Clone Sequence Records
BO12237.3prime Sequence
873 bp (769 high quality bases) assembled on 2006-04-20
> BO12237.3prime
ATGGTCTAGAAAGCTTGCATCTCGATAGGCTAGCGACTTGTAGCTATCTG
AGGTGAGGTTGCAGGGACGACGGAACTCCTGGTATCCCGAGTGCATCCAG
ATGTTGCCAATCCGCTTGGAACCCACGATAACTGGACAGCCAGCATGCAA
AGTGCGAGCATCCACATGCAGGGATCGATGAAGATTGTGCCACATGACCA
GAGCTCCTTTGACAGGAGGCAGGAACACATTAAGCTTGGTGAAGACAGTA
TAACCTCCTTGTTCCACATCAGAAAGATAAAACATGCTGGTGGAGATGCG
ATCTCCTTCGAAGTTCTTCGGCAGATTGACCTCAAAGTAATCCGGATGCG
GCTCGTACTGCCCTCCAACTCCGTAGTTGGCCACCTGCATATGCTCCGCT
CCGGCCATATCGAATCCAGATACAAACTGGATGATCCGACCTACGGAATT
CATCACCGGGGACTTGTAGTCGAGCCAGGTTTGCTGACTGACCCGCAAGT
CCCTCACGGTGCCTTCTCCACCACTTCCGGCCACAGCGGACCTAACCATC
TCCTCCTTGTCCGCTTCCTCGAAGATGGACAAAATCTGTTTGGAGCTCAG
CATTCCGTGATAAACATTTATATCCGGATCCAAGTGTACCGGTTCCACTT
GAAGTGGAGCCAAGGTGAAGTAAGCATGGCGTTTTCCATCCAGGTAGCAT
CTTAAGGGATCACCACTTCGCTCTTCGGGCAATCTTCTGCCCTGGCATAA
CCTAGTATAGTTGGAAAACCAAGAGGGTTTCGTCTCCTGGACATTCTTTC
CTGGCACCCTGCTCTCCAGATACTTTTGAGTTTGCTGGGCGGAATGTGTT
GGTTGCGATTCAAGGATCTGACT
BO12237.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1546-PA | 1584 | PH4alphaSG2-RA | 727..1581 | 873..19 | 4275 | 100 | Minus |
CG1546-PB | 906 | PH4alphaSG2-RB | 49..903 | 873..19 | 4275 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:17:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PH4alphaSG2-RA | 1683 | CG1546-RA | 793..1647 | 873..19 | 4275 | 100 | Minus |
PH4alphaMP-RA | 1882 | CG9726-RA | 1744..1835 | 19..110 | 460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:17:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30490973..30491569 | 873..277 | 2985 | 100 | Minus |
3R | 32079331 | 3R | 30491626..30491791 | 276..111 | 830 | 100 | Minus |
3R | 32079331 | 3R | 30491860..30491951 | 110..19 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:17:18 has no hits.
BO12237.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:11 Download gff for
BO12237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1546-PB | 49..906 | 18..873 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:32 Download gff for
BO12237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1546-PB | 49..906 | 18..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:53:45 Download gff for
BO12237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaSG2-RA | 793..1647 | 19..873 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:58:01 Download gff for
BO12237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaSG2-RA | 793..1647 | 19..873 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:58:01 Download gff for
BO12237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30490973..30491569 | 277..873 | 100 | -> | Minus |
3R | 30491626..30491791 | 111..276 | 100 | -> | Minus |
3R | 30491860..30491951 | 19..110 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:53:45 Download gff for
BO12237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26316695..26317291 | 277..873 | 100 | -> | Minus |
arm_3R | 26317348..26317513 | 111..276 | 100 | -> | Minus |
arm_3R | 26317582..26317673 | 19..110 | 100 | | Minus |
BO12237.5prime Sequence
868 bp (826 high quality bases) assembled on 2006-04-20
> BO12237.5prime
GAAGTTATCAGTCGACATGGCTAATTTTGAGTTGGGCAATCCAAAGAAAG
CCGCAAGACTACTGAGTCAGATCCTTGAATCGCAACCAACACATTCCGCC
CAGCAAACTCAAAAGTATCTGGAGAGCAGGGTGCCAGGAAAGAATGTCCA
GGAGACGAAACCCTCTTGGTTTTCCAACTATACTAGGTTATGCCAGGGCA
GAAGATTGCCCGAAGAGCGAAGTGGTGATCCCTTAAGATGCTACCTGGAT
GGAAAACGCCATGCTTACTTCACCTTGGCTCCACTTCAAGTGGAACCGGT
ACACTTGGATCCGGATATAAATGTTTATCACGGAATGCTGAGCTCCAAAC
AGATTTTGTCCATCTTCGAGGAAGCGGACAAGGAGGAGATGGTTAGGTCC
GCTGTGGCCGGAAGTGGTGGAGAAGGCACCGTGAGGGACTTGCGGGTCAG
TCAGCAAACCTGGCTCGACTACAAGTCCCCGGTGATGAATTCCGTAGGTC
GGATCATCCAGTTTGTATCTGGATTCGATATGGCCGGAGCGGAGCATATG
CAGGTGGCCAACTACGGAGTTGGAGGGCAGTACGAGCCGCATCCGGATTA
CTTTGAGGTCAATCTGCCGAAGAACTTCGAAGGAGATCGCATCTCCACCA
GCATGTTTTATCTTTCTGATGTGGAACAAGGAGGTTATACTGTCTTCACC
AAGCTTAATGTGTTCCTGCCTCCTGTCAAAGGAGCTCTGGTCATGTGGCA
CAATCTTCATCGATCCCTGCATGTGGATGCTCGCACTTTGCATGCTGGCT
GTCCAGTTATCGTGGGTTCCAAGCGGATTGACAACATCTGGATGCACTCG
GGATACCAGGAGTTCCGT
BO12237.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1546-PA | 1584 | PH4alphaSG2-RA | 678..1530 | 16..868 | 4240 | 99.8 | Plus |
CG1546-PB | 906 | PH4alphaSG2-RB | 1..852 | 17..868 | 4235 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:53:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PH4alphaSG2-RA | 1683 | CG1546-RA | 744..1596 | 16..868 | 4250 | 99.9 | Plus |
PH4alphaMP-RA | 1882 | CG9726-RA | 1795..1835 | 868..828 | 190 | 97.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:53:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30490924..30491569 | 16..661 | 3230 | 100 | Plus |
3R | 32079331 | 3R | 30491626..30491791 | 662..827 | 830 | 100 | Plus |
3R | 32079331 | 3R | 30491860..30491900 | 828..868 | 190 | 97.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:53:22 has no hits.
BO12237.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:12 Download gff for
BO12237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1546-PA | 668..1530 | 3..868 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:33 Download gff for
BO12237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1546-PA | 668..1530 | 3..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:03:18 Download gff for
BO12237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaSG2-RA | 734..1596 | 3..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:16:00 Download gff for
BO12237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaSG2-RA | 734..1596 | 3..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:16:00 Download gff for
BO12237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30490914..30491569 | 3..661 | 99 | -> | Plus |
3R | 30491626..30491791 | 662..827 | 100 | -> | Plus |
3R | 30491860..30491900 | 828..868 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:03:18 Download gff for
BO12237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26317348..26317513 | 662..827 | 100 | -> | Plus |
arm_3R | 26317582..26317622 | 828..868 | 97 | | Plus |
arm_3R | 26316636..26317291 | 3..661 | 99 | -> | Plus |
BO12237.complete Sequence
937 bp assembled on 2006-10-11
GenBank Submission: FJ632371
> BO12237.complete
GAAGTTATCAGTCGACATGGCTAATTTTGAGTTGGGCAATCCAAAGAAAG
CCGCAAGACTACTGAGTCAGATCCTTGAATCGCAACCAACACATTCCGCC
CAGCAAACTCAAAAGTATCTGGAGAGCAGGGTGCCAGGAAAGAATGTCCA
GGAGACGAAACCCTCTTGGTTTTCCAACTATACTAGGTTATGCCAGGGCA
GAAGATTGCCCGAAGAGCGAAGTGGTGATCCCTTAAGATGCTACCTGGAT
GGAAAACGCCATGCTTACTTCACCTTGGCTCCACTTCAAGTGGAACCGGT
ACACTTGGATCCGGATATAAATGTTTATCACGGAATGCTGAGCTCCAAAC
AGATTTTGTCCATCTTCGAGGAAGCGGACAAGGAGGAGATGGTTAGGTCC
GCTGTGGCCGGAAGTGGTGGAGAAGGCACCGTGAGGGACTTGCGGGTCAG
TCAGCAAACCTGGCTCGACTACAAGTCCCCGGTGATGAATTCCGTAGGTC
GGATCATCCAGTTTGTATCTGGATTCGATATGGCCGGAGCGGAGCATATG
CAGGTGGCCAACTACGGAGTTGGAGGGCAGTACGAGCCGCATCCGGATTA
CTTTGAGGTCAATCTGCCGAAGAACTTCGAAGGAGATCGCATCTCCACCA
GCATGTTTTATCTTTCTGATGTGGAACAAGGAGGTTATACTGTCTTCACC
AAGCTTAATGTGTTCCTGCCTCCTGTCAAAGGAGCTCTGGTCATGTGGCA
CAATCTTCATCGATCCCTGCATGTGGATGCTCGCACTTTGCATGCTGGCT
GTCCAGTTATCGTGGGTTCCAAGCGGATTGGCAACATCTGGATGCACTCG
GGATACCAGGAGTTCCGTCGTCCCTGCAACCTCACCTCAGATAGCTACAA
GTCGCTAGCCTATCGAGATGCAAGCTTTCTAGACCAT
BO12237.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:53:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PH4alphaSG2-RA | 1584 | CG1546-PA | 678..1581 | 16..919 | 4520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:53:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PH4alphaSG2-RA | 1683 | CG1546-RA | 744..1647 | 16..919 | 4520 | 100 | Plus |
PH4alphaMP-RA | 1882 | CG9726-RA | 1744..1835 | 919..828 | 460 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:53:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30490924..30491569 | 16..661 | 3230 | 100 | Plus |
3R | 32079331 | 3R | 30491626..30491791 | 662..827 | 830 | 100 | Plus |
3R | 32079331 | 3R | 30491860..30491951 | 828..919 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:53:42 has no hits.
BO12237.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:49 Download gff for
BO12237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaSG2-RA | 668..1584 | 3..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:22 Download gff for
BO12237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaSG2-RB | 784..1697 | 3..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:50 Download gff for
BO12237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaSG2-RA | 745..1647 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:50 Download gff for
BO12237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaSG2-RB | 784..1697 | 3..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:35 Download gff for
BO12237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaSG2-RA | 745..1647 | 17..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:35 Download gff for
BO12237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30490925..30491569 | 17..661 | 100 | -> | Plus |
3R | 30491626..30491791 | 662..827 | 100 | -> | Plus |
3R | 30491860..30491951 | 828..921 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:50 Download gff for
BO12237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26316647..26317291 | 17..661 | 100 | -> | Plus |
arm_3R | 26317348..26317513 | 662..827 | 100 | -> | Plus |
arm_3R | 26317582..26317673 | 828..921 | 97 | | Plus |
BO12237.pep Sequence
Translation from 16 to 937
> BO12237.pep
MANFELGNPKKAARLLSQILESQPTHSAQQTQKYLESRVPGKNVQETKPS
WFSNYTRLCQGRRLPEERSGDPLRCYLDGKRHAYFTLAPLQVEPVHLDPD
INVYHGMLSSKQILSIFEEADKEEMVRSAVAGSGGEGTVRDLRVSQQTWL
DYKSPVMNSVGRIIQFVSGFDMAGAEHMQVANYGVGGQYEPHPDYFEVNL
PKNFEGDRISTSMFYLSDVEQGGYTVFTKLNVFLPPVKGALVMWHNLHRS
LHVDARTLHAGCPVIVGSKRIGNIWMHSGYQEFRRPCNLTSDSYKSLAYR
DASFLDH
BO12237.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:17:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PH4alphaSG2-PA | 527 | CG1546-PA | 227..527 | 1..301 | 1603 | 100 | Plus |
PH4alphaSG1-PA | 540 | CG31014-PA | 229..539 | 6..301 | 542 | 40.1 | Plus |
PH4alphaNE1-PA | 537 | CG9728-PA | 286..533 | 52..299 | 485 | 44.6 | Plus |
PH4alphaEFB-PA | 550 | CG31022-PA | 252..544 | 7..292 | 454 | 36.7 | Plus |
PH4alphaMP-PA | 535 | CG9726-PA | 240..533 | 9..301 | 421 | 36.9 | Plus |