Clone BO12244 Report

Search the DGRC for BO12244

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:122
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptCyp6a18-RA
Protein status:BO12244.pep: Imported from assembly
Sequenced Size:1555

Clone Sequence Records

BO12244.5prime Sequence

854 bp (823 high quality bases) assembled on 2006-04-20

> BO12244.5prime
GAAGTTATCAGTCGACATGCAGCTGACATACTTTCTCTTCCAAGTGGCAG
TCGCCCTACTGGCGATCGTGACCTATATACTCCATCGCAAACTAACGTAT
TTTAAGAGGCGTGGCATTCCGTATGATAAACCCCATCCTCTCAGAGGAAA
TATGGAGGGATATAAGAAAACGAGGACCGTTCACGAAATCCACCAGGAAT
ACTACAACAAATATCGAAATAGCAAGGCTCCTTTTGTGGGATTCTATCTG
TTTCAGAAGCCCGCCGCATTTGTTATAGATCTGGAGCTGGCCAAGCAAAT
ACTGATCAAGAACTTTTCCAATTTCACCGACAAGGGAATATACTACAACG
AGAAAGATGATCCCATGTCAGCGCATCTCTTTAATTTGGATGGACCCCAG
TGGCGTTTGCTTAGGAGCAAACTATCCTCGACATTCACGTCGGGCAAAAT
GAAGTTCATGTATCCGACGGTTGTGTCCGTGGCTGAGGAATTTATGGCTG
TGATGCACGAGAAGGTATCGGAAAACTCCATATTGGACGTTCGGGATCTG
GTGGCCAGGTTCACAGTGGATGTCATCGGAACCTGTGCCTTTGGCATCAA
ATGTAATAGTCTGCGAGATGAGAAGGCCGAGTTTTTGCACTTTGGCAGGC
GGGCTTTGCTGGATTCTCGTCATGGTAATCTAGTAAGTGGCCTCATGCGC
AGCTATCCCAATTTGGCCAGGCGACTGGGCCTTTGCCGAAACACGGCTCA
AATTCAGGAGTTCTATCAAAGAATAGTTAAAGAGACTGTCACTTTGCGAG
AAAAGGAGAATATAAAACGGAATGATTTCATGGATATGCTAATCGGCTTG
AAAA

BO12244.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG13977-PA 1524 Cyp6a18-RA 1..838 17..854 4190 100 Plus
CG10248-PA 1521 Cyp6a8-RA 529..582 545..598 170 92.5 Plus
CG10248-PA 1521 Cyp6a8-RA 244..290 260..306 135 91.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6a18-RB 4171 CG13977-RB 33..870 17..854 4190 100 Plus
Cyp6a18-RA 1730 CG13977-RA 33..870 17..854 4190 100 Plus
Cyp6a8-RA 1781 CG10248-RA 38..854 24..840 1235 77.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27478707..27479544 17..854 4190 100 Plus
2R 25286936 2R 14888157..14888973 840..24 1190 76.4 Minus
Blast to na_te.dros performed on 2015-02-13 08:47:09 has no hits.

BO12244.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:25 Download gff for BO12244.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13977-PA 1..834 17..850 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:52 Download gff for BO12244.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13977-PA 1..834 17..850 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:42:08 Download gff for BO12244.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp6a18-RA 25..866 8..850 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:19:54 Download gff for BO12244.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp6a18-RA 25..866 8..850 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:19:54 Download gff for BO12244.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27478699..27479540 8..850 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:42:08 Download gff for BO12244.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23304421..23305262 8..850 99   Plus

BO12244.complete Sequence

1555 bp assembled on 2010-06-24

GenBank Submission: KX797052

> BO12244.complete
GAAGTTATCAGTCGACATGCAGCTGACATACTTTCTCTTCCAAGTGGCAG
TCGCCCTACTGGCGATCGTGACCTATATACTCCATCGCAAACTAACGTAT
TTTAAGAGGCGTGGCATTCCGTATGATAAACCCCATCCTCTCAGAGGAAA
TATGGAGGGATATAAGAAAACGAGGACCGTTCACGAAATCCACCAGGAAT
ACTACAACAAATATCGAAATAGCAAGGCTCCTTTTGTGGGATTCTATCTG
TTTCAGAAGCCCGCCGCATTTGTTATAGATCTGGAGCTGGCCAAGCAAAT
ACTGATCAAGAACTTTTCCAATTTCACCGACAAGGGAATATACTACAACG
AGAAAGATGATCCCATGTCAGCGCATCTCTTTAATTTGGATGGACCCCAG
TGGCGTTTGCTTAGGAGCAAACTATCCTCGACATTCACGTCGGGCAAAAT
GAAGTTCATGTATCCGACGGTTGTGTCCGTGGCTGAGGAATTTATGGCTG
TGATGCACGAGAAGGTATCGGAAAACTCCATATTGGACGTTCGGGATCTG
GTGGCCAGGTTCACAGTGGATGTCATCGGAACCTGTGCCTTTGGCATCAA
ATGTAATAGTCTGCGAGATGAGAAGGCCGAGTTTTTGCACTTTGGCAGGC
GGGCTTTGCTGGATTCTCGTCATGGTAATCTAGTAAGTGGCCTCATGCGC
AGCTATCCCAATTTGGCCAGGCGACTGGGCCTTTGCCGAAACACGGCTCA
AATTCAGGAGTTCTATCAAAGAATAGTTAAAGAGACTGTCACTTTGCGAG
AAAAGGAGAATATAAAACGGAATGATTTCATGGATATGCTAATCGGCTTG
AAAAACCAGAAGAATATGACTCTTGAAAATGGGGAGGTTGTTAAGGGCCT
AACCATGGATGAGATCGTTGCCCAAGCTTTTGTGTTCTTCATCGCTGGCT
TTGATACCTCATCCTCCACCATGGGATTTGCCCTCTACGAGCTGGCCAAG
AATCCGAGTATCCAGGATAAGGTGAGAGCTGAGTTGGGGCAGGTTCTGGA
GCAACACGATCAAAAGTTTACCTACGAGTGCATCAAGGATCTAAAGTACC
TCGACCAAGTTATAAATGAAACTCTACGCCATTATACCATTGTACCGAAT
GTGGATCGAGTGGCCGCCAAACGTTTTGTGGTTCCGGGCAATCCCAAATT
TGTCATCGAGGCTGGACAGTCGGTCATTATTCCATCATCGGCCATACATC
ACGATCCCAGTATTTATCCCGAACCCAATGAGTTTCGACCGGAGAGGTTT
TCTCCAGAAGAATCCGCCAAACGTCCCTCGGTTGCCTGGCTTCCCTTCGG
AGAAGGTCCTCGCAACTGCATTGGACTGAGATTTGGACAGATGCAGGCTC
GTATTGGACTAGCCATGCTCATTAAGAACTTCACATTCTCCCCATGCTCA
GCGACACCAGATCCCTTGACCTTCGATCCTCATTCCGCCATTTTACTCGG
AATTAAAGGCGGAATTCAGTTGAAGGTGGAGGCAATCGCAAGCTTTCTAG
ACCAT

BO12244.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:44:27
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6a18-RB 1524 CG13977-PB 1..1521 17..1537 7605 100 Plus
Cyp6a18-RA 1524 CG13977-PA 1..1521 17..1537 7605 100 Plus
Cyp6a8-RA 1521 CG10248-PA 8..1433 24..1449 2450 78.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:44:28
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6a18-RB 4171 CG13977-RB 33..1553 17..1537 7605 100 Plus
Cyp6a18-RA 1730 CG13977-RA 33..1553 17..1537 7605 100 Plus
Cyp6a8-RA 1781 CG10248-RA 38..1463 24..1449 2450 78.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:44:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27478707..27479808 17..1118 5510 100 Plus
3R 32079331 3R 27479867..27480286 1118..1537 2100 100 Plus
2R 25286936 2R 14887879..14888973 1118..24 1710 77.1 Minus
2R 25286936 2R 14887489..14887820 1449..1118 745 81.6 Minus
2R 25286936 2R 14885884..14885990 1004..898 190 78.5 Minus
Blast to na_te.dros performed on 2014-11-28 07:44:26 has no hits.

BO12244.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-24 14:15:33 Download gff for BO12244.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6a18-RA 31..1551 17..1539 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:48 Download gff for BO12244.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6a18-RA 33..1553 17..1539 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:02:54 Download gff for BO12244.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6a18-RA 33..1553 17..1539 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:02:54 Download gff for BO12244.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27478707..27479808 17..1118 100 -> Plus
3R 27479868..27480286 1119..1539 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:48 Download gff for BO12244.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23304429..23305530 17..1118 100 -> Plus
arm_3R 23305590..23306008 1119..1539 99   Plus

BO12244.pep Sequence

Translation from 16 to 1555

> BO12244.pep
MQLTYFLFQVAVALLAIVTYILHRKLTYFKRRGIPYDKPHPLRGNMEGYK
KTRTVHEIHQEYYNKYRNSKAPFVGFYLFQKPAAFVIDLELAKQILIKNF
SNFTDKGIYYNEKDDPMSAHLFNLDGPQWRLLRSKLSSTFTSGKMKFMYP
TVVSVAEEFMAVMHEKVSENSILDVRDLVARFTVDVIGTCAFGIKCNSLR
DEKAEFLHFGRRALLDSRHGNLVSGLMRSYPNLARRLGLCRNTAQIQEFY
QRIVKETVTLREKENIKRNDFMDMLIGLKNQKNMTLENGEVVKGLTMDEI
VAQAFVFFIAGFDTSSSTMGFALYELAKNPSIQDKVRAELGQVLEQHDQK
FTYECIKDLKYLDQVINETLRHYTIVPNVDRVAAKRFVVPGNPKFVIEAG
QSVIIPSSAIHHDPSIYPEPNEFRPERFSPEESAKRPSVAWLPFGEGPRN
CIGLRFGQMQARIGLAMLIKNFTFSPCSATPDPLTFDPHSAILLGIKGGI
QLKVEAIASFLDH

BO12244.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6a18-PB 507 CG13977-PB 1..507 1..507 2635 100 Plus
Cyp6a18-PA 507 CG13977-PA 1..507 1..507 2635 100 Plus
Cyp6a8-PA 506 CG10248-PA 1..506 1..507 2133 79.1 Plus
Cyp6a2-PA 506 CG9438-PA 2..506 5..507 1479 53.4 Plus
Cyp6a21-PA 504 CG10247-PA 10..504 13..507 1391 54 Plus