Clone Sequence Records
BO12234.3prime Sequence
904 bp (814 high quality bases) assembled on 2006-04-20
> BO12234.3prime
ATGGTCTAGAAAGCTTGCGTAACTGGCATTACTGCCCCTGGTGGAAATGC
TCATCCGTCGCTCCACGCGATTCGTGTGTGGCAGCAGGCATCCCGGCGGT
GGATACCGCCATCTACGTGGTCGGGACAACAGGGTGCCGTCCGTCGAAGC
TCTACTACGGAAGGGAGCATCGATGTCGCTGCGTGAGCTGCTCAAACTGC
TACTCGTAATCTCATCCGTAGACTCCGTATGGTCACCGTTGCTCTCCTCC
AAACAGGCGCTTCCGATGACCAGAAAGGAATGTCGACCGACGCCCAAAGA
CGAGGCATCGTAGAAGGAACAGGATCCCGAATCGGGCGTGAGGATTCCAT
CCGTATTGGCCACATCGCTGGTGGAGCGCTTGAGCTTGGGGAATTTGCTG
AAGACTCGCCAGAAGCGAAACACATCGCGAAAAACATTCTGCACTTGATC
CACGCTCTCTCTGACGGAAATCTCGTGAAAACAGGAGCAGGATAACTCCC
TGAATCGGCGCTGACCCTCTTCCAAGCTGACCATTCGATCGCCCGGCTGA
TCTGTCTTATTGCCCACCAGTATGACAGGAATATCCAGTGCGTATTCTTT
ACTGGCCGAGCCCAACTTGCGTCTTCGTTTATTGTAATTGATGAGGAACT
TTAGGCGACTGCACTCGTCGAAGGAACACTTGTCCGTAATGGAGTACATT
AGTATAAATGCGTCGGCCCAGCGGATGTTGGACTCCAGACTAACTCCATC
TAGTTCTTGTAGCTGACCGGTGGCGTCCAGAATGTCAAACTGAATCTGCT
CCTTGTCCAGCGTGGTTTGGCAGGTGTAAATCTTCTCCAGATTAAGATCA
TACTCGGCCAATGAAGCGTCGGGTAATAAAACGCACCACCATGGCCGTTT
TTTC
BO12234.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5160-PA | 987 | CG5160-RA | 147..984 | 856..19 | 4165 | 99.8 | Minus |
| CG5160-PA | 987 | CG5160-RA | 102..147 | 902..857 | 230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:49:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5160-RB | 1173 | CG5160-RB | 197..1079 | 902..19 | 4380 | 99.8 | Minus |
| CG5160-RA | 1613 | CG5160-RA | 637..1519 | 902..19 | 4380 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:49:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7391078..7391503 | 19..444 | 2130 | 100 | Plus |
| 2L | 23513712 | 2L | 7391860..7392019 | 597..756 | 800 | 100 | Plus |
| 2L | 23513712 | 2L | 7391644..7391798 | 443..597 | 775 | 100 | Plus |
| 2L | 23513712 | 2L | 7392075..7392213 | 756..895 | 635 | 98.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:49:51 has no hits.
BO12234.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:06 Download gff for
BO12234.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5160-PA | 100..987 | 18..904 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:27 Download gff for
BO12234.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5160-PA | 100..987 | 18..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:49:18 Download gff for
BO12234.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5160-RA | 635..1519 | 19..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:04:07 Download gff for
BO12234.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5160-RA | 635..1519 | 19..904 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:04:07 Download gff for
BO12234.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7391074..7391503 | 14..444 | 99 | <- | Plus |
| 2L | 7391646..7391798 | 445..597 | 100 | <- | Plus |
| 2L | 7391861..7392019 | 598..756 | 100 | <- | Plus |
| 2L | 7392076..7392213 | 757..895 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:49:18 Download gff for
BO12234.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7391074..7391503 | 14..444 | 99 | <- | Plus |
| arm_2L | 7391646..7391798 | 445..597 | 100 | <- | Plus |
| arm_2L | 7391861..7392019 | 598..756 | 100 | <- | Plus |
| arm_2L | 7392076..7392213 | 757..895 | 98 | | Plus |
BO12234.5prime Sequence
884 bp (765 high quality bases) assembled on 2006-04-20
> BO12234.5prime
GAAGTTATCAGTCGACATGAATGCCACCTCGCCAAAGTCATCGCTGGTCA
AGTTGGGTCTGCATACCAATAAACAAAAGACTCTGAAGGTTATGGTCCTG
GGCCAAAGTGGTGTGGGAAAAACGGCCATGGTGGTGCGTTTTATTACCCG
ACGCTTCATTGGCGAGTATGATCCTAATCTGGAGAAGATTTACACCTGCC
AAACCACGCTGGACAAGGAGCAGATTCAGTTTGACATTCTGGACGCCACC
GGTCAGCTACAAGAACTAGATGGAGTTAGTCTGGAGTCCAACATCCGCTG
GGCCGACGCATTTATACTAATGTACTCCATTACGGACAAGTGTTCCTTCG
ACGAGTGCAGTCGCCTAAAGTTCCTCATCAATTACAATAAACGAAGACGC
AAGTTGGGCTCGGCCAGTAAAGAATACGCACTGGATATTCCTGTCATACT
GGTGGGCAATAAGACAGATCAGCCGGGCGATCGAATGGTCAGCTTGGAAG
AGGGTCAGCGCCGATTCAGGGAGTTATCCTGCTCCTGTTTTCACGAGATT
TCCGTCAGAGAGAGCGTGGATCAAGTGCAGAATGTTTTTCGCGATGTGTT
TCGCTTCTGGCGAGTCTTCAGCAAATTCCCCAAGCTCAAGCGCTCCACCA
GCGATGTGGCCAATACGGATGGAATCCTCACGCCCGATTCGGGATCCTGT
TCCTTCTACGATGCCTCGTCTTTGGGCGTCGGTCGACATTCCTTTCTGGT
CATCGGAAGCGCCTGTTTGGAGGAGAGCAACGGTGACCATACGGAGTCTA
CGGATGAGATTACGAGTACCAGTTTGAGCAGCTCACGCAGCGACATCGAT
GCTCCCTTCCGTAGTAGAACTTCGACGGACGGCA
BO12234.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5160-PA | 987 | CG5160-RA | 1..868 | 17..884 | 4290 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:54:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5160-RB | 1173 | CG5160-RB | 95..963 | 16..884 | 4315 | 99.8 | Plus |
| CG5160-RA | 1613 | CG5160-RA | 535..1403 | 16..884 | 4315 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:54:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7391194..7391503 | 884..575 | 1520 | 99.4 | Minus |
| 2L | 23513712 | 2L | 7391860..7392019 | 422..263 | 800 | 100 | Minus |
| 2L | 23513712 | 2L | 7391644..7391798 | 576..422 | 775 | 100 | Minus |
| 2L | 23513712 | 2L | 7392075..7392213 | 263..125 | 695 | 100 | Minus |
| 2L | 23513712 | 2L | 7392274..7392383 | 125..16 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:54:30 has no hits.
BO12234.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:07 Download gff for
BO12234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5160-PA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:28 Download gff for
BO12234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5160-PA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:03:34 Download gff for
BO12234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5160-RA | 526..1402 | 4..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:19:49 Download gff for
BO12234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5160-RA | 526..1402 | 4..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:19:49 Download gff for
BO12234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7391195..7391503 | 575..883 | 99 | <- | Minus |
| 2L | 7391646..7391798 | 422..574 | 100 | <- | Minus |
| 2L | 7391861..7392019 | 263..421 | 100 | <- | Minus |
| 2L | 7392076..7392212 | 126..262 | 100 | <- | Minus |
| 2L | 7392274..7392392 | 4..125 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:03:34 Download gff for
BO12234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7391195..7391503 | 575..883 | 99 | <- | Minus |
| arm_2L | 7391646..7391798 | 422..574 | 100 | <- | Minus |
| arm_2L | 7391861..7392019 | 263..421 | 100 | <- | Minus |
| arm_2L | 7392076..7392212 | 126..262 | 100 | <- | Minus |
| arm_2L | 7392274..7392392 | 4..125 | 96 | | Minus |
BO12234.complete Sequence
1018 bp assembled on 2006-10-11
GenBank Submission: FJ638695
> BO12234.complete
GAAGTTATCAGTCGACATGAATGCCACCTCGCCAAAGTCATCGCTGGTCA
AGTTGGGTCTGCATACCAATAAACAAAAGACTCTGAAGGTTATGGTCCTG
GGCCAAAGTGGTGTGGGAAAAACGGCCATGGTGGTGCGTTTTATTACCCG
ACGCTTCATTGGCGAGTATGATCCTAATCTGGAGAAGATTTACACCTGCC
AAACCACGCTGGACAAGGAGCAGATTCAGTTTGACATTCTGGACGCCACC
GGTCAGCTACAAGAACTAGATGGAGTTAGTCTGGAGTCCAACATCCGCTG
GGCCGACGCATTTATACTAATGTACTCCATTACGGACAAGTGTTCCTTCG
ACGAGTGCAGTCGCCTAAAGTTCCTCATCAATTACAATAAACGAAGACGC
AAGTTGGGCTCGGCCAGTAAAGAATACGCACTGGATATTCCTGTCATACT
GGTGGGCAATAAGACAGATCAGCCGGGCGATCGAATGGTCAGCTTGGAAG
AGGGTCAGCGCCGATTCAGGGAGTTATCCTGCTCCTGTTTTCACGAGATT
TCCGTCAGAGAGAGCGTGGATCAAGTGCAGAATGTTTTTCGCGATGTGTT
TCGCTTCTGGCGAGTCTTCAGCAAATTCCCCAAGCTCAAGCGCTCCACCA
GCGATGTGGCCAATACGGATGGAATCCTCACGCCCGATTCGGGATCCTGT
TCCTTCTACGATGCCTCGTCTTTGGGCGTCGGTCGACATTCCTTTCTGGT
CATCGGAAGCGCCTGTTTGGAGGAGAGCAACGGTGACCATACGGAGTCTA
CGGATGAGATTACGAGTAGCAGTTTGAGCAGCTCACGCAGCGACATCGAT
GCTCCCTTCCGTAGTAGAGCTTCGACGGACGGCACCCTGTTGTCCCGACC
ACGTAGATGGCGGTATCCACCGCCGGGATGCCTGCTGCCACACACGAATC
GCGTGGAGCGACGGATGAGCATTTCCACCAGGGGCAGTAATGCCAGTTAC
GCAAGCTTTCTAGACCAT
BO12234.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:03:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5160-RB | 987 | CG5160-PB | 1..984 | 17..1000 | 4920 | 100 | Plus |
| CG5160-RA | 987 | CG5160-PA | 1..984 | 17..1000 | 4920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:03:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5160-RB | 1173 | CG5160-RB | 95..1079 | 16..1000 | 4925 | 100 | Plus |
| CG5160-RA | 1613 | CG5160-RA | 535..1519 | 16..1000 | 4925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:03:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7391078..7391503 | 1000..575 | 2130 | 100 | Minus |
| 2L | 23513712 | 2L | 7391860..7392019 | 422..263 | 800 | 100 | Minus |
| 2L | 23513712 | 2L | 7391644..7391798 | 576..422 | 775 | 100 | Minus |
| 2L | 23513712 | 2L | 7392075..7392213 | 263..125 | 695 | 100 | Minus |
| 2L | 23513712 | 2L | 7392274..7392383 | 125..16 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:03:05 has no hits.
BO12234.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:48 Download gff for
BO12234.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5160-RA | 1..987 | 17..1001 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:48:02 Download gff for
BO12234.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5160-RA | 189..1172 | 17..1002 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:37 Download gff for
BO12234.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5160-RA | 536..1519 | 17..1002 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:48 Download gff for
BO12234.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5160-RA | 179..1172 | 4..1000 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:09:49 Download gff for
BO12234.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5160-RA | 536..1519 | 17..1002 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:09:49 Download gff for
BO12234.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7392076..7392212 | 126..262 | 100 | <- | Minus |
| 2L | 7391076..7391503 | 575..1002 | 99 | <- | Minus |
| 2L | 7391646..7391798 | 422..574 | 100 | <- | Minus |
| 2L | 7391861..7392019 | 263..421 | 100 | <- | Minus |
| 2L | 7392274..7392382 | 17..125 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:37 Download gff for
BO12234.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7391076..7391503 | 575..1002 | 99 | <- | Minus |
| arm_2L | 7391646..7391798 | 422..574 | 100 | <- | Minus |
| arm_2L | 7391861..7392019 | 263..421 | 100 | <- | Minus |
| arm_2L | 7392076..7392212 | 126..262 | 100 | <- | Minus |
| arm_2L | 7392274..7392382 | 17..125 | 100 | | Minus |
BO12234.pep Sequence
Translation from 16 to 1018
> BO12234.pep
MNATSPKSSLVKLGLHTNKQKTLKVMVLGQSGVGKTAMVVRFITRRFIGE
YDPNLEKIYTCQTTLDKEQIQFDILDATGQLQELDGVSLESNIRWADAFI
LMYSITDKCSFDECSRLKFLINYNKRRRKLGSASKEYALDIPVILVGNKT
DQPGDRMVSLEEGQRRFRELSCSCFHEISVRESVDQVQNVFRDVFRFWRV
FSKFPKLKRSTSDVANTDGILTPDSGSCSFYDASSLGVGRHSFLVIGSAC
LEESNGDHTESTDEITSSSLSSSRSDIDAPFRSRASTDGTLLSRPRRWRY
PPPGCLLPHTNRVERRMSISTRGSNASYASFLDH
BO12234.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5160-PB | 328 | CG5160-PB | 1..328 | 1..328 | 1694 | 100 | Plus |
| CG5160-PA | 328 | CG5160-PA | 1..328 | 1..328 | 1694 | 100 | Plus |
| CG8519-PA | 207 | CG8519-PA | 16..169 | 23..194 | 264 | 36.6 | Plus |
| Ric-PB | 264 | CG8418-PB | 58..211 | 21..186 | 237 | 32.3 | Plus |
| Ric-PA | 264 | CG8418-PA | 58..211 | 21..186 | 237 | 32.3 | Plus |
