Clone Sequence Records
BO12247.3prime Sequence
855 bp (776 high quality bases) assembled on 2006-04-20
> BO12247.3prime
ATGGTCTAGAAAGCTTGCGATGTTCATCGTGAGTCCGACGACGTAGGATA
CCCAGTCCACGGTCTTGCTGACGCTGTGATAGATTCCCGGCTGACCGCGG
GACGCGCAGGAGTAACCAGCAGAGACCACACCAATCAGGTACCAGCGCCC
ATTCTTGTCGTGCATCAAAGGTCCTCCAGAGTCGCCTTGGCACGAGTCCT
TGCCACCGTTGCGATAGCCCGCGCAGAGCATCTCCTGGTAGATGACCACG
TTGATGCCGTTCTGCCGGTGCCAGCGCTCGCAGATTCGGTTCTCGATCAC
GGGCACATCCACGGCCTGCAGCGTCTTGGGACGCAGCCGGGAGCCCGGGT
TCAGAGCTCCCCAGCCGGCTGCCCAGCCAAATTTGCCCAGGAAGTCCTCG
TTCTTCTCGGGCAGGCAAATCGGAGCTATGTGGGGCATGAAGTGCACGGT
ACGCTCTAGCGTCAGCACGGAGATGTCGAAGCGGTCCGCCTGCGGCGTGA
ACTTGAAGTACGGATGCACGTCGATCCGGCGGACTCCGAAGGTGTAGGCC
GGCAGTGGCTCCACGGCCGAGTTGATCACGTAATCACCCAGCGTGACATG
CACCTGTCGCGGAGTGGCCCGGGCCACACAATGACCAGCGGTGACCACGT
GTCGTCGCGAGATCAACGAACCTCCGCACCTGGAGGAACCGATGCGGATG
TAGGCCTGCCAGGGAAAGGAGCCGAAGCCCGCATCATCGCCGCCCACAAT
GCGCCGCTGGGCGGTCTGCTTGGCCAGCGAAATGCCGCAGCCTTTCTCCT
TGAACGTGCTCGCCGACTGCGGACTGCTAGTCCCCTCCGAGGCGCTGTCC
AAATC
BO12247.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8170-PB | 2337 | CG8170-RB | 1502..2334 | 851..19 | 4140 | 99.8 | Minus |
CG8170-PA | 2568 | CG8170-RA | 1793..2565 | 791..19 | 3865 | 100 | Minus |
CG8170-PA | 2568 | CG8170-RA | 1502..1561 | 851..792 | 275 | 98.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:49:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8170-RB | 3672 | CG8170-RB | 2432..3268 | 855..19 | 4155 | 99.8 | Minus |
CG8170-RA | 3887 | CG8170-RA | 2711..3483 | 791..19 | 3865 | 100 | Minus |
CG8170-RA | 3887 | CG8170-RA | 2416..2479 | 855..792 | 290 | 96.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:49:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9019603..9019901 | 129..427 | 1495 | 100 | Plus |
2R | 25286936 | 2R | 9020034..9020290 | 426..682 | 1285 | 100 | Plus |
2R | 25286936 | 2R | 9020351..9020467 | 677..793 | 585 | 100 | Plus |
2R | 25286936 | 2R | 9019436..9019549 | 19..132 | 570 | 100 | Plus |
2R | 25286936 | 2R | 9021727..9021791 | 791..855 | 295 | 96.9 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:49:21 has no hits.
BO12247.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:29 Download gff for
BO12247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8170-PA | 1498..2337 | 15..855 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:59 Download gff for
BO12247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8170-PB | 1498..2337 | 15..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:34:33 Download gff for
BO12247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8170-RB | 2432..3274 | 10..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:49:27 Download gff for
BO12247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8170-RB | 2432..3274 | 10..855 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:49:27 Download gff for
BO12247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9019430..9019548 | 10..131 | 96 | <- | Plus |
2R | 9019606..9019899 | 132..425 | 100 | <- | Plus |
2R | 9020034..9020287 | 426..679 | 100 | <- | Plus |
2R | 9020354..9020465 | 680..791 | 100 | <- | Plus |
2R | 9021728..9021791 | 792..855 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:34:33 Download gff for
BO12247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4906935..4907053 | 10..131 | 96 | <- | Plus |
arm_2R | 4907111..4907404 | 132..425 | 100 | <- | Plus |
arm_2R | 4907539..4907792 | 426..679 | 100 | <- | Plus |
arm_2R | 4907859..4907970 | 680..791 | 100 | <- | Plus |
arm_2R | 4909233..4909296 | 792..855 | 96 | | Plus |
BO12247.5prime Sequence
799 bp (754 high quality bases) assembled on 2006-04-20
> BO12247.5prime
GAAGTTATCAGTCGACATGTTAGTGGCCACCGACGAAAACAATACCAATA
CCACCACCGCCAGCCGGAGCACACGCAACACCTGGAGATGGAGCCGCCTG
GCGTTGGCCGTTAGTCTCTTCGCCTACTGCTGCTGCGCCTCATCCGCGGC
CACGCCCACCACCTCGGTGACCACGGCCGCCCTTCTCAGCGGCCACCAGC
TGCTGCCCTGGCAAACGGCGGCTGCGACGGCGGCCACCACGCCCTCCACC
GCCCGCAATCTGTATGCGCCACACCAGAGCTTCAGCCGACACGATGACAT
CAGCTTTAAGGATCTGCGCCAGCGCAGCGATGGCACGGTGGTGCAGTCCT
TTGGTTCCTATCGCACCGCTCGTCAGTTTGGTGGCTACTCAACCACTGCC
CAGCGGCGATCGGACCCCGCCGTAGAAATCATTCCAGCTCCGTCCGTGGA
ATTGCCGCAGGGTGAGCTGATCACGGTGCCCAAGCAGCTGGTGCCCACGA
TGCCGGAGAATGTGACTCGCCAGGGTCGGCGTCGCAACTACATGTACATA
CCGCTGCAGACGGAGGGGGAGAATGGATCCGCGGCGCTGCTACAACTGCG
TCCCAGTCGGAACGCCACGCTTTCCGCGCTGGGACCTCCGGCCGATGGAG
TGGCCGCAGTGGCCCATGAATTTGGCGCCGATCTGGCCACCCAGGGATCT
GGACCGGAGCAGCCACCGCTGGCATTGGAACTGGGTCCCGAGCGAACCGA
ACGCAGCGATCTTATGGCCGCCGCCAGCTCCACGGACAAGCTGGAGTAC
BO12247.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8170-PA | 2568 | CG8170-RA | 1..783 | 17..799 | 3890 | 99.8 | Plus |
CG8170-PB | 2337 | CG8170-RB | 1..783 | 17..799 | 3890 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:13:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8170-RB | 3672 | CG8170-RB | 935..1717 | 17..799 | 3900 | 99.9 | Plus |
CG8170-RA | 3887 | CG8170-RA | 919..1701 | 17..799 | 3900 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:13:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9022610..9023392 | 799..17 | 3900 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:13:41 has no hits.
BO12247.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:30 Download gff for
BO12247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8170-PA | 1..783 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:00 Download gff for
BO12247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8170-PB | 1..783 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:53:48 Download gff for
BO12247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8170-RA | 914..1701 | 11..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:22:11 Download gff for
BO12247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8170-RA | 914..1701 | 11..799 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:22:11 Download gff for
BO12247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9022610..9023397 | 11..799 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:53:48 Download gff for
BO12247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4910115..4910902 | 11..799 | 99 | | Minus |
BO12247.complete Sequence
2368 bp assembled on 2008-01-17
GenBank Submission: FJ632377
> BO12247.complete
GAAGTTATCAGTCGACATGTTAGTGGCCACCGACGAAAACAATACCAATA
CCACCACCGCCAGCCGGAGCACACGCAACACCTGGAGATGGAGCCGCCTG
GCGTTGGCCGTTAGTCTCTTCGCCTACTGCTGCTGCGCCTCATCCGCGGC
CACGCCCACCACCTCGGTGACCACGGCCGCCCTTCTCAGCGGCCACCAGC
TGCTGCCCTGGCAAACGGCGGCTGCGACGGCGGCCACCACGCCCTCCACC
GCCCGCAATCTGTATGCGCCACACCAGAGCTTCAGCCGACACGATGACAT
CAGCTTTAAGGATCTGCGCCAGCGCAGCGATGGCACGGTGGTGCAGTCCT
TTGGTTCCTATCGCACCGCTCGTCAGTTTGGTGGCTACTCAACCACTGCC
CAGCGGCGATCGGACCCCGCCGTAGAAATCATTCCAGCTCCGTCCGTGGA
ATTGCCGCAGGGTGAGCTGATCACGGTGCCCAAGCAGCTGGTGCCCACGA
TGCCGGAGAATGTGACTCGCCAGGGTCGGCGTCGCAACTACATGTACATA
CCGCTGCAGACGGAGGGGGAGAATGGATCCGCGGCGCTGCTACAACTGCG
TCCCAGTCGGAACGCCACGCTTTCCGCGCTGGGACCTCCGGCCGATGGAG
TGGCCGCAGTGGCCCATGAATTTGGCGCCGATCTGGCCACCCAGGGATCT
GGACCGGAGCAGCCACCGCTGGCATTGGAACTGGGTCCCGAGCGAACCGA
ACGCAGCGATCTTATGGCCGCCGCCAGCTCCACGGACAAGCTGGAGTACG
CCGAGCCGGAGAACACCAGTCGCCGTGTGGGCTTCCAATTTCCCAGCTAC
AGCCTAAAGCCCGCCAGTCCCTTCCATCCGCAGGCCTACCGCGAGGATAA
CCCCATATTTGGGGACACCAGTGCCGGAGGCTATGAGCCCCAGCCGTACA
GCGAAGATGCGTCTCCCGTTCCGCCACCCACGCAGTACGAGCAGCACGAG
ACGCGGCACACACGGCAGCTCTACTTTGATTCGGACACCGCGTCCTCCAG
CTTCGAGTTTCCCGGCCTGGTGAGCAACTCCAAGCCGCATGGCCTCAAGC
TCTATCGCGACGATGTGACCAAGTTCGGGGATATCAATGGACCGATCACC
GCGCTACCGCAGCAGCGACCCCAGCGAGGCTTCTACTTCGGCGACACTGA
GTTCCGCACTGGTCCTCCTGCTCCGGTCCGCCAGTTTGGGCCGCAAAAGA
ACTTCCAGGAGTACGTGGGACCCAGCGAGTACCAGGGTACCCGGAAGAGC
CGCTACTATCCCTACAAGTCGTCGCGCAGTCCGAGGGTCGTCTTCCCCAC
CAACGACAACGTGGGCACCACCGGACCCAGTGGACCCGCCGGCAGCAGCG
GACCCTCCGGAAACGGAGTCTACTTCAGCGATAACATTGCTTTCAGGGAC
CAGAACTTCGGCATCAACGAATTGGCCGCCGTTCAGGATGTGCGCAATGA
CTACAGTCTGCAGGATCTGGACAGCGCCTCGGAGGCGACTAGCAGTCCGC
AGTCGGCGAGCACGTTCAAGGAGAAAGGCTGCGGCATTTCGCTGGCCAAG
CAGACCGCCCAGCGGCGCATTGTGGGCGGCGATGATGCGGGCTTCGGCTC
CTTTCCCTGGCAGGCCTACATCCGCATCGGTTCCTCCAGGTGCGGAGGTT
CGTTGATCTCGCGACGACACGTGGTCACCGCTGGTCATTGTGTGGCCCGG
GCCACTCCGCGACAGGTGCATGTCACGCTGGGTGATTACGTGATCAACTC
GGCCGTGGAGCCACTGCCGGCCTACACCTTCGGAGTCCGCCGGATCGACG
TGCATCCGTACTTCAAGTTCACGCCGCAGGCGGACCGCTTCGACATCTCC
GTGCTGACGCTAGAGCGTACCGTGCACTTCATGCCCCACATAGCTCCGAT
TTGCCTGCCCGAGAAGAACGAGGACTTCCTGGGCAAATTTGGCTGGGCAG
CCGGCTGGGGAGCTCTGAACCCGGGCTCCCGGCTGCGTCCCAAGACGCTG
CAGGCCGTGGATGTGCCCGTGATCGAGAACCGAATCTGCGAGCGCTGGCA
CCGGCAGAACGGCATCAACGTGGTCATCTACCAGGAGATGCTCTGCGCGG
GCTATCGCAACGGTGGCAAGGACTCGTGCCAAGGCGACTCTGGAGGACCT
TTGATGCACGACAAGAATGGGCGCTGGTACCTGATTGGTGTGGTCTCTGC
TGGTTACTCCTGCGCGTCCCGCGGTCAGCCGGGAATCTATCACAGCGTCA
GCAAGACCGTGGACTGGGTATCCTACGTCGTCGGACTCACGATGAACATC
GCAAGCTTTCTAGACCAT
BO12247.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:05:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8170-RB | 2337 | CG8170-PB | 1..2334 | 17..2350 | 11655 | 100 | Plus |
CG8170-RA | 2568 | CG8170-PA | 1..1561 | 17..1577 | 7790 | 99.9 | Plus |
CG8170-RA | 2568 | CG8170-PA | 1793..2565 | 1578..2350 | 3865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8170-RB | 3672 | CG8170-RB | 935..3268 | 17..2350 | 11655 | 100 | Plus |
CG8170-RA | 3887 | CG8170-RA | 919..2479 | 17..1577 | 7790 | 99.9 | Plus |
CG8170-RA | 3887 | CG8170-RA | 2711..3483 | 1578..2350 | 3865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9021962..9023392 | 1447..17 | 7140 | 99.9 | Minus |
2R | 25286936 | 2R | 9019603..9019901 | 2240..1942 | 1495 | 100 | Minus |
2R | 25286936 | 2R | 9020034..9020290 | 1943..1687 | 1285 | 100 | Minus |
2R | 25286936 | 2R | 9021727..9021861 | 1578..1444 | 675 | 100 | Minus |
2R | 25286936 | 2R | 9020351..9020467 | 1692..1576 | 585 | 100 | Minus |
2R | 25286936 | 2R | 9019436..9019549 | 2350..2237 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:05:13 has no hits.
BO12247.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:07 Download gff for
BO12247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8170-RB | 1..2337 | 17..2354 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:37:15 Download gff for
BO12247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8170-RB | 920..3248 | 22..2352 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:44:32 Download gff for
BO12247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8170-RB | 940..3268 | 22..2352 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:08 Download gff for
BO12247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8170-RB | 910..3254 | 11..2359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:18:11 Download gff for
BO12247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8170-RB | 940..3268 | 22..2352 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:18:11 Download gff for
BO12247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9020034..9020287 | 1690..1943 | 100 | <- | Minus |
2R | 9020354..9020465 | 1578..1689 | 100 | <- | Minus |
2R | 9019434..9019548 | 2238..2352 | 98 | <- | Minus |
2R | 9019606..9019899 | 1944..2237 | 100 | <- | Minus |
2R | 9021728..9021858 | 1447..1577 | 100 | <- | Minus |
2R | 9021963..9023387 | 22..1446 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:44:32 Download gff for
BO12247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4906939..4907053 | 2238..2352 | 98 | <- | Minus |
arm_2R | 4907111..4907404 | 1944..2237 | 100 | <- | Minus |
arm_2R | 4907539..4907792 | 1690..1943 | 100 | <- | Minus |
arm_2R | 4907859..4907970 | 1578..1689 | 100 | <- | Minus |
arm_2R | 4909233..4909363 | 1447..1577 | 100 | <- | Minus |
arm_2R | 4909468..4910892 | 22..1446 | 99 | | Minus |
BO12247.pep Sequence
Translation from 16 to 2368
> BO12247.pep
MLVATDENNTNTTTASRSTRNTWRWSRLALAVSLFAYCCCASSAATPTTS
VTTAALLSGHQLLPWQTAAATAATTPSTARNLYAPHQSFSRHDDISFKDL
RQRSDGTVVQSFGSYRTARQFGGYSTTAQRRSDPAVEIIPAPSVELPQGE
LITVPKQLVPTMPENVTRQGRRRNYMYIPLQTEGENGSAALLQLRPSRNA
TLSALGPPADGVAAVAHEFGADLATQGSGPEQPPLALELGPERTERSDLM
AAASSTDKLEYAEPENTSRRVGFQFPSYSLKPASPFHPQAYREDNPIFGD
TSAGGYEPQPYSEDASPVPPPTQYEQHETRHTRQLYFDSDTASSSFEFPG
LVSNSKPHGLKLYRDDVTKFGDINGPITALPQQRPQRGFYFGDTEFRTGP
PAPVRQFGPQKNFQEYVGPSEYQGTRKSRYYPYKSSRSPRVVFPTNDNVG
TTGPSGPAGSSGPSGNGVYFSDNIAFRDQNFGINELAAVQDVRNDYSLQD
LDSASEATSSPQSASTFKEKGCGISLAKQTAQRRIVGGDDAGFGSFPWQA
YIRIGSSRCGGSLISRRHVVTAGHCVARATPRQVHVTLGDYVINSAVEPL
PAYTFGVRRIDVHPYFKFTPQADRFDISVLTLERTVHFMPHIAPICLPEK
NEDFLGKFGWAAGWGALNPGSRLRPKTLQAVDVPVIENRICERWHRQNGI
NVVIYQEMLCAGYRNGGKDSCQGDSGGPLMHDKNGRWYLIGVVSAGYSCA
SRGQPGIYHSVSKTVDWVSYVVGLTMNIASFLDH
BO12247.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:25:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8170-PB | 778 | CG8170-PB | 1..778 | 1..778 | 4131 | 100 | Plus |
CG8170-PA | 855 | CG8170-PA | 1..855 | 1..778 | 3704 | 85 | Plus |
CG13744-PA | 389 | CG13744-PA | 128..384 | 522..772 | 539 | 44 | Plus |
CG8172-PD | 371 | CG8172-PD | 96..366 | 501..772 | 521 | 40.4 | Plus |
CG8172-PE | 545 | CG8172-PE | 165..540 | 419..772 | 519 | 35.1 | Plus |