Clone Sequence Records
BO12239.3prime Sequence
368 bp (367 high quality bases) assembled on 2006-04-20
> BO12239.3prime
ATGGTCTAGAAAGCTTGCACCGATGAAGTTCATGACCACCAGATGAAGGA
TCACATGAGCGAAGATGAAGTCGGCGAAACCGCGTTCCGGCGAAATGCCG
GCAAACACGCTCTTGTTCTGGGGATTGGCCTGCAGGCGTAGGCACACTGC
CAGGACGAAACAGCTGACGGTGCTGATGAAACCAGATAGGAAGGAGTTGA
ACGGGAAGGTTCCAACCAGGCAGCAGTAAACAAACTGGATGATGCCGGTG
AGCAGAATGTAGCCGAGGTAGATGTCCACCAGCTTCAGTTTCTTGGGCGT
ATTCTGCACGTAGTCGTTGTAGAACTTGGAAATGACGCTCGACAGCTCCA
CCATGTCGACTGATAACT
BO12239.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13393-PA | 339 | CG13393-RA | 1..336 | 354..19 | 1680 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:45:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k12914-RA | 526 | CG13393-RA | 126..461 | 354..19 | 1680 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:45:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8383677..8384012 | 19..354 | 1680 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:45:12 has no hits.
BO12239.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:15 Download gff for
BO12239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13393-PA | 1..339 | 15..354 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:38 Download gff for
BO12239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13393-PA | 1..339 | 15..354 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:33:59 Download gff for
BO12239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k12914-RA | 118..464 | 15..364 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:48:54 Download gff for
BO12239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k12914-RA | 118..464 | 15..364 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:48:54 Download gff for
BO12239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8383674..8384020 | 15..364 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:33:59 Download gff for
BO12239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8383674..8384020 | 15..364 | 98 | | Plus |
BO12239.5prime Sequence
368 bp (367 high quality bases) assembled on 2006-04-20
> BO12239.5prime
GAAGTTATCAGTCGACATGGTGGAGCTGTCGAGCGTCATTTCCAAGTTCT
ACAACGACTACGTGCAGAATACGCCCAAGAAACTGAAGCTGGTGGACATC
TACCTCGGCTACATTCTGCTCACCGGCATCATCCAGTTTGTTTACTGCTG
CCTGGTTGGAACCTTCCCGTTCAACTCCTTCCTATCTGGTTTCATCAGCA
CCGTCAGCTGTTTCGTCCTGGCAGTGTGCCTACGCCTGCAGGCCAATCCC
CAGAACAAGAGCGTGTTTGCCGGCATTTCGCCGGAACGCGGTTTCGCCGA
CTTCATCTTCGCTCATGTGATCCTTCATCTGGTGGTCATGAACTTCATCG
GTGCAAGCTTTCTAGACC
BO12239.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13393-PA | 339 | CG13393-RA | 1..336 | 17..352 | 1680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:48:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k12914-RA | 526 | CG13393-RA | 126..461 | 17..352 | 1680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:48:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8383677..8384012 | 352..17 | 1680 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:48:30 has no hits.
BO12239.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:16 Download gff for
BO12239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13393-PA | 1..339 | 17..356 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:39 Download gff for
BO12239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13393-PA | 1..339 | 17..356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 15:28:53 Download gff for
BO12239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k12914-RA | 118..464 | 7..356 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:23:00 Download gff for
BO12239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k12914-RA | 118..464 | 7..356 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:23:00 Download gff for
BO12239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8383674..8384020 | 7..356 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 15:28:53 Download gff for
BO12239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8383674..8384020 | 7..356 | 98 | | Minus |
BO12239.complete Sequence
370 bp assembled on 2007-06-22
GenBank Submission: FJ632373
> BO12239.complete
GAAGTTATCAGTCGACATGGTGGAGCTGTCGAGCGTCATTTCCAAGTTCT
ACAACGACTACGTGCAGAATACGCCCAAGAAACTGAAGCTGGTGGACATC
TACCTCGGCTACATTCTGCTCACCGGCATCATCCAGTTTGTTTACTGCTG
CCTGGTTGGAACCTTCCCGTTCAACTCCTTCCTATCTGGTTTCATCAGCA
CCGTCAGCTGTTTCGTCCTGGCAGTGTGCCTACGCCTGCAGGCCAATCCC
CAGAACAAGAGCGTGTTTGCCGGCATTTCGCCGGAACGCGGTTTCGCCGA
CTTCATCTTCGCTCATGTGATCCTTCATCTGGTGGTCATGAACTTCATCG
GTGCAAGCTTTCTAGACCAT
BO12239.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:04:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k12914-RA | 339 | CG13393-PA | 1..336 | 17..352 | 1680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k12914-RA | 526 | CG13393-RA | 126..461 | 17..352 | 1680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8383677..8384012 | 352..17 | 1680 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:04:51 has no hits.
BO12239.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:23 Download gff for
BO12239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13393-RA | 1..339 | 17..356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:01:41 Download gff for
BO12239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13393-RA | 113..459 | 7..356 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:13 Download gff for
BO12239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k12914-RA | 126..461 | 17..354 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:23 Download gff for
BO12239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13393-RA | 113..459 | 7..356 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:56 Download gff for
BO12239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k12914-RA | 126..461 | 17..354 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:56 Download gff for
BO12239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8383675..8384012 | 17..354 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:13 Download gff for
BO12239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8383675..8384012 | 17..354 | 99 | | Minus |
BO12239.pep Sequence
Translation from 16 to 370
> BO12239.pep
MVELSSVISKFYNDYVQNTPKKLKLVDIYLGYILLTGIIQFVYCCLVGTF
PFNSFLSGFISTVSCFVLAVCLRLQANPQNKSVFAGISPERGFADFIFAH
VILHLVVMNFIGASFLDH
BO12239.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:41:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k12914-PA | 112 | CG13393-PA | 1..112 | 1..112 | 578 | 100 | Plus |