Clone BO12252 Report

Search the DGRC for BO12252

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:122
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptBsg25A-RA
Protein status:BO12252.pep: validated full length
Sequenced Size:1123

Clone Sequence Records

BO12252.3prime Sequence

852 bp (798 high quality bases) assembled on 2006-04-20

> BO12252.3prime
ATGGTCTAGAAAGCTTGCCTTTGATTTGCGCTGCATTCGCGAGCGTAGCA
TCTTGTTTTCATCCGCACATTTGGTGGTGATGGCAGTGCGCACTTCCCGC
GGAGTCATGTCCAGGCTGTTAGTCATCAGATAGACCAGATCGGCCACCTT
GAGCGGATCCAGCTGCTGTTTGCTGGGACGGGCACAGTCCCTAAATGCCG
GCGATGGTTTTCCGGATAGCGTATGATGGGCCAGTGTATCCCGGTCGAAG
ATCTCGCAGAGCAGCTTCCTCGTGATCGAGGGTCCGGTCATGTCCCAGTT
GATGGCACTTAGGCTAATGCGGGAAACTTCGGTGCCATTGGGACCGATCG
TCACCATCGGCGATTCGCCGTCCAGGTCGAATTCGAAACCAGGACACCGC
CGTTTCGCATTCGGAGTGGAGGTCACCGGTTTCTTGATACGCTTCCTCTT
GTTACCCATTGTCTCTTCTCCGCCGGGCACATAGTCCTCATCGTCATCGT
CCAAACCAAGATCTTCGTCGTTTGTTTTCGGCGTCGAGGTGTTGTGCTCA
TCGGCTCCATCGCGAAACGCGTTAAAAGGCTCCGAACTCTGCTCCTGATC
CTGGTCCTGCTCATGAGACTGTTTGTGCTCTGGCTCCTGATCCATTTCCT
GGACCTTTTCAATTTCGATGGTGAGGAGATCGAGAGCCTTGCGCTTACTG
CGCTCCCATTGCTGGAGAAGCTTCAAACGCGCCTCATTTACCGCCTGGAT
GGTGTTCCTCATCAGCTGCGAGTACTCCACATCCCTGCACCATGTCATCG
AAATCCTGATCCGGTGAACGCTGTGTCCTTAACAGCTTCTCAGCAGCCAG
TG

BO12252.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG12205-PA 1092 Bsg25A-RA 324..1089 784..19 3830 100 Minus
CG12205-PA 1092 Bsg25A-RA 257..325 852..784 320 98.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
Bsg25A-RA 1352 CG12205-RA 345..1177 852..19 4130 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4683227..4684059 19..852 4105 99.8 Plus
Blast to na_te.dros performed on 2015-02-11 10:36:21 has no hits.

BO12252.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:35 Download gff for BO12252.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12205-PA 257..1092 18..852 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:08 Download gff for BO12252.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12205-PA 257..1092 18..852 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:06:32 Download gff for BO12252.3prime
Subject Subject Range Query Range Percent Splice Strand
Bsg25A-RA 345..1188 10..852 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:16:13 Download gff for BO12252.3prime
Subject Subject Range Query Range Percent Splice Strand
Bsg25A-RA 345..1188 10..852 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:16:13 Download gff for BO12252.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 4683216..4684059 10..852 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:06:32 Download gff for BO12252.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4683216..4684059 10..852 99   Plus

BO12252.5prime Sequence

819 bp (786 high quality bases) assembled on 2006-04-20

> BO12252.5prime
GAAGTTATCAGTCGACATGATTAACCGCCGTCAGCGTTTGGAATTCGCCC
TGACCCTATTGCCCTATGATCCCGAGACAGTTCAGTTGTCTGAAACGCAG
AAAAAAGTGGAGGCGATCATCGCCCGCCTGCGAACGGATGACTCCTTTAC
GGAGGAGGAGAGCGATGACTGCAAGGTGCGGCGCATTCAAGATGCAAATG
AGTTTGCCGATTCCGCCATGCGACACATCGAAATGTCCGATAGTGGCAAG
CTGAGCACTCTGGAAACTCTTACACTGGCTGCTGAGAAGCTGCTAAGGAC
ACAGCGTTCACCGGATCAGGATTTCGATGACATGGTGCAGGATGTGGAGT
ACTCGCAGCTGATGAGGAACACCATCCAGGCGGTAAATGAGGCGCGTTTG
AAGCTTCTCCAGCAATGGGAGCGCAGTAAGCGCAAGGCTCTCGATCTCCT
CACCATCGAAATTGAAAAGGTCCAGGAAATGGATCAGGAGCCAGAGCACA
AACAGTCTCATGAGCAGGACCAGGATCAGGAGCAGAGTTCGGAGCCTTTT
AACGCGTTTCGCGATGGAGCCGATGAGCACAACACCTCGACGCCGAAAAC
AAACGACGAAGATCTTGGTTTGGACGATGACGATGAGGACTATGTGCCCG
GCGGAGAAGAGACAATGGGTAACAAGAGGAAGCGTATCAAGAAACCGGTG
ACCTCCACTCCGAATGCGAAACGGCGGTGTCCTGGTTTCGAATTCGACCT
GGACGGCGAATCGCCGATGGTGACGATCGGTCCCAATGGCACCGAAGTTT
CCCGCATTAGCCTAAGTGC

BO12252.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG12205-PA 1092 Bsg25A-RA 1..803 17..819 4015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:38:14
Subject Length Description Subject Range Query Range Score Percent Strand
Bsg25A-RA 1352 CG12205-RA 89..891 17..819 4015 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4683513..4684313 819..19 4005 100 Minus
Blast to na_te.dros performed on 2015-02-10 00:38:10 has no hits.

BO12252.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:36 Download gff for BO12252.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12205-PA 1..803 17..819 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:09 Download gff for BO12252.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12205-PA 1..803 17..819 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:34:48 Download gff for BO12252.5prime
Subject Subject Range Query Range Percent Splice Strand
Bsg25A-RA 82..891 9..819 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:05:22 Download gff for BO12252.5prime
Subject Subject Range Query Range Percent Splice Strand
Bsg25A-RA 82..891 9..819 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:05:22 Download gff for BO12252.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4683513..4684313 19..819 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:34:48 Download gff for BO12252.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4683513..4684313 19..819 100   Minus

BO12252.complete Sequence

1123 bp assembled on 2006-10-11

GenBank Submission: FJ632380

> BO12252.complete
GAAGTTATCAGTCGACATGATTAACCGCCGTCAGCGTTTGGAATTCGCCC
TGACCCTATTGCCCTATGATCCCGAGACAGTTCAGTTGTCTGAAACGCAG
AAAAAAGTGGAGGCGATCATCGCCCGCCTGCGAACGGATGACTCCTTTAC
GGAGGAGGAGAGCGATGACTGCAAGGTGCGGCGCATTCAAGATGCAAATG
AGTTTGCCGATTCCGCCATGCGACACATCGAAATGTCCGATAGTGGCAAG
CTGAGCACTCTGGAAACTCTTACACTGGCTGCTGAGAAGCTGCTAAGGAC
ACAGCGTTCACCGGATCAGGATTTCGATGACATGGTGCAGGATGTGGAGT
ACTCGCAGCTGATGAGGAACACCATCCAGGCGGTAAATGAGGCGCGTTTG
AAGCTTCTCCAGCAATGGGAGCGCAGTAAGCGCAAGGCTCTCGATCTCCT
CACCATCGAAATTGAAAAGGTCCAGGAAATGGATCAGGAGCCAGAGCACA
AACAGTCTCATGAGCAGGACCAGGATCAGGAGCAGAGTTCGGAGCCTTTT
AACGCGTTTCGCGATGGAGCCGATGAGCACAACACCTCGACGCCGAAAAC
AAACGACGAAGATCTTGGTTTGGACGATGACGATGAGGACTATGTGCCCG
GCGGAGAAGAGACAATGGGTAACAAGAGGAAGCGTATCAAGAAACCGGTG
ACCTCCACTCCGAATGCGAAACGGCGGTGTCCTGGTTTCGAATTCGACCT
GGACGGCGAATCGCCGATGGTGACGATCGGTCCCAATGGCACCGAAGTTT
CCCGCATTAGCCTAAGTGCCATCAACTGGGACATGACCGGACCCTCGATC
ACGAGGAAGCTGCTCTGCGAGATCTTCGACCGGGATACACTGGCCCATCA
TACGCTATCCGGAAAACCATCGCCGGCATTTAGGGACTGTGCCCGTCCCA
GCAAACAGCAGCTGGATCCGCTCAAGGTGGCCGATCTGGTCTATCTGATG
ACTAACAGCCTGGACATGACTCCGCGGGAAGTGCGCACTGCCATCACCAC
CAAATGTGCGGATGAAAACAAGATGCTACGCTCGCGAATGCAGCGCAAAT
CAAAGGCAAGCTTTCTAGACCAT

BO12252.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
Bsg25A-RA 1092 CG12205-PA 1..1089 17..1105 5445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:36:34
Subject Length Description Subject Range Query Range Score Percent Strand
Bsg25A-RA 1352 CG12205-RA 89..1177 17..1105 5445 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4683227..4684313 1105..19 5435 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:36:32 has no hits.

BO12252.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:53 Download gff for BO12252.complete
Subject Subject Range Query Range Percent Splice Strand
Bsg25A-RA 1..1092 17..1106 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:27 Download gff for BO12252.complete
Subject Subject Range Query Range Percent Splice Strand
Bsg25A-RA 80..1186 9..1114 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:02 Download gff for BO12252.complete
Subject Subject Range Query Range Percent Splice Strand
Bsg25A-RA 89..1177 17..1107 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:54 Download gff for BO12252.complete
Subject Subject Range Query Range Percent Splice Strand
Bsg25A-RA 80..1186 9..1114 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:03 Download gff for BO12252.complete
Subject Subject Range Query Range Percent Splice Strand
Bsg25A-RA 89..1177 17..1107 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:03 Download gff for BO12252.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4683225..4684314 17..1107 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:02 Download gff for BO12252.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4683225..4684314 17..1107 99   Minus

BO12252.pep Sequence

Translation from 16 to 1123

> BO12252.pep
MINRRQRLEFALTLLPYDPETVQLSETQKKVEAIIARLRTDDSFTEEESD
DCKVRRIQDANEFADSAMRHIEMSDSGKLSTLETLTLAAEKLLRTQRSPD
QDFDDMVQDVEYSQLMRNTIQAVNEARLKLLQQWERSKRKALDLLTIEIE
KVQEMDQEPEHKQSHEQDQDQEQSSEPFNAFRDGADEHNTSTPKTNDEDL
GLDDDDEDYVPGGEETMGNKRKRIKKPVTSTPNAKRRCPGFEFDLDGESP
MVTIGPNGTEVSRISLSAINWDMTGPSITRKLLCEIFDRDTLAHHTLSGK
PSPAFRDCARPSKQQLDPLKVADLVYLMTNSLDMTPREVRTAITTKCADE
NKMLRSRMQRKSKASFLDH

BO12252.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
Bsg25A-PA 363 CG12205-PA 1..363 1..363 1871 100 Plus
insv-PB 376 CG3227-PB 168..365 158..362 290 38.3 Plus
insv-PA 376 CG3227-PA 168..365 158..362 290 38.3 Plus
Elba2-PA 381 CG9883-PA 261..376 249..365 231 42.7 Plus