Clone BO12247 Report

Search the DGRC for BO12247

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:122
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG8170-RB
Protein status:BO12247.pep:
Sequenced Size:2368

Clone Sequence Records

BO12247.3prime Sequence

855 bp (776 high quality bases) assembled on 2006-04-20

> BO12247.3prime
ATGGTCTAGAAAGCTTGCGATGTTCATCGTGAGTCCGACGACGTAGGATA
CCCAGTCCACGGTCTTGCTGACGCTGTGATAGATTCCCGGCTGACCGCGG
GACGCGCAGGAGTAACCAGCAGAGACCACACCAATCAGGTACCAGCGCCC
ATTCTTGTCGTGCATCAAAGGTCCTCCAGAGTCGCCTTGGCACGAGTCCT
TGCCACCGTTGCGATAGCCCGCGCAGAGCATCTCCTGGTAGATGACCACG
TTGATGCCGTTCTGCCGGTGCCAGCGCTCGCAGATTCGGTTCTCGATCAC
GGGCACATCCACGGCCTGCAGCGTCTTGGGACGCAGCCGGGAGCCCGGGT
TCAGAGCTCCCCAGCCGGCTGCCCAGCCAAATTTGCCCAGGAAGTCCTCG
TTCTTCTCGGGCAGGCAAATCGGAGCTATGTGGGGCATGAAGTGCACGGT
ACGCTCTAGCGTCAGCACGGAGATGTCGAAGCGGTCCGCCTGCGGCGTGA
ACTTGAAGTACGGATGCACGTCGATCCGGCGGACTCCGAAGGTGTAGGCC
GGCAGTGGCTCCACGGCCGAGTTGATCACGTAATCACCCAGCGTGACATG
CACCTGTCGCGGAGTGGCCCGGGCCACACAATGACCAGCGGTGACCACGT
GTCGTCGCGAGATCAACGAACCTCCGCACCTGGAGGAACCGATGCGGATG
TAGGCCTGCCAGGGAAAGGAGCCGAAGCCCGCATCATCGCCGCCCACAAT
GCGCCGCTGGGCGGTCTGCTTGGCCAGCGAAATGCCGCAGCCTTTCTCCT
TGAACGTGCTCGCCGACTGCGGACTGCTAGTCCCCTCCGAGGCGCTGTCC
AAATC

BO12247.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG8170-PB 2337 CG8170-RB 1502..2334 851..19 4140 99.8 Minus
CG8170-PA 2568 CG8170-RA 1793..2565 791..19 3865 100 Minus
CG8170-PA 2568 CG8170-RA 1502..1561 851..792 275 98.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:49:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG8170-RB 3672 CG8170-RB 2432..3268 855..19 4155 99.8 Minus
CG8170-RA 3887 CG8170-RA 2711..3483 791..19 3865 100 Minus
CG8170-RA 3887 CG8170-RA 2416..2479 855..792 290 96.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9019603..9019901 129..427 1495 100 Plus
2R 25286936 2R 9020034..9020290 426..682 1285 100 Plus
2R 25286936 2R 9020351..9020467 677..793 585 100 Plus
2R 25286936 2R 9019436..9019549 19..132 570 100 Plus
2R 25286936 2R 9021727..9021791 791..855 295 96.9 Plus
Blast to na_te.dros performed on 2015-02-03 07:49:21 has no hits.

BO12247.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:29 Download gff for BO12247.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8170-PA 1498..2337 15..855 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:59 Download gff for BO12247.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8170-PB 1498..2337 15..855 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:34:33 Download gff for BO12247.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8170-RB 2432..3274 10..855 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:49:27 Download gff for BO12247.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8170-RB 2432..3274 10..855 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:49:27 Download gff for BO12247.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9019430..9019548 10..131 96 <- Plus
2R 9019606..9019899 132..425 100 <- Plus
2R 9020034..9020287 426..679 100 <- Plus
2R 9020354..9020465 680..791 100 <- Plus
2R 9021728..9021791 792..855 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:34:33 Download gff for BO12247.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4906935..4907053 10..131 96 <- Plus
arm_2R 4907111..4907404 132..425 100 <- Plus
arm_2R 4907539..4907792 426..679 100 <- Plus
arm_2R 4907859..4907970 680..791 100 <- Plus
arm_2R 4909233..4909296 792..855 96   Plus

BO12247.5prime Sequence

799 bp (754 high quality bases) assembled on 2006-04-20

> BO12247.5prime
GAAGTTATCAGTCGACATGTTAGTGGCCACCGACGAAAACAATACCAATA
CCACCACCGCCAGCCGGAGCACACGCAACACCTGGAGATGGAGCCGCCTG
GCGTTGGCCGTTAGTCTCTTCGCCTACTGCTGCTGCGCCTCATCCGCGGC
CACGCCCACCACCTCGGTGACCACGGCCGCCCTTCTCAGCGGCCACCAGC
TGCTGCCCTGGCAAACGGCGGCTGCGACGGCGGCCACCACGCCCTCCACC
GCCCGCAATCTGTATGCGCCACACCAGAGCTTCAGCCGACACGATGACAT
CAGCTTTAAGGATCTGCGCCAGCGCAGCGATGGCACGGTGGTGCAGTCCT
TTGGTTCCTATCGCACCGCTCGTCAGTTTGGTGGCTACTCAACCACTGCC
CAGCGGCGATCGGACCCCGCCGTAGAAATCATTCCAGCTCCGTCCGTGGA
ATTGCCGCAGGGTGAGCTGATCACGGTGCCCAAGCAGCTGGTGCCCACGA
TGCCGGAGAATGTGACTCGCCAGGGTCGGCGTCGCAACTACATGTACATA
CCGCTGCAGACGGAGGGGGAGAATGGATCCGCGGCGCTGCTACAACTGCG
TCCCAGTCGGAACGCCACGCTTTCCGCGCTGGGACCTCCGGCCGATGGAG
TGGCCGCAGTGGCCCATGAATTTGGCGCCGATCTGGCCACCCAGGGATCT
GGACCGGAGCAGCCACCGCTGGCATTGGAACTGGGTCCCGAGCGAACCGA
ACGCAGCGATCTTATGGCCGCCGCCAGCTCCACGGACAAGCTGGAGTAC

BO12247.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG8170-PA 2568 CG8170-RA 1..783 17..799 3890 99.8 Plus
CG8170-PB 2337 CG8170-RB 1..783 17..799 3890 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:13:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG8170-RB 3672 CG8170-RB 935..1717 17..799 3900 99.9 Plus
CG8170-RA 3887 CG8170-RA 919..1701 17..799 3900 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:13:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9022610..9023392 799..17 3900 99.9 Minus
Blast to na_te.dros performed on 2015-02-11 10:13:41 has no hits.

BO12247.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:30 Download gff for BO12247.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8170-PA 1..783 17..799 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:00 Download gff for BO12247.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8170-PB 1..783 17..799 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:53:48 Download gff for BO12247.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8170-RA 914..1701 11..799 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:22:11 Download gff for BO12247.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8170-RA 914..1701 11..799 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:22:11 Download gff for BO12247.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9022610..9023397 11..799 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:53:48 Download gff for BO12247.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4910115..4910902 11..799 99   Minus

BO12247.complete Sequence

2368 bp assembled on 2008-01-17

GenBank Submission: FJ632377

> BO12247.complete
GAAGTTATCAGTCGACATGTTAGTGGCCACCGACGAAAACAATACCAATA
CCACCACCGCCAGCCGGAGCACACGCAACACCTGGAGATGGAGCCGCCTG
GCGTTGGCCGTTAGTCTCTTCGCCTACTGCTGCTGCGCCTCATCCGCGGC
CACGCCCACCACCTCGGTGACCACGGCCGCCCTTCTCAGCGGCCACCAGC
TGCTGCCCTGGCAAACGGCGGCTGCGACGGCGGCCACCACGCCCTCCACC
GCCCGCAATCTGTATGCGCCACACCAGAGCTTCAGCCGACACGATGACAT
CAGCTTTAAGGATCTGCGCCAGCGCAGCGATGGCACGGTGGTGCAGTCCT
TTGGTTCCTATCGCACCGCTCGTCAGTTTGGTGGCTACTCAACCACTGCC
CAGCGGCGATCGGACCCCGCCGTAGAAATCATTCCAGCTCCGTCCGTGGA
ATTGCCGCAGGGTGAGCTGATCACGGTGCCCAAGCAGCTGGTGCCCACGA
TGCCGGAGAATGTGACTCGCCAGGGTCGGCGTCGCAACTACATGTACATA
CCGCTGCAGACGGAGGGGGAGAATGGATCCGCGGCGCTGCTACAACTGCG
TCCCAGTCGGAACGCCACGCTTTCCGCGCTGGGACCTCCGGCCGATGGAG
TGGCCGCAGTGGCCCATGAATTTGGCGCCGATCTGGCCACCCAGGGATCT
GGACCGGAGCAGCCACCGCTGGCATTGGAACTGGGTCCCGAGCGAACCGA
ACGCAGCGATCTTATGGCCGCCGCCAGCTCCACGGACAAGCTGGAGTACG
CCGAGCCGGAGAACACCAGTCGCCGTGTGGGCTTCCAATTTCCCAGCTAC
AGCCTAAAGCCCGCCAGTCCCTTCCATCCGCAGGCCTACCGCGAGGATAA
CCCCATATTTGGGGACACCAGTGCCGGAGGCTATGAGCCCCAGCCGTACA
GCGAAGATGCGTCTCCCGTTCCGCCACCCACGCAGTACGAGCAGCACGAG
ACGCGGCACACACGGCAGCTCTACTTTGATTCGGACACCGCGTCCTCCAG
CTTCGAGTTTCCCGGCCTGGTGAGCAACTCCAAGCCGCATGGCCTCAAGC
TCTATCGCGACGATGTGACCAAGTTCGGGGATATCAATGGACCGATCACC
GCGCTACCGCAGCAGCGACCCCAGCGAGGCTTCTACTTCGGCGACACTGA
GTTCCGCACTGGTCCTCCTGCTCCGGTCCGCCAGTTTGGGCCGCAAAAGA
ACTTCCAGGAGTACGTGGGACCCAGCGAGTACCAGGGTACCCGGAAGAGC
CGCTACTATCCCTACAAGTCGTCGCGCAGTCCGAGGGTCGTCTTCCCCAC
CAACGACAACGTGGGCACCACCGGACCCAGTGGACCCGCCGGCAGCAGCG
GACCCTCCGGAAACGGAGTCTACTTCAGCGATAACATTGCTTTCAGGGAC
CAGAACTTCGGCATCAACGAATTGGCCGCCGTTCAGGATGTGCGCAATGA
CTACAGTCTGCAGGATCTGGACAGCGCCTCGGAGGCGACTAGCAGTCCGC
AGTCGGCGAGCACGTTCAAGGAGAAAGGCTGCGGCATTTCGCTGGCCAAG
CAGACCGCCCAGCGGCGCATTGTGGGCGGCGATGATGCGGGCTTCGGCTC
CTTTCCCTGGCAGGCCTACATCCGCATCGGTTCCTCCAGGTGCGGAGGTT
CGTTGATCTCGCGACGACACGTGGTCACCGCTGGTCATTGTGTGGCCCGG
GCCACTCCGCGACAGGTGCATGTCACGCTGGGTGATTACGTGATCAACTC
GGCCGTGGAGCCACTGCCGGCCTACACCTTCGGAGTCCGCCGGATCGACG
TGCATCCGTACTTCAAGTTCACGCCGCAGGCGGACCGCTTCGACATCTCC
GTGCTGACGCTAGAGCGTACCGTGCACTTCATGCCCCACATAGCTCCGAT
TTGCCTGCCCGAGAAGAACGAGGACTTCCTGGGCAAATTTGGCTGGGCAG
CCGGCTGGGGAGCTCTGAACCCGGGCTCCCGGCTGCGTCCCAAGACGCTG
CAGGCCGTGGATGTGCCCGTGATCGAGAACCGAATCTGCGAGCGCTGGCA
CCGGCAGAACGGCATCAACGTGGTCATCTACCAGGAGATGCTCTGCGCGG
GCTATCGCAACGGTGGCAAGGACTCGTGCCAAGGCGACTCTGGAGGACCT
TTGATGCACGACAAGAATGGGCGCTGGTACCTGATTGGTGTGGTCTCTGC
TGGTTACTCCTGCGCGTCCCGCGGTCAGCCGGGAATCTATCACAGCGTCA
GCAAGACCGTGGACTGGGTATCCTACGTCGTCGGACTCACGATGAACATC
GCAAGCTTTCTAGACCAT

BO12247.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG8170-RB 2337 CG8170-PB 1..2334 17..2350 11655 100 Plus
CG8170-RA 2568 CG8170-PA 1..1561 17..1577 7790 99.9 Plus
CG8170-RA 2568 CG8170-PA 1793..2565 1578..2350 3865 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8170-RB 3672 CG8170-RB 935..3268 17..2350 11655 100 Plus
CG8170-RA 3887 CG8170-RA 919..2479 17..1577 7790 99.9 Plus
CG8170-RA 3887 CG8170-RA 2711..3483 1578..2350 3865 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9021962..9023392 1447..17 7140 99.9 Minus
2R 25286936 2R 9019603..9019901 2240..1942 1495 100 Minus
2R 25286936 2R 9020034..9020290 1943..1687 1285 100 Minus
2R 25286936 2R 9021727..9021861 1578..1444 675 100 Minus
2R 25286936 2R 9020351..9020467 1692..1576 585 100 Minus
2R 25286936 2R 9019436..9019549 2350..2237 570 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:05:13 has no hits.

BO12247.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:07 Download gff for BO12247.complete
Subject Subject Range Query Range Percent Splice Strand
CG8170-RB 1..2337 17..2354 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:37:15 Download gff for BO12247.complete
Subject Subject Range Query Range Percent Splice Strand
CG8170-RB 920..3248 22..2352 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:44:32 Download gff for BO12247.complete
Subject Subject Range Query Range Percent Splice Strand
CG8170-RB 940..3268 22..2352 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:08 Download gff for BO12247.complete
Subject Subject Range Query Range Percent Splice Strand
CG8170-RB 910..3254 11..2359 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:18:11 Download gff for BO12247.complete
Subject Subject Range Query Range Percent Splice Strand
CG8170-RB 940..3268 22..2352 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:18:11 Download gff for BO12247.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9020034..9020287 1690..1943 100 <- Minus
2R 9020354..9020465 1578..1689 100 <- Minus
2R 9019434..9019548 2238..2352 98 <- Minus
2R 9019606..9019899 1944..2237 100 <- Minus
2R 9021728..9021858 1447..1577 100 <- Minus
2R 9021963..9023387 22..1446 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:44:32 Download gff for BO12247.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4906939..4907053 2238..2352 98 <- Minus
arm_2R 4907111..4907404 1944..2237 100 <- Minus
arm_2R 4907539..4907792 1690..1943 100 <- Minus
arm_2R 4907859..4907970 1578..1689 100 <- Minus
arm_2R 4909233..4909363 1447..1577 100 <- Minus
arm_2R 4909468..4910892 22..1446 99   Minus

BO12247.pep Sequence

Translation from 16 to 2368

> BO12247.pep
MLVATDENNTNTTTASRSTRNTWRWSRLALAVSLFAYCCCASSAATPTTS
VTTAALLSGHQLLPWQTAAATAATTPSTARNLYAPHQSFSRHDDISFKDL
RQRSDGTVVQSFGSYRTARQFGGYSTTAQRRSDPAVEIIPAPSVELPQGE
LITVPKQLVPTMPENVTRQGRRRNYMYIPLQTEGENGSAALLQLRPSRNA
TLSALGPPADGVAAVAHEFGADLATQGSGPEQPPLALELGPERTERSDLM
AAASSTDKLEYAEPENTSRRVGFQFPSYSLKPASPFHPQAYREDNPIFGD
TSAGGYEPQPYSEDASPVPPPTQYEQHETRHTRQLYFDSDTASSSFEFPG
LVSNSKPHGLKLYRDDVTKFGDINGPITALPQQRPQRGFYFGDTEFRTGP
PAPVRQFGPQKNFQEYVGPSEYQGTRKSRYYPYKSSRSPRVVFPTNDNVG
TTGPSGPAGSSGPSGNGVYFSDNIAFRDQNFGINELAAVQDVRNDYSLQD
LDSASEATSSPQSASTFKEKGCGISLAKQTAQRRIVGGDDAGFGSFPWQA
YIRIGSSRCGGSLISRRHVVTAGHCVARATPRQVHVTLGDYVINSAVEPL
PAYTFGVRRIDVHPYFKFTPQADRFDISVLTLERTVHFMPHIAPICLPEK
NEDFLGKFGWAAGWGALNPGSRLRPKTLQAVDVPVIENRICERWHRQNGI
NVVIYQEMLCAGYRNGGKDSCQGDSGGPLMHDKNGRWYLIGVVSAGYSCA
SRGQPGIYHSVSKTVDWVSYVVGLTMNIASFLDH

BO12247.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8170-PB 778 CG8170-PB 1..778 1..778 4131 100 Plus
CG8170-PA 855 CG8170-PA 1..855 1..778 3704 85 Plus
CG13744-PA 389 CG13744-PA 128..384 522..772 539 44 Plus
CG8172-PD 371 CG8172-PD 96..366 501..772 521 40.4 Plus
CG8172-PE 545 CG8172-PE 165..540 419..772 519 35.1 Plus