Clone Sequence Records
BO12253.3prime Sequence
831 bp (776 high quality bases) assembled on 2006-04-20
> BO12253.3prime
ATGGTCTAGAAAGCTTGCGAAATGTCGATTTTCGGTTTTCAGGCAAGTGA
AGAGGAAAATGAGTACAAGGAGATGACCCAACATCGCAAGGGAATAGATT
TCGGTTCTTGAACCAATATTGTGCTGAACAGCTGCGGGTAGTTCGCCTGT
GAGCACTTGAACTTGGACAATTACGGTGAACAGTCTGCCAAGGGAACAGG
AATAGTTGCCACTATCGGATAGTTTGGCATCTCCAATGGAGATACGACTG
GTTAGCCAAACATCGGAAACGCTTAAGCGCCTATTGGTCATTCCTTGCAG
TGGTTCTTCGTCCTTTGCCCAGGTTATAAACTTGGTGAAGTATTTCTCCA
GATCCTGGCCAGAGAACTTGTGTTGCGTCTGATTTACGTTGCCAATTAGA
TTAAGCTCACTAGTCGTCTCATTGATTAGTTTCTGTACAGCATCGTTTGC
AGAATCGGTTGATTTTAGAATGGTCTGACGTTCTTTTTGGAAAAAGCTAC
GCGATATTTGGCATTGTAGATCGACGGTGCTTCCAGACTTATAATAACGA
TCCCCCACGTCCCTCTCGTGCTCATCGATTATCCTCAGGGGGGGTTCCAA
GACAGTGAGATTTGTGGTGAATACCCGGGGGGGATGGGTGGAAACCTGGC
ACATGTAAACTCCGGCATCTTCAGTCTGCGTGGGATTGATAAGTAATCGC
CAATTGTTCGGGTACTGGAACTTCACCCGAATTCTCGGGTCTCCACTGTA
GGTCACGTTGCCAACGGTCAGGAGCGATACCTTCTCTGCCGTTCGCCTGA
CCCACATGACAGTTTTATCCTTGAGCATACC
BO12253.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14948-PA | 1560 | dpr18-RA | 745..1557 | 831..19 | 4065 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:17:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr18-RA | 2630 | CG14948-RA | 1205..2017 | 831..19 | 4065 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:17:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16068990..16069315 | 597..272 | 1630 | 100 | Minus |
| X | 23542271 | X | 16068715..16068928 | 810..597 | 1070 | 100 | Minus |
| X | 23542271 | X | 16069560..16069691 | 150..19 | 660 | 100 | Minus |
| X | 23542271 | X | 16069371..16069498 | 273..146 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:17:18 has no hits.
BO12253.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:36 Download gff for
BO12253.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr18-PA | 745..1560 | 16..831 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:10 Download gff for
BO12253.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14948-PA | 745..1560 | 16..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:25:01 Download gff for
BO12253.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr18-RA | 1202..2023 | 10..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:25:07 Download gff for
BO12253.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr18-RA | 1205..2026 | 10..831 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:25:07 Download gff for
BO12253.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16069564..16069700 | 10..146 | 97 | | Minus |
| X | 16067779..16067799 | 811..831 | 100 | -> | Minus |
| X | 16068715..16068928 | 597..810 | 100 | -> | Minus |
| X | 16068991..16069315 | 272..596 | 100 | -> | Minus |
| X | 16069373..16069497 | 147..271 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:25:01 Download gff for
BO12253.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15963406..15963530 | 147..271 | 100 | -> | Minus |
| arm_X | 15963597..15963733 | 10..146 | 97 | | Minus |
| arm_X | 15961812..15961832 | 811..831 | 100 | -> | Minus |
| arm_X | 15962748..15962961 | 597..810 | 100 | -> | Minus |
| arm_X | 15963024..15963348 | 272..596 | 100 | -> | Minus |
BO12253.5prime Sequence
766 bp (765 high quality bases) assembled on 2006-04-20
> BO12253.5prime
GAAGTTATCAGTCGACATGAGGCTTCCGAAAGGATATAGGACACTATCAC
CAGCATCGAACGCTGCCCAGACGCTACCACTCTCCTACAATTCACAAACC
AGTCTGAGCCTTCTTCGGCTGCTCACAATTGCTCTGGTGATTGGATCGCA
AGTTCAAGTTCTATACACGACATCCGTCGAAACAAAATCCCCCTCCGCAA
GTGAACAATCCAGAAACGGCGAGAATCGTTCATTACTTTTTGATGACTAT
AATAAAACTAAATCGACATTATCAACTGCTGATTACCTGTCAGCCACAAG
GGCAACCCTTTACGCGTTTTCATCGCAGGATCAGGACGAGGACCATTCCC
AAATGCCAATCGAGGCGTCTAACGCTCCGCACAGCCCCATTCCCACGAAA
ATGAGTCGGGGTAAAATACCCATGGAGACACCGGGCAGCATGGAGTTTAG
CAGCAATAGCCTTCCAATCAAAAATGTAGGGACAACTGATCAGCTGACGA
CTGTGACCATGCCCACCACAGCATTCGCATCCCTAAAAGTCGACAGAAGT
ACCATGAAACAGCCAATTGATTCCACACGCACGAGGAATCATTGGACAGC
AAGTGGATTCGCACGTGTCACAGAACGACCACGTAGCAAGCACCACCACG
AGCACCACTGGGGACCCTTTTTTGAGGAGCCCATCAACTCGGCAACCTCG
GGTGACAACCTCGTTTCCGCCGTACATTTGTTTACGGAAGCGGTGCTCAA
TTGCCGTGTCGGTATG
BO12253.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14948-PA | 1560 | dpr18-RA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:46:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr18-RA | 2630 | CG14948-RA | 461..1210 | 17..766 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:46:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16066367..16066808 | 165..606 | 2210 | 100 | Plus |
| X | 23542271 | X | 16067623..16067784 | 605..766 | 810 | 100 | Plus |
| X | 23542271 | X | 16065552..16065699 | 17..164 | 740 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 08:46:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\spock | 4952 | Dmir\spock SPOCK 4952bp Derived from AY144571. | 2824..2880 | 433..488 | 111 | 68.4 | Plus |
BO12253.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:37 Download gff for
BO12253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr18-PA | 1..750 | 17..766 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:12 Download gff for
BO12253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14948-PA | 1..750 | 17..766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:42:04 Download gff for
BO12253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr18-RA | 455..1207 | 10..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:48:20 Download gff for
BO12253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr18-RA | 458..1210 | 10..766 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:48:20 Download gff for
BO12253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16065549..16065699 | 10..164 | 97 | -> | Plus |
| X | 16066367..16066807 | 165..605 | 100 | -> | Plus |
| X | 16067624..16067784 | 606..766 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:42:04 Download gff for
BO12253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15959582..15959732 | 10..164 | 97 | -> | Plus |
| arm_X | 15961657..15961817 | 606..766 | 100 | | Plus |
| arm_X | 15960400..15960840 | 165..605 | 100 | -> | Plus |
BO12253.complete Sequence
1591 bp assembled on 2007-10-31
GenBank Submission: FJ632381
> BO12253.complete
GAAGTTATCAGTCGACATGAGGCTTCCGAAAGGATATAGGACACTATCAC
CAGCATCGAACGCTGCCCAGACGCTACCACTCTCCTACAATTCACAAACC
AGTCTGAGCCTTCTTCGGCTGCTCACAATTGCTCTGGTGATTGGATCGCA
AGTTCAAGTTCTATACACGACATCCGTCGAAACAAAATCCCCCTCCGCAA
GTGAACAATCCAGAAACGGCGAGAATCGTTCATTACTTTTTGATGACTAT
AATAAAACTAAATCGACATTATCAACTGCTGATTACCTGTCAGCCACAAG
GGCAACCCTTTACGCGTTTTCATCGCAGGATCAGGACGAGGACCATTCCC
AAATGCCAATCGAGGCGTCTAACGCTCCGCACAGCCCCATTCCCACGAAA
ATGAGTCGGGGTAAAATACCCATGGAGACACCGGGCAGCATGGAGTTTAG
CAGCAATAGCCTTCCAATCAAAAATGTAGGGACAACTGATCAGCTGACGA
CTGTGACCATGCCCACCACAGCATTCGCATCCCTAAAAGTCGACAGAAGT
ACCATGAAACAGCCAATTGATTCCACACGCACGAGGAATCATTGGACAGC
AAGTGGATTCGCACGTGTCACAGAACGACCACGTAGCAAGCACCACCACG
AGCACCACTGGGGACCCTTTTTTGAGGAGCCCATCAACTCGGCAACCTCG
GGTGACAACCTCGTTTCCGCCGTACATTTGTTTACGGAAGCGGTGCTCAA
TTGCCGTGTCGGTATGCTCAAGGATAAAACTGTCATGTGGGTCAGGCGAA
CGGCAGAGAAGGTATCGCTCCTGACCGTTGGCAACGTGACCTACAGTGGA
GACCCGAGAATTCGGGTGAAGTTCCAGTACCCGAACAATTGGCGATTACT
TATCAATCCCACGCAGACTGAAGATGCCGGAGTTTACATGTGCCAGGTTT
CCACCCATCCCCCCCGGGTATTCACCACAAATCTCACTGTCTTGGAACCC
CCCCTGAGGATAATCGATGAGCACGAGAGGGACGTGGGGGATCGTTATTA
TAAGTCTGGAAGCACCGTCGATCTACAATGCCAAATATCGCGTAGCTTTT
TCCAAAAAGAACGTCAGACCATTCTAAAATCAACCGATTCTGCAAACGAT
GCTGTACAGAAACTAATCAATGAGACGACTAGTGAGCTTAATCTAATTGG
CAACGTAAATCAGACGCAACACAAGTTCTCTGGCCAGGATCTGGAGAAAT
ACTTCACCAAGTTTATAACCTGGGCAAAGGACGAAGAACCACTGCAAGGA
ATGACCAATAGGCGCTTAAGCGTTTCCGATGTTTGGCTAACCAGTCGTAT
CTCCATTGGAGATGCCAAACTATCCGATAGTGGCAACTATTCCTGTTCCC
TTGGCAGACTGTTCACCGTAATTGTCCAAGTTCAAGTGCTCACAGGCGAA
CTACCCGCAGCTGTTCAGCACAATATTGGTTCAAGAACCGAAATCTATTC
CCTTGCGATGTTGGGTCATCTCCTTGTACTCATTTTCCTCTTCACTTGCC
TGAAAACCGAAAATCGACATTTCGCAAGCTTTCTAGACCAT
BO12253.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:01:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr18-RA | 1560 | CG14948-PA | 1..1557 | 17..1573 | 7785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr18-RA | 2630 | CG14948-RA | 461..2017 | 17..1573 | 7785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16066367..16066808 | 165..606 | 2210 | 100 | Plus |
| X | 23542271 | X | 16068990..16069315 | 995..1320 | 1630 | 100 | Plus |
| X | 23542271 | X | 16068715..16068928 | 782..995 | 1070 | 100 | Plus |
| X | 23542271 | X | 16067623..16067801 | 605..783 | 895 | 100 | Plus |
| X | 23542271 | X | 16065552..16065699 | 17..164 | 740 | 100 | Plus |
| X | 23542271 | X | 16069560..16069691 | 1442..1573 | 660 | 100 | Plus |
| X | 23542271 | X | 16069371..16069498 | 1319..1446 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:01:28 has no hits.
BO12253.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:11 Download gff for
BO12253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr18-RA | 1..1560 | 17..1576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:12:18 Download gff for
BO12253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr18-RA | 455..2023 | 10..1582 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:07:22 Download gff for
BO12253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr18-RA | 458..2014 | 17..1575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:57 Download gff for
BO12253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr18-RA | 458..2014 | 17..1575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:09:29 Download gff for
BO12253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr18-RA | 461..2017 | 17..1575 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:09:29 Download gff for
BO12253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16065552..16065699 | 17..164 | 100 | -> | Plus |
| X | 16066367..16066807 | 165..605 | 100 | -> | Plus |
| X | 16067624..16067799 | 606..781 | 100 | -> | Plus |
| X | 16068715..16068928 | 782..995 | 100 | -> | Plus |
| X | 16068991..16069315 | 996..1320 | 100 | -> | Plus |
| X | 16069373..16069497 | 1321..1445 | 100 | -> | Plus |
| X | 16069564..16069691 | 1446..1575 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:07:22 Download gff for
BO12253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15959585..15959732 | 17..164 | 100 | -> | Plus |
| arm_X | 15960400..15960840 | 165..605 | 100 | -> | Plus |
| arm_X | 15961657..15961832 | 606..781 | 100 | -> | Plus |
| arm_X | 15962748..15962961 | 782..995 | 100 | -> | Plus |
| arm_X | 15963024..15963348 | 996..1320 | 100 | -> | Plus |
| arm_X | 15963406..15963530 | 1321..1445 | 100 | -> | Plus |
| arm_X | 15963597..15963724 | 1446..1575 | 98 | | Plus |
BO12253.pep Sequence
Translation from 16 to 1591
> BO12253.pep
MRLPKGYRTLSPASNAAQTLPLSYNSQTSLSLLRLLTIALVIGSQVQVLY
TTSVETKSPSASEQSRNGENRSLLFDDYNKTKSTLSTADYLSATRATLYA
FSSQDQDEDHSQMPIEASNAPHSPIPTKMSRGKIPMETPGSMEFSSNSLP
IKNVGTTDQLTTVTMPTTAFASLKVDRSTMKQPIDSTRTRNHWTASGFAR
VTERPRSKHHHEHHWGPFFEEPINSATSGDNLVSAVHLFTEAVLNCRVGM
LKDKTVMWVRRTAEKVSLLTVGNVTYSGDPRIRVKFQYPNNWRLLINPTQ
TEDAGVYMCQVSTHPPRVFTTNLTVLEPPLRIIDEHERDVGDRYYKSGST
VDLQCQISRSFFQKERQTILKSTDSANDAVQKLINETTSELNLIGNVNQT
QHKFSGQDLEKYFTKFITWAKDEEPLQGMTNRRLSVSDVWLTSRISIGDA
KLSDSGNYSCSLGRLFTVIVQVQVLTGELPAAVQHNIGSRTEIYSLAMLG
HLLVLIFLFTCLKTENRHFASFLDH
BO12253.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr18-PA | 519 | CG14948-PA | 1..519 | 1..519 | 2677 | 100 | Plus |
| dpr14-PB | 340 | CG10946-PB | 69..313 | 213..512 | 392 | 33.7 | Plus |
| dpr14-PA | 340 | CG10946-PA | 69..313 | 213..512 | 392 | 33.7 | Plus |
| dpr20-PA | 525 | CG12191-PA | 257..517 | 209..508 | 362 | 30 | Plus |
| dpr10-PC | 408 | CG32057-PC | 23..309 | 186..486 | 253 | 29.1 | Plus |
