Clone BO12237 Report

Search the DGRC for BO12237

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:122
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptPH4alphaSG2-RB
Protein status:BO12237.pep: validated not full length
Sequenced Size:937

Clone Sequence Records

BO12237.3prime Sequence

873 bp (769 high quality bases) assembled on 2006-04-20

> BO12237.3prime
ATGGTCTAGAAAGCTTGCATCTCGATAGGCTAGCGACTTGTAGCTATCTG
AGGTGAGGTTGCAGGGACGACGGAACTCCTGGTATCCCGAGTGCATCCAG
ATGTTGCCAATCCGCTTGGAACCCACGATAACTGGACAGCCAGCATGCAA
AGTGCGAGCATCCACATGCAGGGATCGATGAAGATTGTGCCACATGACCA
GAGCTCCTTTGACAGGAGGCAGGAACACATTAAGCTTGGTGAAGACAGTA
TAACCTCCTTGTTCCACATCAGAAAGATAAAACATGCTGGTGGAGATGCG
ATCTCCTTCGAAGTTCTTCGGCAGATTGACCTCAAAGTAATCCGGATGCG
GCTCGTACTGCCCTCCAACTCCGTAGTTGGCCACCTGCATATGCTCCGCT
CCGGCCATATCGAATCCAGATACAAACTGGATGATCCGACCTACGGAATT
CATCACCGGGGACTTGTAGTCGAGCCAGGTTTGCTGACTGACCCGCAAGT
CCCTCACGGTGCCTTCTCCACCACTTCCGGCCACAGCGGACCTAACCATC
TCCTCCTTGTCCGCTTCCTCGAAGATGGACAAAATCTGTTTGGAGCTCAG
CATTCCGTGATAAACATTTATATCCGGATCCAAGTGTACCGGTTCCACTT
GAAGTGGAGCCAAGGTGAAGTAAGCATGGCGTTTTCCATCCAGGTAGCAT
CTTAAGGGATCACCACTTCGCTCTTCGGGCAATCTTCTGCCCTGGCATAA
CCTAGTATAGTTGGAAAACCAAGAGGGTTTCGTCTCCTGGACATTCTTTC
CTGGCACCCTGCTCTCCAGATACTTTTGAGTTTGCTGGGCGGAATGTGTT
GGTTGCGATTCAAGGATCTGACT

BO12237.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG1546-PA 1584 PH4alphaSG2-RA 727..1581 873..19 4275 100 Minus
CG1546-PB 906 PH4alphaSG2-RB 49..903 873..19 4275 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:17:20
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaSG2-RA 1683 CG1546-RA 793..1647 873..19 4275 100 Minus
PH4alphaMP-RA 1882 CG9726-RA 1744..1835 19..110 460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:17:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30490973..30491569 873..277 2985 100 Minus
3R 32079331 3R 30491626..30491791 276..111 830 100 Minus
3R 32079331 3R 30491860..30491951 110..19 460 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:17:18 has no hits.

BO12237.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:11 Download gff for BO12237.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1546-PB 49..906 18..873 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:32 Download gff for BO12237.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1546-PB 49..906 18..873 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:53:45 Download gff for BO12237.3prime
Subject Subject Range Query Range Percent Splice Strand
PH4alphaSG2-RA 793..1647 19..873 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:58:01 Download gff for BO12237.3prime
Subject Subject Range Query Range Percent Splice Strand
PH4alphaSG2-RA 793..1647 19..873 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:58:01 Download gff for BO12237.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30490973..30491569 277..873 100 -> Minus
3R 30491626..30491791 111..276 100 -> Minus
3R 30491860..30491951 19..110 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:53:45 Download gff for BO12237.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26316695..26317291 277..873 100 -> Minus
arm_3R 26317348..26317513 111..276 100 -> Minus
arm_3R 26317582..26317673 19..110 100   Minus

BO12237.5prime Sequence

868 bp (826 high quality bases) assembled on 2006-04-20

> BO12237.5prime
GAAGTTATCAGTCGACATGGCTAATTTTGAGTTGGGCAATCCAAAGAAAG
CCGCAAGACTACTGAGTCAGATCCTTGAATCGCAACCAACACATTCCGCC
CAGCAAACTCAAAAGTATCTGGAGAGCAGGGTGCCAGGAAAGAATGTCCA
GGAGACGAAACCCTCTTGGTTTTCCAACTATACTAGGTTATGCCAGGGCA
GAAGATTGCCCGAAGAGCGAAGTGGTGATCCCTTAAGATGCTACCTGGAT
GGAAAACGCCATGCTTACTTCACCTTGGCTCCACTTCAAGTGGAACCGGT
ACACTTGGATCCGGATATAAATGTTTATCACGGAATGCTGAGCTCCAAAC
AGATTTTGTCCATCTTCGAGGAAGCGGACAAGGAGGAGATGGTTAGGTCC
GCTGTGGCCGGAAGTGGTGGAGAAGGCACCGTGAGGGACTTGCGGGTCAG
TCAGCAAACCTGGCTCGACTACAAGTCCCCGGTGATGAATTCCGTAGGTC
GGATCATCCAGTTTGTATCTGGATTCGATATGGCCGGAGCGGAGCATATG
CAGGTGGCCAACTACGGAGTTGGAGGGCAGTACGAGCCGCATCCGGATTA
CTTTGAGGTCAATCTGCCGAAGAACTTCGAAGGAGATCGCATCTCCACCA
GCATGTTTTATCTTTCTGATGTGGAACAAGGAGGTTATACTGTCTTCACC
AAGCTTAATGTGTTCCTGCCTCCTGTCAAAGGAGCTCTGGTCATGTGGCA
CAATCTTCATCGATCCCTGCATGTGGATGCTCGCACTTTGCATGCTGGCT
GTCCAGTTATCGTGGGTTCCAAGCGGATTGACAACATCTGGATGCACTCG
GGATACCAGGAGTTCCGT

BO12237.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1546-PA 1584 PH4alphaSG2-RA 678..1530 16..868 4240 99.8 Plus
CG1546-PB 906 PH4alphaSG2-RB 1..852 17..868 4235 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaSG2-RA 1683 CG1546-RA 744..1596 16..868 4250 99.9 Plus
PH4alphaMP-RA 1882 CG9726-RA 1795..1835 868..828 190 97.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:53:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30490924..30491569 16..661 3230 100 Plus
3R 32079331 3R 30491626..30491791 662..827 830 100 Plus
3R 32079331 3R 30491860..30491900 828..868 190 97.6 Plus
Blast to na_te.dros performed on 2015-02-10 22:53:22 has no hits.

BO12237.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:12 Download gff for BO12237.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1546-PA 668..1530 3..868 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:33 Download gff for BO12237.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1546-PA 668..1530 3..868 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:03:18 Download gff for BO12237.5prime
Subject Subject Range Query Range Percent Splice Strand
PH4alphaSG2-RA 734..1596 3..868 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:16:00 Download gff for BO12237.5prime
Subject Subject Range Query Range Percent Splice Strand
PH4alphaSG2-RA 734..1596 3..868 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:16:00 Download gff for BO12237.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30490914..30491569 3..661 99 -> Plus
3R 30491626..30491791 662..827 100 -> Plus
3R 30491860..30491900 828..868 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:03:18 Download gff for BO12237.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26317348..26317513 662..827 100 -> Plus
arm_3R 26317582..26317622 828..868 97   Plus
arm_3R 26316636..26317291 3..661 99 -> Plus

BO12237.complete Sequence

937 bp assembled on 2006-10-11

GenBank Submission: FJ632371

> BO12237.complete
GAAGTTATCAGTCGACATGGCTAATTTTGAGTTGGGCAATCCAAAGAAAG
CCGCAAGACTACTGAGTCAGATCCTTGAATCGCAACCAACACATTCCGCC
CAGCAAACTCAAAAGTATCTGGAGAGCAGGGTGCCAGGAAAGAATGTCCA
GGAGACGAAACCCTCTTGGTTTTCCAACTATACTAGGTTATGCCAGGGCA
GAAGATTGCCCGAAGAGCGAAGTGGTGATCCCTTAAGATGCTACCTGGAT
GGAAAACGCCATGCTTACTTCACCTTGGCTCCACTTCAAGTGGAACCGGT
ACACTTGGATCCGGATATAAATGTTTATCACGGAATGCTGAGCTCCAAAC
AGATTTTGTCCATCTTCGAGGAAGCGGACAAGGAGGAGATGGTTAGGTCC
GCTGTGGCCGGAAGTGGTGGAGAAGGCACCGTGAGGGACTTGCGGGTCAG
TCAGCAAACCTGGCTCGACTACAAGTCCCCGGTGATGAATTCCGTAGGTC
GGATCATCCAGTTTGTATCTGGATTCGATATGGCCGGAGCGGAGCATATG
CAGGTGGCCAACTACGGAGTTGGAGGGCAGTACGAGCCGCATCCGGATTA
CTTTGAGGTCAATCTGCCGAAGAACTTCGAAGGAGATCGCATCTCCACCA
GCATGTTTTATCTTTCTGATGTGGAACAAGGAGGTTATACTGTCTTCACC
AAGCTTAATGTGTTCCTGCCTCCTGTCAAAGGAGCTCTGGTCATGTGGCA
CAATCTTCATCGATCCCTGCATGTGGATGCTCGCACTTTGCATGCTGGCT
GTCCAGTTATCGTGGGTTCCAAGCGGATTGGCAACATCTGGATGCACTCG
GGATACCAGGAGTTCCGTCGTCCCTGCAACCTCACCTCAGATAGCTACAA
GTCGCTAGCCTATCGAGATGCAAGCTTTCTAGACCAT

BO12237.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:53:43
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaSG2-RA 1584 CG1546-PA 678..1581 16..919 4520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:53:45
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaSG2-RA 1683 CG1546-RA 744..1647 16..919 4520 100 Plus
PH4alphaMP-RA 1882 CG9726-RA 1744..1835 919..828 460 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:53:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30490924..30491569 16..661 3230 100 Plus
3R 32079331 3R 30491626..30491791 662..827 830 100 Plus
3R 32079331 3R 30491860..30491951 828..919 460 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:53:42 has no hits.

BO12237.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:49 Download gff for BO12237.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaSG2-RA 668..1584 3..920 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:22 Download gff for BO12237.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaSG2-RB 784..1697 3..919 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:50 Download gff for BO12237.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaSG2-RA 745..1647 17..921 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:50 Download gff for BO12237.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaSG2-RB 784..1697 3..919 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:35 Download gff for BO12237.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaSG2-RA 745..1647 17..921 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:35 Download gff for BO12237.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30490925..30491569 17..661 100 -> Plus
3R 30491626..30491791 662..827 100 -> Plus
3R 30491860..30491951 828..921 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:50 Download gff for BO12237.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26316647..26317291 17..661 100 -> Plus
arm_3R 26317348..26317513 662..827 100 -> Plus
arm_3R 26317582..26317673 828..921 97   Plus

BO12237.pep Sequence

Translation from 16 to 937

> BO12237.pep
MANFELGNPKKAARLLSQILESQPTHSAQQTQKYLESRVPGKNVQETKPS
WFSNYTRLCQGRRLPEERSGDPLRCYLDGKRHAYFTLAPLQVEPVHLDPD
INVYHGMLSSKQILSIFEEADKEEMVRSAVAGSGGEGTVRDLRVSQQTWL
DYKSPVMNSVGRIIQFVSGFDMAGAEHMQVANYGVGGQYEPHPDYFEVNL
PKNFEGDRISTSMFYLSDVEQGGYTVFTKLNVFLPPVKGALVMWHNLHRS
LHVDARTLHAGCPVIVGSKRIGNIWMHSGYQEFRRPCNLTSDSYKSLAYR
DASFLDH

BO12237.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaSG2-PA 527 CG1546-PA 227..527 1..301 1603 100 Plus
PH4alphaSG1-PA 540 CG31014-PA 229..539 6..301 542 40.1 Plus
PH4alphaNE1-PA 537 CG9728-PA 286..533 52..299 485 44.6 Plus
PH4alphaEFB-PA 550 CG31022-PA 252..544 7..292 454 36.7 Plus
PH4alphaMP-PA 535 CG9726-PA 240..533 9..301 421 36.9 Plus