Clone Sequence Records
BO12248.5prime Sequence
503 bp (502 high quality bases) assembled on 2006-04-20
> BO12248.5prime
GAAGTTATCAGTCGACATGTCCTTCGTTAAGAACGCCCGTTTGCTGGCCG
CCCGCGGCGCTCGCTTGGCCCAGAACCGCAGCTACTCGGATGAGATGAAG
CTGACCTTCGCCGCCGCCAACAAAACCTTCTACGATGCCGCTGTGGTGCG
CCAAATCGATGTGCCTTCCTTCTCGGGATCCTTCGGCATCCTGGCCAAGC
ACGTGCCCACTCTGGCTGTCCTGAAGCCCGGCGTTGTCCAGGTGGTGGAA
AACGATGGCAAGACCCTCAAGTTCTTCGTCTCCAGCGGTTCCGTCACCGT
CAACGAGGATTCCTCCGTTCAGGTTCTGGCCGAGGAGGCCCACAACATCG
AGGACATCGATGCCAATGAGGCGCGCCAGCTGCTCGCGAAATACCAGTCA
CAGCTTAGCTCCGCTGGCGACGACAAGGCCAAGGCCCAGGCTGCCATTGC
CGTGGAGGTCGCCGAAGCGTTAGTCAAGGCTGCCGAAGCAAGCTTTCTAG
ACC
BO12248.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2968-PA | 474 | l(1)G0230-RA | 1..471 | 17..487 | 2355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:20:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0230-RC | 3817 | CG2968-RC | 112..582 | 17..487 | 2355 | 100 | Plus |
l(1)G0230-RB | 978 | CG2968-RB | 112..582 | 17..487 | 2355 | 100 | Plus |
l(1)G0230-RA | 666 | CG2968-RA | 112..582 | 17..487 | 2355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:20:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10213559..10213772 | 215..428 | 1070 | 100 | Plus |
X | 23542271 | X | 10213287..10213485 | 17..215 | 995 | 100 | Plus |
X | 23542271 | X | 10214097..10214158 | 426..487 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:20:56 has no hits.
BO12248.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:30 Download gff for
BO12248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2968-PA | 1..474 | 17..488 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:02 Download gff for
BO12248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2968-PA | 1..474 | 17..488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:22:24 Download gff for
BO12248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0230-RA | 103..582 | 9..487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:28:30 Download gff for
BO12248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0230-RA | 103..582 | 9..487 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:28:30 Download gff for
BO12248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10213278..10213485 | 9..215 | 98 | -> | Plus |
X | 10213560..10213771 | 216..427 | 100 | -> | Plus |
X | 10214099..10214158 | 428..487 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:22:24 Download gff for
BO12248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10107311..10107518 | 9..215 | 98 | -> | Plus |
arm_X | 10107593..10107804 | 216..427 | 100 | -> | Plus |
arm_X | 10108132..10108191 | 428..487 | 100 | | Plus |
BO12248.complete Sequence
505 bp assembled on 2007-10-29
GenBank Submission: FJ632378
> BO12248.complete
GAAGTTATCAGTCGACATGTCCTTCGTTAAGAACGCCCGTTTGCTGGCCG
CCCGCGGCGCTCGCTTGGCCCAGAACCGCAGCTACTCGGATGAGATGAAG
CTGACCTTCGCCGCCGCCAACAAAACCTTCTACGATGCCGCTGTGGTGCG
CCAAATCGATGTGCCTTCCTTCTCGGGATCCTTCGGCATCCTGGCCAAGC
ACGTGCCCACTCTGGCTGTCCTGAAGCCCGGCGTTGTCCAGGTGGTGGAA
AACGATGGCAAGACCCTCAAGTTCTTCGTCTCCAGCGGTTCCGTCACCGT
CAACGAGGATTCCTCCGTTCAGGTTCTGGCCGAGGAGGCCCACAACATCG
AGGACATCGATGCCAATGAGGCGCGCCAGCTGCTCGCGAAATACCAGTCA
CAGCTTAGCTCCGCTGGCGACGACAAGGCCAAGGCCCAGGCTGCCATTGC
CGTGGAGGTCGCCGAAGCGTTAGTCAAGGCTGCCGAAGCAAGCTTTCTAG
ACCAT
BO12248.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:00:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0230-RC | 474 | CG2968-PC | 1..471 | 17..487 | 2355 | 100 | Plus |
l(1)G0230-RB | 474 | CG2968-PB | 1..471 | 17..487 | 2355 | 100 | Plus |
l(1)G0230-RA | 474 | CG2968-PA | 1..471 | 17..487 | 2355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:00:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0230-RC | 3817 | CG2968-RC | 112..582 | 17..487 | 2355 | 100 | Plus |
l(1)G0230-RB | 978 | CG2968-RB | 112..582 | 17..487 | 2355 | 100 | Plus |
l(1)G0230-RA | 666 | CG2968-RA | 112..582 | 17..487 | 2355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:00:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10213559..10213772 | 215..428 | 1070 | 100 | Plus |
X | 23542271 | X | 10213287..10213485 | 17..215 | 995 | 100 | Plus |
X | 23542271 | X | 10214097..10214158 | 426..487 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:00:02 has no hits.
BO12248.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:08 Download gff for
BO12248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0230-RA | 1..474 | 17..488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:01:08 Download gff for
BO12248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0230-RA | 101..580 | 9..487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:42 Download gff for
BO12248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0230-RA | 112..582 | 17..489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:44:45 Download gff for
BO12248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0230-RA | 110..580 | 17..489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:57 Download gff for
BO12248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0230-RA | 112..582 | 17..489 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:57 Download gff for
BO12248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10213287..10213485 | 17..215 | 100 | -> | Plus |
X | 10213560..10213771 | 216..427 | 100 | -> | Plus |
X | 10214099..10214158 | 428..489 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:42 Download gff for
BO12248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10107320..10107518 | 17..215 | 100 | -> | Plus |
arm_X | 10107593..10107804 | 216..427 | 100 | -> | Plus |
arm_X | 10108132..10108191 | 428..489 | 96 | | Plus |
BO12248.pep Sequence
Translation from 16 to 505
> BO12248.pep
MSFVKNARLLAARGARLAQNRSYSDEMKLTFAAANKTFYDAAVVRQIDVP
SFSGSFGILAKHVPTLAVLKPGVVQVVENDGKTLKFFVSSGSVTVNEDSS
VQVLAEEAHNIEDIDANEARQLLAKYQSQLSSAGDDKAKAQAAIAVEVAE
ALVKAAEASFLDH
BO12248.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0230-PC | 157 | CG2968-PC | 1..157 | 1..157 | 756 | 100 | Plus |
l(1)G0230-PB | 157 | CG2968-PB | 1..157 | 1..157 | 756 | 100 | Plus |
l(1)G0230-PA | 157 | CG2968-PA | 1..157 | 1..157 | 756 | 100 | Plus |