133 100   Minus

BO12233.pep Sequence

Translation from 16 to 982

> BO12233.pep
MEPNDEVVERQKLVNDVETEEEAQSAPKSATPASPAVPNIKIKGISSGET
TRSRNSASCSIERTISEKEKDKSQGQGQAATKVTYVNERRPRPQAHGGSG
GGAGDERFEFKTRPRKLLKDRDELEPTTNSANSLNAITLVSSEWLAPDPT
ATDNHNTPKNNNNDSTKPNNNNQHSNSNQNTPRLQRRKNPTASMPNASAH
SDKFDDRPIKHHSFVSEVPDVKHMERALLGLLDDFHSGKLRAFGSGCTMD
QMTKIREQQESLAKLHFELAAAEEDSLEHGNEFNTNKAQENMLQLMQRLE
QLSISIEQLQTSHTGLASFLDH

BO12233.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG10874-PA 316 CG10874-PA 1..316 1..316 1634 100 Plus
CG10874-PD 317 CG10874-PD 1..317 1..316 1622 99.7 Plus
CG10874-PB 218 CG10874-PB 1..122 1..122 605 98.4 Plus
CG10874-PC 219 CG10874-PC 1..122 1..122 605 98.4 Plus
CG10874-PB 218 CG10874-PB 66..218 163..316 514 70.7 Plus
CG10874-PC 219 CG10874-PC 66..219 163..316 502 70.3 Plus