Clone BO12239 Report

Search the DGRC for BO12239

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:122
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptCG13393-RA
Protein status:BO12239.pep:
Sequenced Size:370

Clone Sequence Records

BO12239.3prime Sequence

368 bp (367 high quality bases) assembled on 2006-04-20

> BO12239.3prime
ATGGTCTAGAAAGCTTGCACCGATGAAGTTCATGACCACCAGATGAAGGA
TCACATGAGCGAAGATGAAGTCGGCGAAACCGCGTTCCGGCGAAATGCCG
GCAAACACGCTCTTGTTCTGGGGATTGGCCTGCAGGCGTAGGCACACTGC
CAGGACGAAACAGCTGACGGTGCTGATGAAACCAGATAGGAAGGAGTTGA
ACGGGAAGGTTCCAACCAGGCAGCAGTAAACAAACTGGATGATGCCGGTG
AGCAGAATGTAGCCGAGGTAGATGTCCACCAGCTTCAGTTTCTTGGGCGT
ATTCTGCACGTAGTCGTTGTAGAACTTGGAAATGACGCTCGACAGCTCCA
CCATGTCGACTGATAACT

BO12239.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG13393-PA 339 CG13393-RA 1..336 354..19 1680 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:45:16
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k12914-RA 526 CG13393-RA 126..461 354..19 1680 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:45:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8383677..8384012 19..354 1680 100 Plus
Blast to na_te.dros performed on 2015-02-03 07:45:12 has no hits.

BO12239.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:15 Download gff for BO12239.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13393-PA 1..339 15..354 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:38 Download gff for BO12239.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13393-PA 1..339 15..354 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:33:59 Download gff for BO12239.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k12914-RA 118..464 15..364 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:48:54 Download gff for BO12239.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k12914-RA 118..464 15..364 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:48:54 Download gff for BO12239.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8383674..8384020 15..364 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:33:59 Download gff for BO12239.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8383674..8384020 15..364 98   Plus

BO12239.5prime Sequence

368 bp (367 high quality bases) assembled on 2006-04-20

> BO12239.5prime
GAAGTTATCAGTCGACATGGTGGAGCTGTCGAGCGTCATTTCCAAGTTCT
ACAACGACTACGTGCAGAATACGCCCAAGAAACTGAAGCTGGTGGACATC
TACCTCGGCTACATTCTGCTCACCGGCATCATCCAGTTTGTTTACTGCTG
CCTGGTTGGAACCTTCCCGTTCAACTCCTTCCTATCTGGTTTCATCAGCA
CCGTCAGCTGTTTCGTCCTGGCAGTGTGCCTACGCCTGCAGGCCAATCCC
CAGAACAAGAGCGTGTTTGCCGGCATTTCGCCGGAACGCGGTTTCGCCGA
CTTCATCTTCGCTCATGTGATCCTTCATCTGGTGGTCATGAACTTCATCG
GTGCAAGCTTTCTAGACC

BO12239.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG13393-PA 339 CG13393-RA 1..336 17..352 1680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k12914-RA 526 CG13393-RA 126..461 17..352 1680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8383677..8384012 352..17 1680 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:48:30 has no hits.

BO12239.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:16 Download gff for BO12239.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13393-PA 1..339 17..356 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:39 Download gff for BO12239.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13393-PA 1..339 17..356 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 15:28:53 Download gff for BO12239.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k12914-RA 118..464 7..356 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:23:00 Download gff for BO12239.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k12914-RA 118..464 7..356 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:23:00 Download gff for BO12239.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8383674..8384020 7..356 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 15:28:53 Download gff for BO12239.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8383674..8384020 7..356 98   Minus

BO12239.complete Sequence

370 bp assembled on 2007-06-22

GenBank Submission: FJ632373

> BO12239.complete
GAAGTTATCAGTCGACATGGTGGAGCTGTCGAGCGTCATTTCCAAGTTCT
ACAACGACTACGTGCAGAATACGCCCAAGAAACTGAAGCTGGTGGACATC
TACCTCGGCTACATTCTGCTCACCGGCATCATCCAGTTTGTTTACTGCTG
CCTGGTTGGAACCTTCCCGTTCAACTCCTTCCTATCTGGTTTCATCAGCA
CCGTCAGCTGTTTCGTCCTGGCAGTGTGCCTACGCCTGCAGGCCAATCCC
CAGAACAAGAGCGTGTTTGCCGGCATTTCGCCGGAACGCGGTTTCGCCGA
CTTCATCTTCGCTCATGTGATCCTTCATCTGGTGGTCATGAACTTCATCG
GTGCAAGCTTTCTAGACCAT

BO12239.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:04:52
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k12914-RA 339 CG13393-PA 1..336 17..352 1680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:53
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k12914-RA 526 CG13393-RA 126..461 17..352 1680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8383677..8384012 352..17 1680 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:04:51 has no hits.

BO12239.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:23 Download gff for BO12239.complete
Subject Subject Range Query Range Percent Splice Strand
CG13393-RA 1..339 17..356 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:01:41 Download gff for BO12239.complete
Subject Subject Range Query Range Percent Splice Strand
CG13393-RA 113..459 7..356 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:13 Download gff for BO12239.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k12914-RA 126..461 17..354 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:23 Download gff for BO12239.complete
Subject Subject Range Query Range Percent Splice Strand
CG13393-RA 113..459 7..356 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:56 Download gff for BO12239.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k12914-RA 126..461 17..354 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:56 Download gff for BO12239.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8383675..8384012 17..354 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:13 Download gff for BO12239.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8383675..8384012 17..354 99   Minus

BO12239.pep Sequence

Translation from 16 to 370

> BO12239.pep
MVELSSVISKFYNDYVQNTPKKLKLVDIYLGYILLTGIIQFVYCCLVGTF
PFNSFLSGFISTVSCFVLAVCLRLQANPQNKSVFAGISPERGFADFIFAH
VILHLVVMNFIGASFLDH

BO12239.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:41:09
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k12914-PA 112 CG13393-PA 1..112 1..112 578 100 Plus