Clone Sequence Records
BO12244.5prime Sequence
854 bp (823 high quality bases) assembled on 2006-04-20
> BO12244.5prime
GAAGTTATCAGTCGACATGCAGCTGACATACTTTCTCTTCCAAGTGGCAG
TCGCCCTACTGGCGATCGTGACCTATATACTCCATCGCAAACTAACGTAT
TTTAAGAGGCGTGGCATTCCGTATGATAAACCCCATCCTCTCAGAGGAAA
TATGGAGGGATATAAGAAAACGAGGACCGTTCACGAAATCCACCAGGAAT
ACTACAACAAATATCGAAATAGCAAGGCTCCTTTTGTGGGATTCTATCTG
TTTCAGAAGCCCGCCGCATTTGTTATAGATCTGGAGCTGGCCAAGCAAAT
ACTGATCAAGAACTTTTCCAATTTCACCGACAAGGGAATATACTACAACG
AGAAAGATGATCCCATGTCAGCGCATCTCTTTAATTTGGATGGACCCCAG
TGGCGTTTGCTTAGGAGCAAACTATCCTCGACATTCACGTCGGGCAAAAT
GAAGTTCATGTATCCGACGGTTGTGTCCGTGGCTGAGGAATTTATGGCTG
TGATGCACGAGAAGGTATCGGAAAACTCCATATTGGACGTTCGGGATCTG
GTGGCCAGGTTCACAGTGGATGTCATCGGAACCTGTGCCTTTGGCATCAA
ATGTAATAGTCTGCGAGATGAGAAGGCCGAGTTTTTGCACTTTGGCAGGC
GGGCTTTGCTGGATTCTCGTCATGGTAATCTAGTAAGTGGCCTCATGCGC
AGCTATCCCAATTTGGCCAGGCGACTGGGCCTTTGCCGAAACACGGCTCA
AATTCAGGAGTTCTATCAAAGAATAGTTAAAGAGACTGTCACTTTGCGAG
AAAAGGAGAATATAAAACGGAATGATTTCATGGATATGCTAATCGGCTTG
AAAA
BO12244.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13977-PA | 1524 | Cyp6a18-RA | 1..838 | 17..854 | 4190 | 100 | Plus |
CG10248-PA | 1521 | Cyp6a8-RA | 529..582 | 545..598 | 170 | 92.5 | Plus |
CG10248-PA | 1521 | Cyp6a8-RA | 244..290 | 260..306 | 135 | 91.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:47:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6a18-RB | 4171 | CG13977-RB | 33..870 | 17..854 | 4190 | 100 | Plus |
Cyp6a18-RA | 1730 | CG13977-RA | 33..870 | 17..854 | 4190 | 100 | Plus |
Cyp6a8-RA | 1781 | CG10248-RA | 38..854 | 24..840 | 1235 | 77.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:47:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27478707..27479544 | 17..854 | 4190 | 100 | Plus |
2R | 25286936 | 2R | 14888157..14888973 | 840..24 | 1190 | 76.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:47:09 has no hits.
BO12244.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:25 Download gff for
BO12244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13977-PA | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:52 Download gff for
BO12244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13977-PA | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:42:08 Download gff for
BO12244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6a18-RA | 25..866 | 8..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:19:54 Download gff for
BO12244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6a18-RA | 25..866 | 8..850 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:19:54 Download gff for
BO12244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27478699..27479540 | 8..850 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:42:08 Download gff for
BO12244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23304421..23305262 | 8..850 | 99 | | Plus |
BO12244.complete Sequence
1555 bp assembled on 2010-06-24
GenBank Submission: KX797052
> BO12244.complete
GAAGTTATCAGTCGACATGCAGCTGACATACTTTCTCTTCCAAGTGGCAG
TCGCCCTACTGGCGATCGTGACCTATATACTCCATCGCAAACTAACGTAT
TTTAAGAGGCGTGGCATTCCGTATGATAAACCCCATCCTCTCAGAGGAAA
TATGGAGGGATATAAGAAAACGAGGACCGTTCACGAAATCCACCAGGAAT
ACTACAACAAATATCGAAATAGCAAGGCTCCTTTTGTGGGATTCTATCTG
TTTCAGAAGCCCGCCGCATTTGTTATAGATCTGGAGCTGGCCAAGCAAAT
ACTGATCAAGAACTTTTCCAATTTCACCGACAAGGGAATATACTACAACG
AGAAAGATGATCCCATGTCAGCGCATCTCTTTAATTTGGATGGACCCCAG
TGGCGTTTGCTTAGGAGCAAACTATCCTCGACATTCACGTCGGGCAAAAT
GAAGTTCATGTATCCGACGGTTGTGTCCGTGGCTGAGGAATTTATGGCTG
TGATGCACGAGAAGGTATCGGAAAACTCCATATTGGACGTTCGGGATCTG
GTGGCCAGGTTCACAGTGGATGTCATCGGAACCTGTGCCTTTGGCATCAA
ATGTAATAGTCTGCGAGATGAGAAGGCCGAGTTTTTGCACTTTGGCAGGC
GGGCTTTGCTGGATTCTCGTCATGGTAATCTAGTAAGTGGCCTCATGCGC
AGCTATCCCAATTTGGCCAGGCGACTGGGCCTTTGCCGAAACACGGCTCA
AATTCAGGAGTTCTATCAAAGAATAGTTAAAGAGACTGTCACTTTGCGAG
AAAAGGAGAATATAAAACGGAATGATTTCATGGATATGCTAATCGGCTTG
AAAAACCAGAAGAATATGACTCTTGAAAATGGGGAGGTTGTTAAGGGCCT
AACCATGGATGAGATCGTTGCCCAAGCTTTTGTGTTCTTCATCGCTGGCT
TTGATACCTCATCCTCCACCATGGGATTTGCCCTCTACGAGCTGGCCAAG
AATCCGAGTATCCAGGATAAGGTGAGAGCTGAGTTGGGGCAGGTTCTGGA
GCAACACGATCAAAAGTTTACCTACGAGTGCATCAAGGATCTAAAGTACC
TCGACCAAGTTATAAATGAAACTCTACGCCATTATACCATTGTACCGAAT
GTGGATCGAGTGGCCGCCAAACGTTTTGTGGTTCCGGGCAATCCCAAATT
TGTCATCGAGGCTGGACAGTCGGTCATTATTCCATCATCGGCCATACATC
ACGATCCCAGTATTTATCCCGAACCCAATGAGTTTCGACCGGAGAGGTTT
TCTCCAGAAGAATCCGCCAAACGTCCCTCGGTTGCCTGGCTTCCCTTCGG
AGAAGGTCCTCGCAACTGCATTGGACTGAGATTTGGACAGATGCAGGCTC
GTATTGGACTAGCCATGCTCATTAAGAACTTCACATTCTCCCCATGCTCA
GCGACACCAGATCCCTTGACCTTCGATCCTCATTCCGCCATTTTACTCGG
AATTAAAGGCGGAATTCAGTTGAAGGTGGAGGCAATCGCAAGCTTTCTAG
ACCAT
BO12244.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:44:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6a18-RB | 1524 | CG13977-PB | 1..1521 | 17..1537 | 7605 | 100 | Plus |
Cyp6a18-RA | 1524 | CG13977-PA | 1..1521 | 17..1537 | 7605 | 100 | Plus |
Cyp6a8-RA | 1521 | CG10248-PA | 8..1433 | 24..1449 | 2450 | 78.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:44:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6a18-RB | 4171 | CG13977-RB | 33..1553 | 17..1537 | 7605 | 100 | Plus |
Cyp6a18-RA | 1730 | CG13977-RA | 33..1553 | 17..1537 | 7605 | 100 | Plus |
Cyp6a8-RA | 1781 | CG10248-RA | 38..1463 | 24..1449 | 2450 | 78.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:44:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27478707..27479808 | 17..1118 | 5510 | 100 | Plus |
3R | 32079331 | 3R | 27479867..27480286 | 1118..1537 | 2100 | 100 | Plus |
2R | 25286936 | 2R | 14887879..14888973 | 1118..24 | 1710 | 77.1 | Minus |
2R | 25286936 | 2R | 14887489..14887820 | 1449..1118 | 745 | 81.6 | Minus |
2R | 25286936 | 2R | 14885884..14885990 | 1004..898 | 190 | 78.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 07:44:26 has no hits.
BO12244.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-24 14:15:33 Download gff for
BO12244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6a18-RA | 31..1551 | 17..1539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:48 Download gff for
BO12244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6a18-RA | 33..1553 | 17..1539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:02:54 Download gff for
BO12244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6a18-RA | 33..1553 | 17..1539 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:02:54 Download gff for
BO12244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27478707..27479808 | 17..1118 | 100 | -> | Plus |
3R | 27479868..27480286 | 1119..1539 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:48 Download gff for
BO12244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23304429..23305530 | 17..1118 | 100 | -> | Plus |
arm_3R | 23305590..23306008 | 1119..1539 | 99 | | Plus |
BO12244.pep Sequence
Translation from 16 to 1555
> BO12244.pep
MQLTYFLFQVAVALLAIVTYILHRKLTYFKRRGIPYDKPHPLRGNMEGYK
KTRTVHEIHQEYYNKYRNSKAPFVGFYLFQKPAAFVIDLELAKQILIKNF
SNFTDKGIYYNEKDDPMSAHLFNLDGPQWRLLRSKLSSTFTSGKMKFMYP
TVVSVAEEFMAVMHEKVSENSILDVRDLVARFTVDVIGTCAFGIKCNSLR
DEKAEFLHFGRRALLDSRHGNLVSGLMRSYPNLARRLGLCRNTAQIQEFY
QRIVKETVTLREKENIKRNDFMDMLIGLKNQKNMTLENGEVVKGLTMDEI
VAQAFVFFIAGFDTSSSTMGFALYELAKNPSIQDKVRAELGQVLEQHDQK
FTYECIKDLKYLDQVINETLRHYTIVPNVDRVAAKRFVVPGNPKFVIEAG
QSVIIPSSAIHHDPSIYPEPNEFRPERFSPEESAKRPSVAWLPFGEGPRN
CIGLRFGQMQARIGLAMLIKNFTFSPCSATPDPLTFDPHSAILLGIKGGI
QLKVEAIASFLDH
BO12244.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:42:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6a18-PB | 507 | CG13977-PB | 1..507 | 1..507 | 2635 | 100 | Plus |
Cyp6a18-PA | 507 | CG13977-PA | 1..507 | 1..507 | 2635 | 100 | Plus |
Cyp6a8-PA | 506 | CG10248-PA | 1..506 | 1..507 | 2133 | 79.1 | Plus |
Cyp6a2-PA | 506 | CG9438-PA | 2..506 | 5..507 | 1479 | 53.4 | Plus |
Cyp6a21-PA | 504 | CG10247-PA | 10..504 | 13..507 | 1391 | 54 | Plus |