Clone BO12246 Report

Search the DGRC for BO12246

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:122
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG4576-RA
Protein status:BO12246.pep:
Sequenced Size:2062

Clone Sequence Records

BO12246.3prime Sequence

891 bp (828 high quality bases) assembled on 2006-04-20

> BO12246.3prime
ATGGTCTAGAAAGCTTGCCCTCATAAGCTTGAGGAAGGAGGAGACGGGAA
GCTCCAGAAAGATGGCCAGCAAGAAGGAGCAGAGATAGGACACGGTCACC
GTAAAAAAGATGAAAGCAAACATCATGCCCGTGCCAAAATAAATGGGCTC
CCGCACTGTGGCCAAGACGATTCTCGCCACAAGAAGGTGGACGATAAAGG
CTCCATAAGTGAGGCGTCCCAAAATGCGGAAAATGGGCAAGCAGCAGAAC
TTACGGAAAATCCATCCCACTTTGCTGGCCATGCCCACGATGAAGATTCC
CAGCCCGAAGCCCCAGATGTTTCGCTGCAGGCCGGCATATAATGCTCCCC
AAATGGCCGACGGCGTCACGTAGTAGTGCTGGAAGATGGGATGAGCACTA
AACAGCCATAGAATCCCCACTGGAATAAGTGTAAACCAAAGAAGCTGGAA
GCTCTTTAACTCCCGTAGTTTGTATTGCTTCAATGCCAACTGATCGTAAA
CCAAAGCGGCCAGGACTCCACAGAAATAGCTACCGAAGTTCATAAAGGAC
GACGTGTAGAATTCGGTGAATTGACGATCTCCGATAAAGGAATCCTTCTG
GGTTTGTGGCGTGGGTACAAAAATGGGATAGTAGTTCATGGCATATGTGA
GCACCATTGGCACCACCACAAAAAGACCCAAAATGCCCGCATAGAGCTGT
TTGCTCCATCTGACGAACCGGTGACCCAGCATCAGCAGCACCAAGCTGAG
CACAAAGGAATGAGTATCCGCTGCCAAATACCAACCTTGGAGCAAGCACC
GCTCATCCGTGCGTACAAAGTTGTTGACGTAGAGCAGATTGGTCCACCAG
TTGCGTCGACAAGCCAACTGCTCCCGCTCAAAGATGTGCCG

BO12246.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4576-PA 2031 CG4576-RA 1156..2028 891..19 4340 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:36:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG4576-RA 2433 CG4576-RA 1506..2378 891..19 4350 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15829548..15829889 604..263 1710 100 Minus
3R 32079331 3R 15829289..15829483 799..605 960 99.5 Minus
3R 32079331 3R 15829951..15830093 263..121 715 100 Minus
3R 32079331 3R 15830164..15830266 121..19 515 100 Minus
3R 32079331 3R 15829133..15829225 891..799 465 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:36:30 has no hits.

BO12246.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:27 Download gff for BO12246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4576-PA 1156..2031 18..891 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:55 Download gff for BO12246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4576-PA 1156..2031 18..891 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:06:35 Download gff for BO12246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4576-RA 1506..2382 13..891 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:16:23 Download gff for BO12246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4576-RA 1506..2382 13..891 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:16:23 Download gff for BO12246.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15829133..15829225 799..891 100 -> Minus
3R 15829290..15829483 605..798 99 -> Minus
3R 15829548..15829888 264..604 100 -> Minus
3R 15829951..15830093 121..263 100 -> Minus
3R 15830165..15830270 13..120 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:06:35 Download gff for BO12246.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11654855..11654947 799..891 100 -> Minus
arm_3R 11655012..11655205 605..798 99 -> Minus
arm_3R 11655270..11655610 264..604 100 -> Minus
arm_3R 11655673..11655815 121..263 100 -> Minus
arm_3R 11655887..11655992 13..120 97   Minus

BO12246.5prime Sequence

868 bp (795 high quality bases) assembled on 2006-04-20

> BO12246.5prime
GAAGTTATCAGTCGACATGCATCCCATGACGATGATGATGCTTCACATCG
TGATTTTAGCAGCCACTTTTACGGCTGCGCAGTGTTTTCAATTGAACATG
ACGCAGTTCTATGAGATGCCTCCTCTATACGACTTGGATGACTATGATCG
TTGCCTCCAGGAATTGAATGGCCAGGCGTCCACTTACTGCTTCGTCCGCG
CGGAAGTCCAGCCCGATGAGTCTGTAGCGGCATGGCGGGCAATTGCAGAG
ATTTCGCAGTACGATCGCCATCACTTCGATCACCGACAGCTCTATTTCGG
TCTCTGCCTGCGCGAATGTGAGGCGTCTCTGGCCGGGTTGAATAAAAGCG
AACTGGAGGCCCTGCAAGCCGGCCTGCTATCGGAAAATGCAAAGGTGAAC
GTATATCTGGACTTGTTCTCGATGGAAGCCAATAACCGCCAACGGCACCA
GCGCTTGACAAATGCCTGCCTGAACTGGCGTCTGCAGCGTCGTGGATTCG
GGGTGCTGGCCAAGAGCGTGGTGGAGTACTGCGATGAGGCGGGACATCAA
GTGGAAGATGATGCGTGGAACCTGACCTTCTACGGAATCTTGGGCACTCT
ACTGGTTCTGGCTTGTCTGGGTAGCTTAGTGGATCTGCATCTAAAGCGAA
GCCGTCATGATAAAATGCTCAAGGAGCGAGATCACTACAAGACACCGCCC
AAGAGCACTGCCCAACAGGTGCTGCTCACCTTTTCGGTGGCCCGCAATTG
GTACCGACTTAATCAGGAGCCAAGTGGTAAGATCGGTCGCGAGCTGAGAT
TTCTCGACTGCTTCAAGTTCTTTGCCATGTTCATGGTGATATTTGCGCAC
ACCAACTGGGTGATTTAC

BO12246.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4576-PA 2031 CG4576-RA 1..852 17..868 4260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4576-RA 2433 CG4576-RA 351..1202 17..868 4260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:45:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15828521..15828829 560..868 1545 100 Plus
3R 32079331 3R 15827101..15827398 99..396 1490 100 Plus
3R 32079331 3R 15828226..15828393 393..560 840 100 Plus
3R 32079331 3R 15826097..15826178 17..98 410 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:45:57 has no hits.

BO12246.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:28 Download gff for BO12246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4576-PA 1..852 17..868 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:57 Download gff for BO12246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4576-PA 1..852 17..868 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:44:41 Download gff for BO12246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4576-RA 348..1202 12..868 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:09:28 Download gff for BO12246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4576-RA 348..1202 12..868 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:09:28 Download gff for BO12246.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15826094..15826178 12..98 97 -> Plus
3R 15827101..15827396 99..394 100 -> Plus
3R 15828228..15828393 395..560 100 -> Plus
3R 15828522..15828829 561..868 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:44:41 Download gff for BO12246.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11651816..11651900 12..98 97 -> Plus
arm_3R 11652823..11653118 99..394 100 -> Plus
arm_3R 11653950..11654115 395..560 100 -> Plus
arm_3R 11654244..11654551 561..868 100   Plus

BO12246.complete Sequence

2062 bp assembled on 2008-01-17

GenBank Submission: FJ632376

> BO12246.complete
GAAGTTATCAGTCGACATGCATCCCATGACGATGATGATGCTTCACATCG
TGATTTTAGCAGCCACTTTTACGGCTGCGCAGTGTTTTCAATTGAACATG
ACGCAGTTCTATGAGATGCCTCCTCTATACGACTTGGATGACTATGATCG
TTGCCTCCAGGAATTGAATGGCCAGGCGTCCACTTACTGCTTCGTCCGCG
CGGAAGTCCAGCCCGATGAGTCTGTAGCGGCATGGCGGGCAATTGCAGAG
ATTTCGCAGTACGATCGCCATCACTTCGATCACCGACAGCTCTATTTCGG
TCTCTGCCTGCGCGAATGTGAGGCGTCTCTGGCCGGGTTGAATAAAAGCG
AACTGGAGGCCCTGCAAGCCGGCCTGCTATCGGAAAATGCAAAGGTGAAC
GTATATCTGGACTTGTTCTCGATGGAAGCCAATAACCGCCAACGGCACCA
GCGCTTGACAAATGCCTGCCTGAACTGGCGTCTGCAGCGTCGTGGATTCG
GGGTGCTGGCCAAGAGCGTGGTGGAGTACTGCGATGAGGCGGGACATCAA
GTGGAAGATGATGCGTGGAACCTGACCTTCTACGGAATCTTGGGCACTCT
ACTGGTTCTGGCTTGTCTGGGTAGCTTAGTGGATCTGCATCTAAAGCGAA
GCCGTCATGATAAAATGCTCAAGGAGCGAGATCACTACAAGACACCGCCC
AAGAGCACTGCCCAACAGGTGCTGCTCACCTTTTCGGTGGCCCGCAATTG
GTACCGACTTAATCAGGAGCCAAGTGGTAAGATCGGTCGCGAGCTGAGAT
TTCTCGACTGCTTCAAGTTCTTTGCCATGTTCATGGTGATATTTGCGCAC
ACCAACTGGGTGATTTACGAGAGCGCCATCAGCAATCCGCAGGATCCGGA
GCGACTGCTTCACACGGCAGCTGGCACTTTACTCGTTTCGGGATCATTGA
TCACTGTGACCTTTTTTGTGATCAGTGGTTTGTTGCTTACCATTAACTGG
CTGGCCGTTTCACGTTCGCTAGAATCTAAAAAGGACACCTGGAGCTTCGG
CCAGTATGCTTTGCTATTTGTCAAGTTTAACATCTTCCGATACATCCGAC
TGACGGTTCCATATGCCTTTGTATTGCTCATGAGTGGCGTTTACTTTGAG
AACGCTGGAGGTCCACTGTGGCGGCACATCTTTGAGCGGGAGCAGTTGGC
TTGTCGACGCAACTGGTGGACCAATCTGCTCTACGTCAACAACTTTGTAC
GCACGGATGAGCGGTGCCTGCTCCAAGGTTGGTATTTGGCAGCGGATACT
CATTCCTTTGTGCTCAGCTTGGTGCTGCTGATGCTGGGTCACCGGTTCGT
CAGATGGAGCAAACAGCTCTATGCGGGCATTTTGGGTCTTTTTGTGGTGG
TGCCAATGGTGCTCACATATGCCATGAACTACTATCCCATTTTTGTACCC
ACGCCACAAACCCAGAAGGATTCCTTTATCGGAGATCGTCAATTCACCGA
ATTCTACACGTCGTCCTTTATGAACTTCGGTAGCTATTTCTGTGGAGTCC
TGGCCGCTTTGGTTTACGATCAGTTGGCATTGAAGCAATACAAACTACGG
GAGTTAAAGAGCTTCCAGCTTCTTTGGTTTACACTTATTCCAGTGGGGAT
TCTATGGCTGTTTAGTGCTCATCCCATCTTCCAGCACTACTACGTGACGC
CGTCGGCCATTTGGGGAGCATTATATGCCGGCCTGCAGCGAAACATCTGG
GGCTTCGGGCTGGGAATCTTCATCGTGGGCATGGCCAGCAAAGTGGGATG
GATTTTCCGTAAGTTCTGCTGCTTGCCCATTTTCCGCATTTTGGGACGCC
TCACTTATGGAGCCTTTATCGTCCACCTTCTTGTGGCGAGAATCGTCTTG
GCCACAGTGCGGGAGCCCATTTATTTTGGCACGGGCATGATGTTTGCTTT
CATCTTTTTTACGGTGACCGTGTCCTATCTCTGCTCCTTCTTGCTGGCCA
TCTTTCTGGAGCTTCCCGTCTCCTCCTTCCTCAAGCTTATGAGGGCAAGC
TTTCTAGACCAT

BO12246.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:34:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4576-RA 2031 CG4576-PA 1..2028 17..2044 10140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:35:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4576-RA 2433 CG4576-RA 351..2378 17..2044 10140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:34:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15828521..15829225 560..1264 3525 100 Plus
3R 32079331 3R 15829548..15829889 1459..1800 1710 100 Plus
3R 32079331 3R 15827101..15827398 99..396 1490 100 Plus
3R 32079331 3R 15829289..15829483 1264..1458 975 100 Plus
3R 32079331 3R 15828226..15828393 393..560 840 100 Plus
3R 32079331 3R 15829951..15830093 1800..1942 715 100 Plus
3R 32079331 3R 15830164..15830266 1942..2044 515 100 Plus
3R 32079331 3R 15826097..15826178 17..98 410 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:34:58 has no hits.

BO12246.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:06 Download gff for BO12246.complete
Subject Subject Range Query Range Percent Splice Strand
CG4576-RA 1..2031 17..2045 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:44 Download gff for BO12246.complete
Subject Subject Range Query Range Percent Splice Strand
CG4576-RA 349..2376 17..2046 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:20 Download gff for BO12246.complete
Subject Subject Range Query Range Percent Splice Strand
CG4576-RA 351..2378 17..2046 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:06 Download gff for BO12246.complete
Subject Subject Range Query Range Percent Splice Strand
CG4576-RA 346..2380 12..2050 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:48:50 Download gff for BO12246.complete
Subject Subject Range Query Range Percent Splice Strand
CG4576-RA 351..2378 17..2046 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:48:50 Download gff for BO12246.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15829548..15829888 1459..1799 100 -> Plus
3R 15829951..15830093 1800..1942 100 -> Plus
3R 15830165..15830266 1943..2046 98   Plus
3R 15828228..15828393 395..560 100 -> Plus
3R 15826097..15826178 17..98 100 -> Plus
3R 15827101..15827396 99..394 100 -> Plus
3R 15828522..15829225 561..1264 100 -> Plus
3R 15829290..15829483 1265..1458 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:20 Download gff for BO12246.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11655673..11655815 1800..1942 100 -> Plus
arm_3R 11655887..11655988 1943..2046 98   Plus
arm_3R 11655270..11655610 1459..1799 100 -> Plus
arm_3R 11651819..11651900 17..98 100 -> Plus
arm_3R 11652823..11653118 99..394 100 -> Plus
arm_3R 11653950..11654115 395..560 100 -> Plus
arm_3R 11654244..11654947 561..1264 100 -> Plus
arm_3R 11655012..11655205 1265..1458 100 -> Plus

BO12246.pep Sequence

Translation from 16 to 2062

> BO12246.pep
MHPMTMMMLHIVILAATFTAAQCFQLNMTQFYEMPPLYDLDDYDRCLQEL
NGQASTYCFVRAEVQPDESVAAWRAIAEISQYDRHHFDHRQLYFGLCLRE
CEASLAGLNKSELEALQAGLLSENAKVNVYLDLFSMEANNRQRHQRLTNA
CLNWRLQRRGFGVLAKSVVEYCDEAGHQVEDDAWNLTFYGILGTLLVLAC
LGSLVDLHLKRSRHDKMLKERDHYKTPPKSTAQQVLLTFSVARNWYRLNQ
EPSGKIGRELRFLDCFKFFAMFMVIFAHTNWVIYESAISNPQDPERLLHT
AAGTLLVSGSLITVTFFVISGLLLTINWLAVSRSLESKKDTWSFGQYALL
FVKFNIFRYIRLTVPYAFVLLMSGVYFENAGGPLWRHIFEREQLACRRNW
WTNLLYVNNFVRTDERCLLQGWYLAADTHSFVLSLVLLMLGHRFVRWSKQ
LYAGILGLFVVVPMVLTYAMNYYPIFVPTPQTQKDSFIGDRQFTEFYTSS
FMNFGSYFCGVLAALVYDQLALKQYKLRELKSFQLLWFTLIPVGILWLFS
AHPIFQHYYVTPSAIWGALYAGLQRNIWGFGLGIFIVGMASKVGWIFRKF
CCLPIFRILGRLTYGAFIVHLLVARIVLATVREPIYFGTGMMFAFIFFTV
TVSYLCSFLLAIFLELPVSSFLKLMRASFLDH

BO12246.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG4576-PA 676 CG4576-PA 1..676 1..676 3577 100 Plus
CG9447-PC 656 CG9447-PC 1..633 34..675 818 30.2 Plus
CG32645-PB 853 CG32645-PB 409..847 223..678 329 24.6 Plus
CG14204-PB 743 CG14204-PB 283..677 263..675 326 25.3 Plus
CG14204-PA 743 CG14204-PA 283..677 263..675 326 25.3 Plus