Clone Sequence Records
BO12252.3prime Sequence
852 bp (798 high quality bases) assembled on 2006-04-20
> BO12252.3prime
ATGGTCTAGAAAGCTTGCCTTTGATTTGCGCTGCATTCGCGAGCGTAGCA
TCTTGTTTTCATCCGCACATTTGGTGGTGATGGCAGTGCGCACTTCCCGC
GGAGTCATGTCCAGGCTGTTAGTCATCAGATAGACCAGATCGGCCACCTT
GAGCGGATCCAGCTGCTGTTTGCTGGGACGGGCACAGTCCCTAAATGCCG
GCGATGGTTTTCCGGATAGCGTATGATGGGCCAGTGTATCCCGGTCGAAG
ATCTCGCAGAGCAGCTTCCTCGTGATCGAGGGTCCGGTCATGTCCCAGTT
GATGGCACTTAGGCTAATGCGGGAAACTTCGGTGCCATTGGGACCGATCG
TCACCATCGGCGATTCGCCGTCCAGGTCGAATTCGAAACCAGGACACCGC
CGTTTCGCATTCGGAGTGGAGGTCACCGGTTTCTTGATACGCTTCCTCTT
GTTACCCATTGTCTCTTCTCCGCCGGGCACATAGTCCTCATCGTCATCGT
CCAAACCAAGATCTTCGTCGTTTGTTTTCGGCGTCGAGGTGTTGTGCTCA
TCGGCTCCATCGCGAAACGCGTTAAAAGGCTCCGAACTCTGCTCCTGATC
CTGGTCCTGCTCATGAGACTGTTTGTGCTCTGGCTCCTGATCCATTTCCT
GGACCTTTTCAATTTCGATGGTGAGGAGATCGAGAGCCTTGCGCTTACTG
CGCTCCCATTGCTGGAGAAGCTTCAAACGCGCCTCATTTACCGCCTGGAT
GGTGTTCCTCATCAGCTGCGAGTACTCCACATCCCTGCACCATGTCATCG
AAATCCTGATCCGGTGAACGCTGTGTCCTTAACAGCTTCTCAGCAGCCAG
TG
BO12252.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12205-PA | 1092 | Bsg25A-RA | 324..1089 | 784..19 | 3830 | 100 | Minus |
CG12205-PA | 1092 | Bsg25A-RA | 257..325 | 852..784 | 320 | 98.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:36:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bsg25A-RA | 1352 | CG12205-RA | 345..1177 | 852..19 | 4130 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:36:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4683227..4684059 | 19..852 | 4105 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:36:21 has no hits.
BO12252.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:35 Download gff for
BO12252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12205-PA | 257..1092 | 18..852 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:08 Download gff for
BO12252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12205-PA | 257..1092 | 18..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:06:32 Download gff for
BO12252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bsg25A-RA | 345..1188 | 10..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:16:13 Download gff for
BO12252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bsg25A-RA | 345..1188 | 10..852 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:16:13 Download gff for
BO12252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4683216..4684059 | 10..852 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:06:32 Download gff for
BO12252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4683216..4684059 | 10..852 | 99 | | Plus |
BO12252.5prime Sequence
819 bp (786 high quality bases) assembled on 2006-04-20
> BO12252.5prime
GAAGTTATCAGTCGACATGATTAACCGCCGTCAGCGTTTGGAATTCGCCC
TGACCCTATTGCCCTATGATCCCGAGACAGTTCAGTTGTCTGAAACGCAG
AAAAAAGTGGAGGCGATCATCGCCCGCCTGCGAACGGATGACTCCTTTAC
GGAGGAGGAGAGCGATGACTGCAAGGTGCGGCGCATTCAAGATGCAAATG
AGTTTGCCGATTCCGCCATGCGACACATCGAAATGTCCGATAGTGGCAAG
CTGAGCACTCTGGAAACTCTTACACTGGCTGCTGAGAAGCTGCTAAGGAC
ACAGCGTTCACCGGATCAGGATTTCGATGACATGGTGCAGGATGTGGAGT
ACTCGCAGCTGATGAGGAACACCATCCAGGCGGTAAATGAGGCGCGTTTG
AAGCTTCTCCAGCAATGGGAGCGCAGTAAGCGCAAGGCTCTCGATCTCCT
CACCATCGAAATTGAAAAGGTCCAGGAAATGGATCAGGAGCCAGAGCACA
AACAGTCTCATGAGCAGGACCAGGATCAGGAGCAGAGTTCGGAGCCTTTT
AACGCGTTTCGCGATGGAGCCGATGAGCACAACACCTCGACGCCGAAAAC
AAACGACGAAGATCTTGGTTTGGACGATGACGATGAGGACTATGTGCCCG
GCGGAGAAGAGACAATGGGTAACAAGAGGAAGCGTATCAAGAAACCGGTG
ACCTCCACTCCGAATGCGAAACGGCGGTGTCCTGGTTTCGAATTCGACCT
GGACGGCGAATCGCCGATGGTGACGATCGGTCCCAATGGCACCGAAGTTT
CCCGCATTAGCCTAAGTGC
BO12252.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12205-PA | 1092 | Bsg25A-RA | 1..803 | 17..819 | 4015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:38:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bsg25A-RA | 1352 | CG12205-RA | 89..891 | 17..819 | 4015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:38:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4683513..4684313 | 819..19 | 4005 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 00:38:10 has no hits.
BO12252.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:36 Download gff for
BO12252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12205-PA | 1..803 | 17..819 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:09 Download gff for
BO12252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12205-PA | 1..803 | 17..819 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:34:48 Download gff for
BO12252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bsg25A-RA | 82..891 | 9..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:05:22 Download gff for
BO12252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bsg25A-RA | 82..891 | 9..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:05:22 Download gff for
BO12252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4683513..4684313 | 19..819 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:34:48 Download gff for
BO12252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4683513..4684313 | 19..819 | 100 | | Minus |
BO12252.complete Sequence
1123 bp assembled on 2006-10-11
GenBank Submission: FJ632380
> BO12252.complete
GAAGTTATCAGTCGACATGATTAACCGCCGTCAGCGTTTGGAATTCGCCC
TGACCCTATTGCCCTATGATCCCGAGACAGTTCAGTTGTCTGAAACGCAG
AAAAAAGTGGAGGCGATCATCGCCCGCCTGCGAACGGATGACTCCTTTAC
GGAGGAGGAGAGCGATGACTGCAAGGTGCGGCGCATTCAAGATGCAAATG
AGTTTGCCGATTCCGCCATGCGACACATCGAAATGTCCGATAGTGGCAAG
CTGAGCACTCTGGAAACTCTTACACTGGCTGCTGAGAAGCTGCTAAGGAC
ACAGCGTTCACCGGATCAGGATTTCGATGACATGGTGCAGGATGTGGAGT
ACTCGCAGCTGATGAGGAACACCATCCAGGCGGTAAATGAGGCGCGTTTG
AAGCTTCTCCAGCAATGGGAGCGCAGTAAGCGCAAGGCTCTCGATCTCCT
CACCATCGAAATTGAAAAGGTCCAGGAAATGGATCAGGAGCCAGAGCACA
AACAGTCTCATGAGCAGGACCAGGATCAGGAGCAGAGTTCGGAGCCTTTT
AACGCGTTTCGCGATGGAGCCGATGAGCACAACACCTCGACGCCGAAAAC
AAACGACGAAGATCTTGGTTTGGACGATGACGATGAGGACTATGTGCCCG
GCGGAGAAGAGACAATGGGTAACAAGAGGAAGCGTATCAAGAAACCGGTG
ACCTCCACTCCGAATGCGAAACGGCGGTGTCCTGGTTTCGAATTCGACCT
GGACGGCGAATCGCCGATGGTGACGATCGGTCCCAATGGCACCGAAGTTT
CCCGCATTAGCCTAAGTGCCATCAACTGGGACATGACCGGACCCTCGATC
ACGAGGAAGCTGCTCTGCGAGATCTTCGACCGGGATACACTGGCCCATCA
TACGCTATCCGGAAAACCATCGCCGGCATTTAGGGACTGTGCCCGTCCCA
GCAAACAGCAGCTGGATCCGCTCAAGGTGGCCGATCTGGTCTATCTGATG
ACTAACAGCCTGGACATGACTCCGCGGGAAGTGCGCACTGCCATCACCAC
CAAATGTGCGGATGAAAACAAGATGCTACGCTCGCGAATGCAGCGCAAAT
CAAAGGCAAGCTTTCTAGACCAT
BO12252.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:36:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bsg25A-RA | 1092 | CG12205-PA | 1..1089 | 17..1105 | 5445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:36:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bsg25A-RA | 1352 | CG12205-RA | 89..1177 | 17..1105 | 5445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:36:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4683227..4684313 | 1105..19 | 5435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:36:32 has no hits.
BO12252.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:53 Download gff for
BO12252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bsg25A-RA | 1..1092 | 17..1106 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:27 Download gff for
BO12252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bsg25A-RA | 80..1186 | 9..1114 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:02 Download gff for
BO12252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bsg25A-RA | 89..1177 | 17..1107 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:54 Download gff for
BO12252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bsg25A-RA | 80..1186 | 9..1114 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:03 Download gff for
BO12252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bsg25A-RA | 89..1177 | 17..1107 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:03 Download gff for
BO12252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4683225..4684314 | 17..1107 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:02 Download gff for
BO12252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4683225..4684314 | 17..1107 | 99 | | Minus |
BO12252.pep Sequence
Translation from 16 to 1123
> BO12252.pep
MINRRQRLEFALTLLPYDPETVQLSETQKKVEAIIARLRTDDSFTEEESD
DCKVRRIQDANEFADSAMRHIEMSDSGKLSTLETLTLAAEKLLRTQRSPD
QDFDDMVQDVEYSQLMRNTIQAVNEARLKLLQQWERSKRKALDLLTIEIE
KVQEMDQEPEHKQSHEQDQDQEQSSEPFNAFRDGADEHNTSTPKTNDEDL
GLDDDDEDYVPGGEETMGNKRKRIKKPVTSTPNAKRRCPGFEFDLDGESP
MVTIGPNGTEVSRISLSAINWDMTGPSITRKLLCEIFDRDTLAHHTLSGK
PSPAFRDCARPSKQQLDPLKVADLVYLMTNSLDMTPREVRTAITTKCADE
NKMLRSRMQRKSKASFLDH
BO12252.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bsg25A-PA | 363 | CG12205-PA | 1..363 | 1..363 | 1871 | 100 | Plus |
insv-PB | 376 | CG3227-PB | 168..365 | 158..362 | 290 | 38.3 | Plus |
insv-PA | 376 | CG3227-PA | 168..365 | 158..362 | 290 | 38.3 | Plus |
Elba2-PA | 381 | CG9883-PA | 261..376 | 249..365 | 231 | 42.7 | Plus |