Clone Sequence Records
BO12246.3prime Sequence
891 bp (828 high quality bases) assembled on 2006-04-20
> BO12246.3prime
ATGGTCTAGAAAGCTTGCCCTCATAAGCTTGAGGAAGGAGGAGACGGGAA
GCTCCAGAAAGATGGCCAGCAAGAAGGAGCAGAGATAGGACACGGTCACC
GTAAAAAAGATGAAAGCAAACATCATGCCCGTGCCAAAATAAATGGGCTC
CCGCACTGTGGCCAAGACGATTCTCGCCACAAGAAGGTGGACGATAAAGG
CTCCATAAGTGAGGCGTCCCAAAATGCGGAAAATGGGCAAGCAGCAGAAC
TTACGGAAAATCCATCCCACTTTGCTGGCCATGCCCACGATGAAGATTCC
CAGCCCGAAGCCCCAGATGTTTCGCTGCAGGCCGGCATATAATGCTCCCC
AAATGGCCGACGGCGTCACGTAGTAGTGCTGGAAGATGGGATGAGCACTA
AACAGCCATAGAATCCCCACTGGAATAAGTGTAAACCAAAGAAGCTGGAA
GCTCTTTAACTCCCGTAGTTTGTATTGCTTCAATGCCAACTGATCGTAAA
CCAAAGCGGCCAGGACTCCACAGAAATAGCTACCGAAGTTCATAAAGGAC
GACGTGTAGAATTCGGTGAATTGACGATCTCCGATAAAGGAATCCTTCTG
GGTTTGTGGCGTGGGTACAAAAATGGGATAGTAGTTCATGGCATATGTGA
GCACCATTGGCACCACCACAAAAAGACCCAAAATGCCCGCATAGAGCTGT
TTGCTCCATCTGACGAACCGGTGACCCAGCATCAGCAGCACCAAGCTGAG
CACAAAGGAATGAGTATCCGCTGCCAAATACCAACCTTGGAGCAAGCACC
GCTCATCCGTGCGTACAAAGTTGTTGACGTAGAGCAGATTGGTCCACCAG
TTGCGTCGACAAGCCAACTGCTCCCGCTCAAAGATGTGCCG
BO12246.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4576-PA | 2031 | CG4576-RA | 1156..2028 | 891..19 | 4340 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:36:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4576-RA | 2433 | CG4576-RA | 1506..2378 | 891..19 | 4350 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:36:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15829548..15829889 | 604..263 | 1710 | 100 | Minus |
3R | 32079331 | 3R | 15829289..15829483 | 799..605 | 960 | 99.5 | Minus |
3R | 32079331 | 3R | 15829951..15830093 | 263..121 | 715 | 100 | Minus |
3R | 32079331 | 3R | 15830164..15830266 | 121..19 | 515 | 100 | Minus |
3R | 32079331 | 3R | 15829133..15829225 | 891..799 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:36:30 has no hits.
BO12246.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:27 Download gff for
BO12246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4576-PA | 1156..2031 | 18..891 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:55 Download gff for
BO12246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4576-PA | 1156..2031 | 18..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:06:35 Download gff for
BO12246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4576-RA | 1506..2382 | 13..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:16:23 Download gff for
BO12246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4576-RA | 1506..2382 | 13..891 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:16:23 Download gff for
BO12246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15829133..15829225 | 799..891 | 100 | -> | Minus |
3R | 15829290..15829483 | 605..798 | 99 | -> | Minus |
3R | 15829548..15829888 | 264..604 | 100 | -> | Minus |
3R | 15829951..15830093 | 121..263 | 100 | -> | Minus |
3R | 15830165..15830270 | 13..120 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:06:35 Download gff for
BO12246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11654855..11654947 | 799..891 | 100 | -> | Minus |
arm_3R | 11655012..11655205 | 605..798 | 99 | -> | Minus |
arm_3R | 11655270..11655610 | 264..604 | 100 | -> | Minus |
arm_3R | 11655673..11655815 | 121..263 | 100 | -> | Minus |
arm_3R | 11655887..11655992 | 13..120 | 97 | | Minus |
BO12246.5prime Sequence
868 bp (795 high quality bases) assembled on 2006-04-20
> BO12246.5prime
GAAGTTATCAGTCGACATGCATCCCATGACGATGATGATGCTTCACATCG
TGATTTTAGCAGCCACTTTTACGGCTGCGCAGTGTTTTCAATTGAACATG
ACGCAGTTCTATGAGATGCCTCCTCTATACGACTTGGATGACTATGATCG
TTGCCTCCAGGAATTGAATGGCCAGGCGTCCACTTACTGCTTCGTCCGCG
CGGAAGTCCAGCCCGATGAGTCTGTAGCGGCATGGCGGGCAATTGCAGAG
ATTTCGCAGTACGATCGCCATCACTTCGATCACCGACAGCTCTATTTCGG
TCTCTGCCTGCGCGAATGTGAGGCGTCTCTGGCCGGGTTGAATAAAAGCG
AACTGGAGGCCCTGCAAGCCGGCCTGCTATCGGAAAATGCAAAGGTGAAC
GTATATCTGGACTTGTTCTCGATGGAAGCCAATAACCGCCAACGGCACCA
GCGCTTGACAAATGCCTGCCTGAACTGGCGTCTGCAGCGTCGTGGATTCG
GGGTGCTGGCCAAGAGCGTGGTGGAGTACTGCGATGAGGCGGGACATCAA
GTGGAAGATGATGCGTGGAACCTGACCTTCTACGGAATCTTGGGCACTCT
ACTGGTTCTGGCTTGTCTGGGTAGCTTAGTGGATCTGCATCTAAAGCGAA
GCCGTCATGATAAAATGCTCAAGGAGCGAGATCACTACAAGACACCGCCC
AAGAGCACTGCCCAACAGGTGCTGCTCACCTTTTCGGTGGCCCGCAATTG
GTACCGACTTAATCAGGAGCCAAGTGGTAAGATCGGTCGCGAGCTGAGAT
TTCTCGACTGCTTCAAGTTCTTTGCCATGTTCATGGTGATATTTGCGCAC
ACCAACTGGGTGATTTAC
BO12246.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4576-PA | 2031 | CG4576-RA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:46:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4576-RA | 2433 | CG4576-RA | 351..1202 | 17..868 | 4260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:45:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15828521..15828829 | 560..868 | 1545 | 100 | Plus |
3R | 32079331 | 3R | 15827101..15827398 | 99..396 | 1490 | 100 | Plus |
3R | 32079331 | 3R | 15828226..15828393 | 393..560 | 840 | 100 | Plus |
3R | 32079331 | 3R | 15826097..15826178 | 17..98 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:45:57 has no hits.
BO12246.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:28 Download gff for
BO12246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4576-PA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:57 Download gff for
BO12246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4576-PA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:44:41 Download gff for
BO12246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4576-RA | 348..1202 | 12..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:09:28 Download gff for
BO12246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4576-RA | 348..1202 | 12..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:09:28 Download gff for
BO12246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15826094..15826178 | 12..98 | 97 | -> | Plus |
3R | 15827101..15827396 | 99..394 | 100 | -> | Plus |
3R | 15828228..15828393 | 395..560 | 100 | -> | Plus |
3R | 15828522..15828829 | 561..868 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:44:41 Download gff for
BO12246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11651816..11651900 | 12..98 | 97 | -> | Plus |
arm_3R | 11652823..11653118 | 99..394 | 100 | -> | Plus |
arm_3R | 11653950..11654115 | 395..560 | 100 | -> | Plus |
arm_3R | 11654244..11654551 | 561..868 | 100 | | Plus |
BO12246.complete Sequence
2062 bp assembled on 2008-01-17
GenBank Submission: FJ632376
> BO12246.complete
GAAGTTATCAGTCGACATGCATCCCATGACGATGATGATGCTTCACATCG
TGATTTTAGCAGCCACTTTTACGGCTGCGCAGTGTTTTCAATTGAACATG
ACGCAGTTCTATGAGATGCCTCCTCTATACGACTTGGATGACTATGATCG
TTGCCTCCAGGAATTGAATGGCCAGGCGTCCACTTACTGCTTCGTCCGCG
CGGAAGTCCAGCCCGATGAGTCTGTAGCGGCATGGCGGGCAATTGCAGAG
ATTTCGCAGTACGATCGCCATCACTTCGATCACCGACAGCTCTATTTCGG
TCTCTGCCTGCGCGAATGTGAGGCGTCTCTGGCCGGGTTGAATAAAAGCG
AACTGGAGGCCCTGCAAGCCGGCCTGCTATCGGAAAATGCAAAGGTGAAC
GTATATCTGGACTTGTTCTCGATGGAAGCCAATAACCGCCAACGGCACCA
GCGCTTGACAAATGCCTGCCTGAACTGGCGTCTGCAGCGTCGTGGATTCG
GGGTGCTGGCCAAGAGCGTGGTGGAGTACTGCGATGAGGCGGGACATCAA
GTGGAAGATGATGCGTGGAACCTGACCTTCTACGGAATCTTGGGCACTCT
ACTGGTTCTGGCTTGTCTGGGTAGCTTAGTGGATCTGCATCTAAAGCGAA
GCCGTCATGATAAAATGCTCAAGGAGCGAGATCACTACAAGACACCGCCC
AAGAGCACTGCCCAACAGGTGCTGCTCACCTTTTCGGTGGCCCGCAATTG
GTACCGACTTAATCAGGAGCCAAGTGGTAAGATCGGTCGCGAGCTGAGAT
TTCTCGACTGCTTCAAGTTCTTTGCCATGTTCATGGTGATATTTGCGCAC
ACCAACTGGGTGATTTACGAGAGCGCCATCAGCAATCCGCAGGATCCGGA
GCGACTGCTTCACACGGCAGCTGGCACTTTACTCGTTTCGGGATCATTGA
TCACTGTGACCTTTTTTGTGATCAGTGGTTTGTTGCTTACCATTAACTGG
CTGGCCGTTTCACGTTCGCTAGAATCTAAAAAGGACACCTGGAGCTTCGG
CCAGTATGCTTTGCTATTTGTCAAGTTTAACATCTTCCGATACATCCGAC
TGACGGTTCCATATGCCTTTGTATTGCTCATGAGTGGCGTTTACTTTGAG
AACGCTGGAGGTCCACTGTGGCGGCACATCTTTGAGCGGGAGCAGTTGGC
TTGTCGACGCAACTGGTGGACCAATCTGCTCTACGTCAACAACTTTGTAC
GCACGGATGAGCGGTGCCTGCTCCAAGGTTGGTATTTGGCAGCGGATACT
CATTCCTTTGTGCTCAGCTTGGTGCTGCTGATGCTGGGTCACCGGTTCGT
CAGATGGAGCAAACAGCTCTATGCGGGCATTTTGGGTCTTTTTGTGGTGG
TGCCAATGGTGCTCACATATGCCATGAACTACTATCCCATTTTTGTACCC
ACGCCACAAACCCAGAAGGATTCCTTTATCGGAGATCGTCAATTCACCGA
ATTCTACACGTCGTCCTTTATGAACTTCGGTAGCTATTTCTGTGGAGTCC
TGGCCGCTTTGGTTTACGATCAGTTGGCATTGAAGCAATACAAACTACGG
GAGTTAAAGAGCTTCCAGCTTCTTTGGTTTACACTTATTCCAGTGGGGAT
TCTATGGCTGTTTAGTGCTCATCCCATCTTCCAGCACTACTACGTGACGC
CGTCGGCCATTTGGGGAGCATTATATGCCGGCCTGCAGCGAAACATCTGG
GGCTTCGGGCTGGGAATCTTCATCGTGGGCATGGCCAGCAAAGTGGGATG
GATTTTCCGTAAGTTCTGCTGCTTGCCCATTTTCCGCATTTTGGGACGCC
TCACTTATGGAGCCTTTATCGTCCACCTTCTTGTGGCGAGAATCGTCTTG
GCCACAGTGCGGGAGCCCATTTATTTTGGCACGGGCATGATGTTTGCTTT
CATCTTTTTTACGGTGACCGTGTCCTATCTCTGCTCCTTCTTGCTGGCCA
TCTTTCTGGAGCTTCCCGTCTCCTCCTTCCTCAAGCTTATGAGGGCAAGC
TTTCTAGACCAT
BO12246.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:34:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4576-RA | 2031 | CG4576-PA | 1..2028 | 17..2044 | 10140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:35:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4576-RA | 2433 | CG4576-RA | 351..2378 | 17..2044 | 10140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:34:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15828521..15829225 | 560..1264 | 3525 | 100 | Plus |
3R | 32079331 | 3R | 15829548..15829889 | 1459..1800 | 1710 | 100 | Plus |
3R | 32079331 | 3R | 15827101..15827398 | 99..396 | 1490 | 100 | Plus |
3R | 32079331 | 3R | 15829289..15829483 | 1264..1458 | 975 | 100 | Plus |
3R | 32079331 | 3R | 15828226..15828393 | 393..560 | 840 | 100 | Plus |
3R | 32079331 | 3R | 15829951..15830093 | 1800..1942 | 715 | 100 | Plus |
3R | 32079331 | 3R | 15830164..15830266 | 1942..2044 | 515 | 100 | Plus |
3R | 32079331 | 3R | 15826097..15826178 | 17..98 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:34:58 has no hits.
BO12246.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:06 Download gff for
BO12246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4576-RA | 1..2031 | 17..2045 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:44 Download gff for
BO12246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4576-RA | 349..2376 | 17..2046 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:20 Download gff for
BO12246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4576-RA | 351..2378 | 17..2046 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:06 Download gff for
BO12246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4576-RA | 346..2380 | 12..2050 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:48:50 Download gff for
BO12246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4576-RA | 351..2378 | 17..2046 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:48:50 Download gff for
BO12246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15829548..15829888 | 1459..1799 | 100 | -> | Plus |
3R | 15829951..15830093 | 1800..1942 | 100 | -> | Plus |
3R | 15830165..15830266 | 1943..2046 | 98 | | Plus |
3R | 15828228..15828393 | 395..560 | 100 | -> | Plus |
3R | 15826097..15826178 | 17..98 | 100 | -> | Plus |
3R | 15827101..15827396 | 99..394 | 100 | -> | Plus |
3R | 15828522..15829225 | 561..1264 | 100 | -> | Plus |
3R | 15829290..15829483 | 1265..1458 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:20 Download gff for
BO12246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11655673..11655815 | 1800..1942 | 100 | -> | Plus |
arm_3R | 11655887..11655988 | 1943..2046 | 98 | | Plus |
arm_3R | 11655270..11655610 | 1459..1799 | 100 | -> | Plus |
arm_3R | 11651819..11651900 | 17..98 | 100 | -> | Plus |
arm_3R | 11652823..11653118 | 99..394 | 100 | -> | Plus |
arm_3R | 11653950..11654115 | 395..560 | 100 | -> | Plus |
arm_3R | 11654244..11654947 | 561..1264 | 100 | -> | Plus |
arm_3R | 11655012..11655205 | 1265..1458 | 100 | -> | Plus |
BO12246.pep Sequence
Translation from 16 to 2062
> BO12246.pep
MHPMTMMMLHIVILAATFTAAQCFQLNMTQFYEMPPLYDLDDYDRCLQEL
NGQASTYCFVRAEVQPDESVAAWRAIAEISQYDRHHFDHRQLYFGLCLRE
CEASLAGLNKSELEALQAGLLSENAKVNVYLDLFSMEANNRQRHQRLTNA
CLNWRLQRRGFGVLAKSVVEYCDEAGHQVEDDAWNLTFYGILGTLLVLAC
LGSLVDLHLKRSRHDKMLKERDHYKTPPKSTAQQVLLTFSVARNWYRLNQ
EPSGKIGRELRFLDCFKFFAMFMVIFAHTNWVIYESAISNPQDPERLLHT
AAGTLLVSGSLITVTFFVISGLLLTINWLAVSRSLESKKDTWSFGQYALL
FVKFNIFRYIRLTVPYAFVLLMSGVYFENAGGPLWRHIFEREQLACRRNW
WTNLLYVNNFVRTDERCLLQGWYLAADTHSFVLSLVLLMLGHRFVRWSKQ
LYAGILGLFVVVPMVLTYAMNYYPIFVPTPQTQKDSFIGDRQFTEFYTSS
FMNFGSYFCGVLAALVYDQLALKQYKLRELKSFQLLWFTLIPVGILWLFS
AHPIFQHYYVTPSAIWGALYAGLQRNIWGFGLGIFIVGMASKVGWIFRKF
CCLPIFRILGRLTYGAFIVHLLVARIVLATVREPIYFGTGMMFAFIFFTV
TVSYLCSFLLAIFLELPVSSFLKLMRASFLDH
BO12246.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:25:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4576-PA | 676 | CG4576-PA | 1..676 | 1..676 | 3577 | 100 | Plus |
CG9447-PC | 656 | CG9447-PC | 1..633 | 34..675 | 818 | 30.2 | Plus |
CG32645-PB | 853 | CG32645-PB | 409..847 | 223..678 | 329 | 24.6 | Plus |
CG14204-PB | 743 | CG14204-PB | 283..677 | 263..675 | 326 | 25.3 | Plus |
CG14204-PA | 743 | CG14204-PA | 283..677 | 263..675 | 326 | 25.3 | Plus |