Clone Sequence Records
BO12238.3prime Sequence
552 bp (465 high quality bases) assembled on 2006-04-20
> BO12238.3prime
ATGGTCTAGAAAGCTTGCCTTGGTCGGCTGCTTCGCTTGCTTCTCCTTCT
TGGCAGCCTCGGCCTCCGCCTGTACCTTTGTGTACTTCTCGATCAGCTTC
TCCACATCGGGTTTCTCCAGGACACTGTATACGGTCTTATTGTCCACACG
CTGCAGCGTGGCCATCTCGACCTTCTCCGGGGTCAGCTTGGTGGTGTCCA
GGGTCATGCTCAGTACCTTGATGGCCAAATCCTTGGCGTCCGCCAGCGTC
AGCTTCACGTTCTCCTTATCGGCCAGCTCCTGCTTCAGCATGGAGATCGC
GGCACCGAAGTTGTTGCCAATACAGGTGGCCTTCCATCCGCCGTAGTTGC
CGCTGGGATCCGACTGGTACAGTTGGTAGCCGTACTTGTTGTCCCATCCC
ATGTAGAGCAGCGAGACGCCGAAGGGACGCTTTCCGCCGTACTGAGTGTA
CGCCTGTTTGATGTCGCAAAGGTGCGACACCAGCTGCTCGCAAGGAATCA
CCTCGCCGTAACTGAACTGGTAACGCTGGGCAATCAGACGCAGTTCTGAA
GT
BO12238.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9327-PA | 795 | Pros29-RA | 262..792 | 549..19 | 2580 | 99.4 | Minus |
| CG1736-PA | 756 | Prosalpha3T-RA | 308..359 | 500..449 | 135 | 90.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:48:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha3-RA | 973 | CG9327-RA | 353..883 | 549..19 | 2610 | 99.4 | Minus |
| Prosalpha3T-RA | 889 | CG1736-RA | 297..526 | 545..316 | 385 | 77.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:48:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20995498..20996028 | 549..19 | 2610 | 99.4 | Minus |
| 3R | 32079331 | 3R | 31122890..31123119 | 316..545 | 385 | 77.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:48:12 has no hits.
BO12238.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:13 Download gff for
BO12238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9327-PA | 259..795 | 15..552 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:34 Download gff for
BO12238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9327-PA | 259..795 | 15..552 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:48:47 Download gff for
BO12238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha3-RA | 350..886 | 15..552 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:01:20 Download gff for
BO12238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha3-RA | 350..886 | 15..552 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:20 Download gff for
BO12238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20995495..20996031 | 15..552 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:48:47 Download gff for
BO12238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16883000..16883536 | 15..552 | 98 | | Minus |
BO12238.5prime Sequence
824 bp (820 high quality bases) assembled on 2006-04-20
> BO12238.5prime
GAAGTTATCAGTCGACATGGCTCGCCGCTATGATTCCCGCACCACGATCT
TCTCGCCGGAGGGCCGTTTGTACCAGGTGGAGTACGCCATGGAGGCCATC
TCGCACGCCGGAACCTGCCTCGGAATCCTCGCCGAGGACGGCATCCTGTT
GGCAGCCGAGTGCCGCAGCACAAACAAATTGCTGGACAGCGCCATTCCTT
CGGAGAAGATCTATCGCCTGAACGACAACATGGTCTGCTCGGTGGCTGGC
ATCACCTCCGATGCCAATGTGCTGACCTCAGAACTGCGTCTGATTGCCCA
GCGTTACCAGTTCAGCTACGGCGAGGTGATTCCCTGCGAGCAGCTGGTGT
CGCACCTCTGCGACATCAAACAGGCGTACACTCAGTACGGCGGAAAGCGT
CCCTTCGGCGTCTCGCTGCTCTACATGGGATGGGACAACAAGTACGGCTA
CCAACTGTACCAGTCGGATCCCAGCGGCAACTACGGCGGATGGAAGGCCA
CCTGTATTGGCAACAACTTCGGTGCCGCGATCTCCATGCTGAAGCAGGAG
CTGGCCGATAAGGAGAACGTGAAGCTGACGCTGGCGGACGCCAAGGATTT
GGCCATCAAGGTACTGAGCATGACCCTGGACACCACCAAGCTGACCCCGG
AGAAGGTCGAGATGGCCACGCTGCAGCGTGTGGACAATAAGACCGTATAC
AGTGTCCTGGAGAAACCCGATGTGGAGAAGCTGATCGAGAAGTACACAAA
GGTACAGGCGGAGGCCGAGGCTGCCAAGAAGGAGAAGCAAGCGAAGCAGC
CGACCAAGGCAAGCTTTCTAGACC
BO12238.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9327-PA | 795 | Pros29-RA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:50:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha3-RA | 973 | CG9327-RA | 92..883 | 17..808 | 3960 | 100 | Plus |
| Prosalpha3T-RA | 889 | CG1736-RA | 50..526 | 32..511 | 395 | 72.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:50:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20995446..20996028 | 226..808 | 2915 | 100 | Plus |
| 2R | 25286936 | 2R | 20995102..20995308 | 19..225 | 1035 | 100 | Plus |
| 3R | 32079331 | 3R | 31122890..31123119 | 511..282 | 370 | 77.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:50:57 has no hits.
BO12238.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:14 Download gff for
BO12238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9327-PA | 1..795 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:36 Download gff for
BO12238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9327-PA | 1..795 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:04:55 Download gff for
BO12238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha3-RA | 88..886 | 10..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:39:44 Download gff for
BO12238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha3-RA | 88..886 | 10..812 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:39:44 Download gff for
BO12238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20995097..20995308 | 12..225 | 98 | -> | Plus |
| 2R | 20995446..20996031 | 226..812 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:04:55 Download gff for
BO12238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16882602..16882813 | 12..225 | 98 | -> | Plus |
| arm_2R | 16882951..16883536 | 226..812 | 99 | | Plus |
BO12238.complete Sequence
826 bp assembled on 2006-10-11
GenBank Submission: FJ632372
> BO12238.complete
GAAGTTATCAGTCGACATGGCTCGCCGCTATGATTCCCGCACCACGATCT
TCTCGCCGGAGGGCCGTTTGTACCAGGTGGAGTACGCCATGGAGGCCATC
TCGCACGCCGGAACCTGCCTCGGAATCCTCGCCGAGGACGGCATCCTGTT
GGCAGCCGAGTGCCGCAGCACAAACAAATTGCTGGACAGCGCCATTCCTT
CGGAGAAGATCTATCGCCTGAACGACAACATGGTCTGCTCGGTGGCTGGC
ATCACCTCCGATGCCAATGTGCTGACCTCAGAACTGCGTCTGATTGCCCA
GCGTTACCAGTTCAGCTACGGCGAGGTGATTCCCTGCGAGCAGCTGGTGT
CGCACCTCTGCGACATCAAACAGGCGTACACTCAGTACGGCGGAAAGCGT
CCCTTCGGCGTCTCGCTGCTCTACATGGGATGGGACAACAAGTACGGCTA
CCAACTGTACCAGTCGGATCCCAGCGGCAACTACGGCGGATGGAAGGCCA
CCTGTATTGGCAACAACTTCGGTGCCGCGATCTCCATGCTGAAGCAGGAG
CTGGCCGATAAGGAGAACGTGAAGCTGACGCTGGCGGACGCCAAGGATTT
GGCCATCAAGGTACTGAGCATGACCCTGGACACCACCAAGCTGACCCCGG
AGAAGGTCGAGATGGCCACGCTGCAGCGTGTGGACAATAAGACCGTATAC
AGTGTCCTGGAGAAACCCGATGTGGAGAAGCTGATCGAGAAGTACACAAA
GGTACAGGCGGAGGCCGAGGCTGCCAAGAAGGAGAAGCAAGCGAAGCAGC
CGACCAAGGCAAGCTTTCTAGACCAT
BO12238.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:58:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha3-RA | 795 | CG9327-PA | 1..792 | 17..808 | 3960 | 100 | Plus |
| Prosalpha3T-RA | 756 | CG1736-PA | 263..492 | 282..511 | 370 | 77.4 | Plus |
| Prosalpha3T-RA | 756 | CG1736-PA | 16..137 | 32..153 | 235 | 79.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha3-RA | 973 | CG9327-RA | 92..883 | 17..808 | 3960 | 100 | Plus |
| Prosalpha3T-RA | 889 | CG1736-RA | 297..526 | 282..511 | 370 | 77.4 | Plus |
| Prosalpha3T-RA | 889 | CG1736-RA | 50..171 | 32..153 | 235 | 79.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20995446..20996028 | 226..808 | 2915 | 100 | Plus |
| 2R | 25286936 | 2R | 20995102..20995308 | 19..225 | 1035 | 100 | Plus |
| 3R | 32079331 | 3R | 31122890..31123119 | 511..282 | 370 | 77.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:58:15 has no hits.
BO12238.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:51 Download gff for
BO12238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pros29-RA | 1..795 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:24 Download gff for
BO12238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pros29-RA | 86..884 | 10..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:40:25 Download gff for
BO12238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha3-RA | 92..883 | 17..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:52 Download gff for
BO12238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pros29-RA | 86..884 | 10..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:15:03 Download gff for
BO12238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha3-RA | 92..883 | 17..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:15:03 Download gff for
BO12238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20995101..20995308 | 17..225 | 99 | -> | Plus |
| 2R | 20995446..20996028 | 226..810 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:40:25 Download gff for
BO12238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16882606..16882813 | 17..225 | 99 | -> | Plus |
| arm_2R | 16882951..16883533 | 226..810 | 99 | | Plus |
BO12238.pep Sequence
Translation from 16 to 826
> BO12238.pep
MARRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILAEDGILLAAECR
STNKLLDSAIPSEKIYRLNDNMVCSVAGITSDANVLTSELRLIAQRYQFS
YGEVIPCEQLVSHLCDIKQAYTQYGGKRPFGVSLLYMGWDNKYGYQLYQS
DPSGNYGGWKATCIGNNFGAAISMLKQELADKENVKLTLADAKDLAIKVL
SMTLDTTKLTPEKVEMATLQRVDNKTVYSVLEKPDVEKLIEKYTKVQAEA
EAAKKEKQAKQPTKASFLDH
BO12238.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha3-PA | 264 | CG9327-PA | 1..264 | 1..264 | 1354 | 100 | Plus |
| Prosalpha3T-PA | 251 | CG1736-PA | 1..241 | 1..242 | 829 | 64 | Plus |
| Prosalpha2-PA | 234 | CG5266-PA | 5..230 | 4..231 | 343 | 39.1 | Plus |
| Prosalpha4T2-PB | 252 | CG4569-PB | 1..250 | 1..257 | 335 | 30 | Plus |
| Prosalpha4T2-PA | 252 | CG4569-PA | 1..250 | 1..257 | 335 | 30 | Plus |
