Clone Sequence Records
BO12243.3prime Sequence
662 bp (661 high quality bases) assembled on 2006-04-20
> BO12243.3prime
ATGGTCTAGAAAGCTTGCTTTAAGAGCTTTTCGTCTGGTCCTTGTGGATC
CTTTGGTGTGGGTGCGCCTGTGCATGGTCAACTGGGCCTTGCCGGTGAAA
CTTTTTTGGCAGTCGGTGCATTTGAAGGGCCGCCTCTTATCCACCTCGTT
GCGAGTCTCCTTCTTCGGCTGCTTATCGTTCCGGTCCCCATCGTCCTCCT
CCTCCTCCTCCTCGCTCTTGATGCGATCCGTAAAATCCCAATCCTCGGCC
TCCAGGAGATCGCATGTCTCCTTGTCGCTTTGCTCCCTCTTCACGCGCGC
CACGTATTCCATGGTCCTTGTGTAGCGTCTCCTGAATCTCAAGGCCTCAC
GCAATTTAATAAGGCACGGTTCGCAAATTTTCAGCGGAAAGCCGTCCCCG
GTATCCACTGGATATGCGCTGCAGATATTCAGCAAATCAGCCGGCGTGGG
CTCCGGTTCCTTGGTTCGCTGTAGATCGTCGCTCAGTCTGTCCCCCAAGC
TCTTGTTGTCGTAGATGTCTAGCAGGTCCTTCGGCTCGTCCATACACACC
CGGCACATCTTCACCAATTCATCCATGGCTTCGTTGCTTCCTTCGATTCC
AAGCAAATACAATTCAAAAAGAATAACTAAACTGTATCGGATGACCATGT
CGACTGATAACT
BO12243.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17361-PA | 633 | CG17361-RA | 1..630 | 648..19 | 3150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:16:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17361-RA | 865 | CG17361-RA | 16..645 | 648..19 | 3150 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:16:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13997206..13997835 | 648..19 | 3150 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:16:49 has no hits.
BO12243.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:23 Download gff for
BO12243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17361-PA | 1..633 | 18..648 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:49 Download gff for
BO12243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17361-PA | 1..633 | 18..648 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:53:42 Download gff for
BO12243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17361-RA | 16..645 | 19..648 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:55:38 Download gff for
BO12243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17361-RA | 16..645 | 19..648 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:55:38 Download gff for
BO12243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13997206..13997835 | 19..648 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:53:42 Download gff for
BO12243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13990306..13990935 | 19..648 | 100 | | Minus |
BO12243.5prime Sequence
662 bp (661 high quality bases) assembled on 2006-04-20
> BO12243.5prime
GAAGTTATCAGTCGACATGGTCATCCGATACAGTTTAGTTATTCTTTTTG
AATTGTATTTGCTTGGAATCGAAGGAAGCAACGAAGCCATGGATGAATTG
GTGAAGATGTGCCGGGTGTGTATGGACGAGCCGAAGGACCTGCTAGACAT
CTACGACAACAAGAGCTTGGGGGACAGACTGAGCGACGATCTACAGCGAA
CCAAGGAACCGGAGCCCACGCCGGCTGATTTGCTGAATATCTGCAGCGCA
TATCCAGTGGATACCGGGGACGGCTTTCCGCTGAAAATTTGCGAACCGTG
CCTTATTAAATTGCGTGAGGCCTTGAGATTCAGGAGACGCTACACAAGGA
CCATGGAATACGTGGCGCGCGTGAAGAGGGAGCAAAGCGACAAGGAGACA
TGCGATCTCCTGGAGGCCGAGGATTGGGATTTTACGGATCGCATCAAGAG
CGAGGAGGAGGAGGAGGAGGACGATGGGGACCGGAACGATAAGCAGCCGA
AGAAGGAGACTCGCAACGAGGTGGATAAGAGGCGGCCCTTCAAATGCACC
GACTGCCAAAAAAGTTTCACCGGCAAGGCCCAGTTGACCATGCACAGGCG
CACCCACACCAAAGGATCCACAAGGACCAGACGAAAAGCTCTTAAAGCAA
GCTTTCTAGACC
BO12243.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17361-PA | 633 | CG17361-RA | 1..630 | 17..646 | 3150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:18:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17361-RA | 865 | CG17361-RA | 16..645 | 17..646 | 3150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:18:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13997206..13997835 | 17..646 | 3150 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 11:18:33 has no hits.
BO12243.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:24 Download gff for
BO12243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17361-PA | 1..633 | 17..647 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:50 Download gff for
BO12243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17361-PA | 1..633 | 17..647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:18:09 Download gff for
BO12243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17361-RA | 16..645 | 17..646 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:29:46 Download gff for
BO12243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17361-RA | 16..645 | 17..646 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:29:46 Download gff for
BO12243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13997206..13997835 | 17..646 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:18:09 Download gff for
BO12243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13990306..13990935 | 17..646 | 100 | | Plus |
BO12243.complete Sequence
664 bp assembled on 2006-10-11
GenBank Submission: FJ632375
> BO12243.complete
GAAGTTATCAGTCGACATGGTCATCCGATACAGTTTAGTTATTCTTTTTG
AATTGTATTTGCTTGGAATCGAAGGAAGCAACGAAGCCATGGATGAATTG
GTGAAGATGTGCCGGGTGTGTATGGACGAGCCGAAGGACCTGCTAGACAT
CTACGACAACAAGAGCTTGGGGGACAGACTGAGCGACGATCTACAGCGAA
CCAAGGAACCGGAGCCCACGCCGGCTGATTTGCTGAATATCTGCAGCGCA
TATCCAGTGGATACCGGGGACGGCTTTCCGCTGAAAATTTGCGAACCGTG
CCTTATTAAATTGCGTGAGGCCTTGAGATTCAGGAGACGCTACACAAGGA
CCATGGAATACGTGGCGCGCGTGAAGAGGGAGCAAAGCGACAAGGAGACA
TGCGATCTCCTGGAGGCCGAGGATTGGGATTTTACGGATCGCATCAAGAG
CGAGGAGGAGGAGGAGGAGGACGATGGGGACCGGAACGATAAGCAGCCGA
AGAAGGAGACTCGCAACGAGGTGGATAAGAGGCGGCCCTTCAAATGCACC
GACTGCCAAAAAAGTTTCACCGGCAAGGCCCAGTTGACCATGCACAGGCG
CACCCACACCAAAGGATCCACAAGGACCAGACGAAAAGCTCTTAAAGCAA
GCTTTCTAGACCAT
BO12243.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:53:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17361-RA | 633 | CG17361-PA | 1..630 | 17..646 | 3150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:53:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17361-RA | 865 | CG17361-RA | 16..645 | 17..646 | 3150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:52:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13997206..13997835 | 17..646 | 3150 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:53:00 has no hits.
BO12243.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:53 Download gff for
BO12243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17361-RA | 1..633 | 17..647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:25 Download gff for
BO12243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17361-RA | 14..643 | 17..646 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:07 Download gff for
BO12243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17361-RA | 16..645 | 17..648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:53 Download gff for
BO12243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17361-RA | 14..643 | 17..646 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:33:36 Download gff for
BO12243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17361-RA | 16..645 | 17..648 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:33:36 Download gff for
BO12243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13997206..13997835 | 17..648 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:07 Download gff for
BO12243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13990306..13990935 | 17..648 | 99 | | Plus |
BO12243.pep Sequence
Translation from 16 to 664
> BO12243.pep
MVIRYSLVILFELYLLGIEGSNEAMDELVKMCRVCMDEPKDLLDIYDNKS
LGDRLSDDLQRTKEPEPTPADLLNICSAYPVDTGDGFPLKICEPCLIKLR
EALRFRRRYTRTMEYVARVKREQSDKETCDLLEAEDWDFTDRIKSEEEEE
EDDGDRNDKQPKKETRNEVDKRRPFKCTDCQKSFTGKAQLTMHRRTHTKG
STRTRRKALKASFLDH
BO12243.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17361-PA | 210 | CG17361-PA | 1..210 | 1..210 | 1111 | 100 | Plus |
| CG15436-PA | 346 | CG15436-PA | 1..153 | 28..202 | 190 | 27.4 | Plus |
| CG17359-PA | 339 | CG17359-PA | 2..101 | 27..129 | 146 | 34.9 | Plus |
