Clone Sequence Records
BO12242.3prime Sequence
968 bp (808 high quality bases) assembled on 2006-04-20
> BO12242.3prime
ATGGTCTAGAAAGCTTGCGTTCTGGAGCACGAGCCACGGTAGCAGGATGA
TGCACAAGGACCAGGATAAGCCCATCGATCCACTCTTCAAGTTGGTATAA
CTGTCCACGATGTGAATCTTCCAGCCCATATTGCCATGGGTAAAGGAGTT
GTAGTACACAGTATCCGGCCATGTGATATTCGGTGTAATTTCCAATAGAG
CCGGTTCCCCTTCTACACACTCGGTGATGAGGGATCGATTGAACTTCTTG
AAAGTGGGGAAGTTATCATCCAGTCGACGATCACTATTTTGAGGATATCT
GGACAGGCACAGGGGACCAGCAGCCGTGGGCTTGGGCCTGCCTCTCCGGG
TGAATTCAACACCGGCTAATACACGAATCTCACTCTGCTTTGCATCAGAC
AGTCGGTCATACCCACCCTGGGGATCATCGGTGATAACCAACGGATGATA
GTGCTCCGGCGAGTGAGGATTATTGCCACCCCTAACCTTAAAGGTGTAGG
TCAGACCACGCTTTAGGTAAAGCTCTGGAATCATGTAGCCGTTGATGTAC
CAGGCCAAGCCACTGGACACATGATTCGTCAATCCCTGATAGCCACGAAG
TCCTCCAGAGGGTCCCAAGTAGGCGTTGAATGTGCGTACCGTTGCATCTG
TTATCCTGGTTCGCTCCCACACTGGAGGATTAGTCGTCTCCGCTCGTTTT
GTAAATGCAAAGCAATCATTAACCGGTTCTGTGGTGTTAAAATCTATCAC
TATATCGCTCTTGGGATAGTAAGTGTGAAAGGCGGGCTCGTTGTTGGAGT
CCAATGGGCCAAATGCCCAGATCACGTAGTTGCTGCGGTCTAGGAAGATC
TCCTTTATCGCATCATCGGATGACTTGAGCGTCCGCCTAAAACTGATCGT
ATTAATGCCATCCCTGCGACTATACGTATTCAATTGGAAGCTGTCCAATC
CACCACCCACATCGTCCC
BO12242.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6217-PA | 2070 | knk-RA | 1231..2067 | 855..19 | 4185 | 100 | Minus |
| CG6217-PA | 2070 | knk-RA | 1120..1225 | 966..861 | 455 | 97.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:01:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| knk-RA | 2674 | CG6217-RA | 1565..2512 | 966..19 | 4650 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:01:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10122527..10123151 | 19..643 | 3125 | 100 | Plus |
| 3R | 32079331 | 3R | 10123206..10123417 | 644..855 | 1060 | 100 | Plus |
| 3R | 32079331 | 3R | 10123494..10123590 | 870..966 | 440 | 96.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:01:13 has no hits.
BO12242.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:21 Download gff for
BO12242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knk-PA | 1118..2070 | 16..968 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:46 Download gff for
BO12242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6217-PA | 1118..2070 | 16..968 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:50:35 Download gff for
BO12242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knk-RA | 1563..2517 | 12..968 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:14:08 Download gff for
BO12242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knk-RA | 1563..2517 | 12..968 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:14:08 Download gff for
BO12242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10122522..10123151 | 12..643 | 99 | <- | Plus |
| 3R | 10123206..10123431 | 644..869 | 99 | <- | Plus |
| 3R | 10123494..10123592 | 870..968 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:50:35 Download gff for
BO12242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5948244..5948873 | 12..643 | 99 | <- | Plus |
| arm_3R | 5948928..5949153 | 644..869 | 99 | <- | Plus |
| arm_3R | 5949216..5949314 | 870..968 | 95 | | Plus |
BO12242.5prime Sequence
888 bp (788 high quality bases) assembled on 2006-04-20
> BO12242.5prime
GAAGTTATCAGTCGACATGGCATTGAGCAGCAGAGTTCTTTGTCTGCGAT
TGCAGCACCATTTATTACTGGTTATTTTAACGATTTTCCTGCTTTGCCCC
GCCGCCTCGGCCCAGAACGAAGAAGAAGATGGTCCGTACCGGGGAAAATA
TCTGGGGAAACTGAACTCCTACCATCATCAAGTGTCCGGCGATGTGTACG
CTGTGAATGAGTACACCTTTCTGATTGTGGGCTTTAACTACGATGGCAAC
GGGGCGGATACGTTTTTCTGGTCGGGCGCTAGTAATCGGCCGGGACCGCA
GGGATTCATTGTGCCCGATGAGTATGGCAAAACCAACATTCTGGATCGCT
ATCACAACAAGGATTTCACGCTGACGCTGCCGGATCGAAAGAAGATAACT
GAGATTAAATGGCTGGCGGTTTACGATCTGAGCAGTCAAAACAACTTTGG
CGACGTTTATATACCCGAGGAGTTCGATCCACCGATGAGCCAATTGGGCG
GAACCTTCTCCAAGCGCAGTCACAATGTGAGCAGCAGCAGTGTTGAGATC
TTGGACTCAAAGACCATTCGCATCAAGGACTTTACCTACGATGGGCGTGG
CAAGAGGACATTTTTCTGGACAGGAGTCGGGCCACAGCCATCGAGTCGAG
GAAGCAAGCTGCCAGATGAGCGAGGATACCTTGATCCTATAAGACAGTAC
AACAAGGAGACCATAGAACTGGAACTGCCAGGAGATAAGACTATCTTTGA
CATCGATTGGATCAGTGTATACGATGTGGCTGACAACGAGAACTATGGTC
ATGTTCTGTTCAACGATAAACTTAATGTTCCACCTTCCCTATGAAGTACA
CATTCGATTCTCCTGCCATTGCCGCACTACCAAGGAAT
BO12242.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6217-PA | 2070 | knk-RA | 1..825 | 17..841 | 4125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:42:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| knk-RA | 2674 | CG6217-RA | 446..1311 | 17..874 | 4140 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:41:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10124120..10124467 | 678..331 | 1740 | 100 | Minus |
| 3R | 32079331 | 3R | 10124542..10124764 | 330..108 | 1115 | 100 | Minus |
| 3R | 32079331 | 3R | 10123885..10124047 | 841..679 | 815 | 100 | Minus |
| 3R | 32079331 | 3R | 10125129..10125219 | 107..17 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:41:57 has no hits.
BO12242.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:22 Download gff for
BO12242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knk-PA | 1..851 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:47 Download gff for
BO12242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6217-PA | 1..851 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:44:18 Download gff for
BO12242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knk-RA | 446..1296 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:08:50 Download gff for
BO12242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knk-RA | 446..1296 | 17..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:08:50 Download gff for
BO12242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10123859..10124047 | 679..862 | 97 | <- | Minus |
| 3R | 10124120..10124467 | 331..678 | 100 | <- | Minus |
| 3R | 10124542..10124764 | 108..330 | 100 | <- | Minus |
| 3R | 10125129..10125219 | 17..107 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:44:18 Download gff for
BO12242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5949581..5949769 | 679..862 | 97 | <- | Minus |
| arm_3R | 5949842..5950189 | 331..678 | 100 | <- | Minus |
| arm_3R | 5950264..5950486 | 108..330 | 100 | <- | Minus |
| arm_3R | 5950851..5950941 | 17..107 | 100 | | Minus |
BO12242.complete Sequence
2101 bp assembled on 2008-01-17
GenBank Submission: FJ632374
> BO12242.complete
GAAGTTATCAGTCGACATGGCATTGAGCAGCAGAGTTCTTTGTCTGCGAT
TGCAGCACCATTTATTACTGGTTATTTTAACGATTTTCCTGCTTTGCCCC
GCCGCCTCGGCCCAGAACGAAGAAGAAGATGGTCCGTACCGGGGAAAATA
TCTGGGGAAACTGAACTCCTACCATCATCAAGTGTCCGGCGATGTGTACG
CTGTGAATGAGTACACCTTTCTGATTGTGGGCTTTAACTACGATGGCAAC
GGGGCGGATACGTTTTTCTGGTCGGGCGCTAGTAATCGGCCGGGACCGCA
GGGATTCATTGTGCCCGATGAGTATGGCAAAACCAACATTCTGGATCGCT
ATCACAACAAGGATTTCACGCTGACGCTGCCGGATCGAAAGAAGATAACT
GAGATTAAATGGCTGGCGGTTTACGATCTGAGCAGTCAAAACAACTTTGG
CGACGTTTATATACCCGAGGAGTTCGATCCACCGATGAGCCAATTGGGCG
GAACCTTCTCCAAGCGCAGTCACAATGTGAGCAGCAGCAGTGTTGAGATC
TTGGACTCAAAGACCATTCGCATCAAGGACTTTACCTACGATGGGCGTGG
CAAGAGGACATTTTTCTGGACAGGAGTCGGGCCACAGCCATCGAGTCGAG
GAAGCAAGCTGCCAGATGAGCGAGGATACCTTGATCCTATAAGACAGTAC
AACAAGGAGACCATAGAACTGGAACTGCCAGGAGATAAGACTATCTTTGA
CATCGATTGGATCAGTGTATACGATGTGGCTGACAACGAGAACTATGGTC
ATGTTCTGTTCAACGATAAACTTAATGTTCCACCTTCCCTAGTGAAAGTT
ACACCATTCGAATTCTCGCTGCCCAATTGCCGGCAACTACACAAGGATAT
GCAGGTGTCCTGGGAGGTTTTCGGGCCGCAGATCACGTTTCAACTATCCG
GTCAGGTGGGCGGCAACGATTATATGTCTTTCGGCATATCCGGATCTGAT
GTATCCAGCCAGATGATTGGCTCCGATGTCGTGGTGGCCTATATAGACGA
CATCAGAGGCTACACCGTGGACTACAATATCACTTCGTTAGCGCCGTGCG
TTCAGGTTTTGGGTCAAAACAAAGGAGTTTGCCGTGACGATGTGGTTGGT
GGATTGGACAGCTTCCAGTTGAATACGTATAGTCGCAAGGATGGCATTAA
TACGATCAGTTTTAGGCGGACGCTCAAGTCATCCGATGATGGCGATAAGG
AGATCTTCCTAGACCGCAGCAACTACGTGATCTGGGCATTTGGCCCATTG
GACTCCAACAACGAGCCCGCCTTTCACACTTACTATCCCAAGAGCGATAT
AGTGATAGATTTTAACACCACAGAACCGGTTAATGATTGCTTTGCATTTA
CAAAACGAGCGGAGACGACTAATCCTCCAGTGTGGGAGCGAACCAGGATA
ACAGATGCAACGGTACGCACATTCAACGCCTACTTGGGACCCTCTGGAGG
ACTTCGTGGCTATCAGGGATTGACGAATCATGTGTCCAGTGGCTTGGCCT
GGTACATCAACGGCTACATGATTCCAGAGCTTTACCTAAAGCGTGGTCTG
ACCTACACCTTTAAGGTTAGGGGTGGCAATAATCCTCACTCGCCGGAGCA
CTATCATCCGTTGGTTATCACCGATGATCCCCAGGGTGGGTATGACCGAC
TGTCTGATGCAAAGCAGAGTGAGATTCGTGTATTAGCCGGTGTTGAATTC
ACCCGGAGAGGCAGGCCCAAGCCCACGGCTGCTGGTCCCCTGTGCCTGTC
CAGATATCCTCAAAATAGTGATCGTCGACTGGATGATAACTTCCCCACTT
TCAAGAAGTTCAATCGATCCCTCATCACCGAGTGTGTAGAAGGGGAACCG
GCTCTATTGGAAATTACACCGAATATCACATGGCCGGATACTGTGTACTA
CAACTCCTTTACCCATGGCAATATGGGCTGGAAGATTCACATCGTGGACA
GTTATACCAACTTGAAGAGTGGATCGATGGGCTTATCCTGGTCCTTGTGC
ATCATCCTGCTACCGTGGCTCGTGCTCCAGAACGCAAGCTTTCTAGACCA
T
BO12242.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:16:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| knk-RA | 2070 | CG6217-PA | 1..2067 | 17..2083 | 10335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:16:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| knk-RA | 2674 | CG6217-RA | 446..2512 | 17..2083 | 10335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:16:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10122527..10123151 | 2083..1459 | 3125 | 100 | Minus |
| 3R | 32079331 | 3R | 10123494..10124047 | 1232..679 | 2770 | 100 | Minus |
| 3R | 32079331 | 3R | 10124120..10124467 | 678..331 | 1740 | 100 | Minus |
| 3R | 32079331 | 3R | 10123206..10123431 | 1458..1233 | 1130 | 100 | Minus |
| 3R | 32079331 | 3R | 10124542..10124764 | 330..108 | 1115 | 100 | Minus |
| 3R | 32079331 | 3R | 10125129..10125219 | 107..17 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:16:25 has no hits.
BO12242.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:05 Download gff for
BO12242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knk-RA | 1..2070 | 17..2086 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:03 Download gff for
BO12242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knk-RA | 443..2509 | 17..2085 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:17:06 Download gff for
BO12242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knk-RA | 446..2512 | 17..2085 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:05 Download gff for
BO12242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knk-RA | 443..2514 | 17..2090 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:29 Download gff for
BO12242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knk-RA | 446..2512 | 17..2085 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:17:29 Download gff for
BO12242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10124542..10124764 | 108..330 | 100 | <- | Minus |
| 3R | 10125129..10125219 | 17..107 | 100 | | Minus |
| 3R | 10122523..10123151 | 1459..2085 | 99 | <- | Minus |
| 3R | 10123206..10123431 | 1233..1458 | 100 | <- | Minus |
| 3R | 10123494..10124047 | 679..1232 | 100 | <- | Minus |
| 3R | 10124120..10124467 | 331..678 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:17:06 Download gff for
BO12242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5948928..5949153 | 1233..1458 | 100 | <- | Minus |
| arm_3R | 5948245..5948873 | 1459..2085 | 99 | <- | Minus |
| arm_3R | 5949216..5949769 | 679..1232 | 100 | <- | Minus |
| arm_3R | 5949842..5950189 | 331..678 | 100 | <- | Minus |
| arm_3R | 5950264..5950486 | 108..330 | 100 | <- | Minus |
| arm_3R | 5950851..5950941 | 17..107 | 100 | | Minus |
BO12242.pep Sequence
Translation from 16 to 2101
> BO12242.pep
MALSSRVLCLRLQHHLLLVILTIFLLCPAASAQNEEEDGPYRGKYLGKLN
SYHHQVSGDVYAVNEYTFLIVGFNYDGNGADTFFWSGASNRPGPQGFIVP
DEYGKTNILDRYHNKDFTLTLPDRKKITEIKWLAVYDLSSQNNFGDVYIP
EEFDPPMSQLGGTFSKRSHNVSSSSVEILDSKTIRIKDFTYDGRGKRTFF
WTGVGPQPSSRGSKLPDERGYLDPIRQYNKETIELELPGDKTIFDIDWIS
VYDVADNENYGHVLFNDKLNVPPSLVKVTPFEFSLPNCRQLHKDMQVSWE
VFGPQITFQLSGQVGGNDYMSFGISGSDVSSQMIGSDVVVAYIDDIRGYT
VDYNITSLAPCVQVLGQNKGVCRDDVVGGLDSFQLNTYSRKDGINTISFR
RTLKSSDDGDKEIFLDRSNYVIWAFGPLDSNNEPAFHTYYPKSDIVIDFN
TTEPVNDCFAFTKRAETTNPPVWERTRITDATVRTFNAYLGPSGGLRGYQ
GLTNHVSSGLAWYINGYMIPELYLKRGLTYTFKVRGGNNPHSPEHYHPLV
ITDDPQGGYDRLSDAKQSEIRVLAGVEFTRRGRPKPTAAGPLCLSRYPQN
SDRRLDDNFPTFKKFNRSLITECVEGEPALLEITPNITWPDTVYYNSFTH
GNMGWKIHIVDSYTNLKSGSMGLSWSLCIILLPWLVLQNASFLDH
BO12242.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| knk-PA | 689 | CG6217-PA | 1..689 | 1..689 | 3711 | 100 | Plus |
| CG34355-PE | 755 | CG34355-PE | 58..717 | 17..661 | 1122 | 35.9 | Plus |
| CG34355-PF | 748 | CG34355-PF | 58..710 | 17..661 | 1121 | 36.1 | Plus |
| CG34355-PB | 748 | CG34355-PB | 58..710 | 17..661 | 1121 | 36.1 | Plus |
| Skeletor-PC | 784 | CG14681-PB | 1..442 | 7..449 | 706 | 38 | Plus |
