Clone Sequence Records
BO12254.3prime Sequence
838 bp (782 high quality bases) assembled on 2006-04-20
> BO12254.3prime
ATGGTCTAGAAAGCTTGCCGCCGGTACTTCCGTTGCGGTGGCGGCGGTAG
TCAGGACCTCATCCTCCGCATCATTCTCCGTCGTTGTCGTGGGCATGGTC
ATGGTTGTGGTGGGATGTGTGACCGGAGCAAAGGTGGTTGCCCTGGCCAA
CATTTCCATGCCCAGTCCGTGGGGCAGGTGCACATTGGGCGGCAGACCCT
CCATCATTTGCTGCTGCATCTGTTGGCGGAGCTGCTGGCGCTGCAGCTGC
ATGGCCAGGTAATTGGCCAAATTGGCCGTGAGCTTGGCCCGATGATTCTC
CACCCGGCGCACATTTCGCACGAGGCGATTGTACACCAGTGGCTTCACAT
CGATGGCCCATAGGAAGTCGAGGTGATTAAAACGCTCCATGGGCACCAAA
TACTTGTCGATCACATTCGGCAGCTCGCGGGCCAAACGGTCCACTCCCGT
GGTGGAGACAAGCAGATCATTCACCGAGTAATATAGTGCCACCGGCACTT
TCACCCTGGACAAGTCATAGTCCGGCGGAGTCATCCGGTTGTACTCCAGC
TGGTTGCGCAGATAGCCGCGGTCGAATTTCCGGAAATGGCCCGACTTCAT
CAGCTGGCCAAAGTGCTCCAGCTGCTTAATCGAGGCTCCCGATGGCGTGT
GGCTCAGCATCACAGGAAGCATGGTTTTGTTCAGCTGTTCGGAGTTGTAG
CCGGCGACCAAAAACAGGATATTCGAGCAGACGTCCTGCGTCATGGCGTT
GTCGTGGCACACAACCTGGCTGTGGTCCACTAGGAATTTTGTGTTGGGCA
TGAATTCTGTGATGCGCAGCATTCGTGTGGCGGCCGTG
BO12254.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31871-PA | 1596 | CG31871-RA | 774..1593 | 838..19 | 4100 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:25:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31871-RA | 2332 | CG31871-RA | 1202..2021 | 838..19 | 4100 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:25:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10670520..10671176 | 675..19 | 3285 | 100 | Minus |
2L | 23513712 | 2L | 10669170..10669329 | 835..676 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:25:47 has no hits.
BO12254.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:38 Download gff for
BO12254.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31871-PA | 774..1596 | 16..838 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:13 Download gff for
BO12254.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31871-PA | 774..1596 | 16..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:28:57 Download gff for
BO12254.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31871-RA | 1202..2028 | 10..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:48:17 Download gff for
BO12254.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31871-RA | 1202..2028 | 10..838 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:48:17 Download gff for
BO12254.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10669168..10669329 | 676..838 | 99 | -> | Minus |
2L | 10670520..10671183 | 10..675 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:28:57 Download gff for
BO12254.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10669168..10669329 | 676..838 | 99 | -> | Minus |
arm_2L | 10670520..10671183 | 10..675 | 99 | | Minus |
BO12254.5prime Sequence
849 bp (759 high quality bases) assembled on 2006-04-20
> BO12254.5prime
GAAGTTATCAGTCGACATGCGGTCCACCGTCGAGGTCAAGGGTCGCCTGC
TGTTGACCCTGCTGCTACACTGCCTCGTCGCTCTCGAGGTGTGCGGACGG
GCCGGTGCCTTCACCCTCCTCTCGCCCTTTAGCTACAGCTCCCTGAGCTT
CAAGAACCTGCTCAACTCTGTGCTGCTCTCGAGCAACCCCAACCTGGCCG
GCGGCGGAAGGAACCTCAAATCGGATGTCCTAGAAGATGCATCCCTCATT
ACGCCCAAATTAATACGCAAATATGGATATCCATCGGAAACCCACACGGT
GGTGACGAAGGATGGCTATATCCTGGAAATGCATCGCATTCCCAAGAAGG
GAGCCCAGCCGGTTCTCCTCATGCACGGAATTCTTGATACCTCTGCAACA
TGGGTGCTTATGGGACCCAAGTCAGGATTAGGCTACATGCTCTCCGATCT
GGGCTACGACGTGTGGATGGGCAACTCTCGGGGCAATCGGTACTCCAAGA
ACCACACCAGTTTGAATAGCGACTATCAGGAGTTCTGGGACTTCACCTTC
CACGAGATGGGCAAGTACGACCTTCCGGCCAATATCGACTACATCCTGAG
CAAGACGGGATACGAGCAGGTCCACTACATCGGTCACTCCCAGGGAACAG
CCATCTTCTGGGTCCTGTGCTCCGAGCAGCCCGCCTACACCCAGAAGATA
ACCTCCATGCACGCCCTGGCGCCCATCGCCTACATACACGACATGAAGAG
CCCCCTGTTCCGCACCCTGGTCCTCTTCCTCGACTTTCTCACGGCCGCCA
CACGAATGCTGCGCATCACAGAATTCATGCCCAACACAAAATTCCTAAT
BO12254.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31871-PA | 1596 | CG31871-RA | 1..831 | 17..847 | 4155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:11:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31871-RA | 2332 | CG31871-RA | 429..1259 | 17..847 | 4155 | 100 | Plus |
CG18301-RA | 1371 | CG18301-RA | 449..577 | 533..661 | 195 | 77.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:11:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10668691..10669055 | 430..794 | 1825 | 100 | Plus |
2L | 23513712 | 2L | 10662509..10662745 | 17..253 | 1185 | 100 | Plus |
2L | 23513712 | 2L | 10668158..10668337 | 253..432 | 900 | 100 | Plus |
2L | 23513712 | 2L | 10669170..10669224 | 793..847 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:11:12 has no hits.
BO12254.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:39 Download gff for
BO12254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31871-PA | 1..833 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:14 Download gff for
BO12254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31871-PA | 1..833 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:53:08 Download gff for
BO12254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31871-RA | 427..1261 | 13..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:16:58 Download gff for
BO12254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31871-RA | 427..1261 | 13..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:16:58 Download gff for
BO12254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10662507..10662745 | 13..253 | 99 | -> | Plus |
2L | 10668159..10668336 | 254..431 | 100 | -> | Plus |
2L | 10668693..10669054 | 432..793 | 100 | -> | Plus |
2L | 10669171..10669226 | 794..849 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:53:08 Download gff for
BO12254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10662507..10662745 | 13..253 | 99 | -> | Plus |
arm_2L | 10668159..10668336 | 254..431 | 100 | -> | Plus |
arm_2L | 10668693..10669054 | 432..793 | 100 | -> | Plus |
arm_2L | 10669171..10669226 | 794..849 | 98 | | Plus |
BO12254.complete Sequence
1627 bp assembled on 2007-06-22
GenBank Submission: FJ632382
> BO12254.complete
GAAGTTATCAGTCGACATGCGGTCCACCGTCGAGGTCAAGGGTCGCCTGC
TGTTGACCCTGCTGCTACACTGCCTCGTCGCTCTCGAGGTGTGCGGACGG
GCCGGTGCCTTCACCCTCCTCTCGCCCTTTAGCTACAGCTCCCTGAGCTT
CAAGAACCTGCTCAACTCTGTGCTGCTCTCGAGCAACCCCAACCTGGCCG
GCGGCGGAAGGAACCTCAAATCGGATGTCCTAGAAGATGCATCCCTCATT
ACGCCCAAATTAATACGCAAATATGGATATCCATCGGAAACCCACACGGT
GGTGACGAAGGATGGCTATATCCTGGAAATGCATCGCATTCCCAAGAAGG
GAGCCCAGCCGGTTCTCCTCATGCACGGAATTCTTGATACCTCTGCAACA
TGGGTGCTTATGGGACCCAAGTCAGGATTAGGCTACATGCTCTCCGATCT
GGGCTACGACGTGTGGATGGGCAACTCTCGGGGCAATCGGTACTCCAAGA
ACCACACCAGTTTGAATAGCGACTATCAGGAGTTCTGGGACTTCACCTTC
CACGAGATGGGCAAGTACGACCTTCCGGCCAATATCGACTACATCCTGAG
CAAGACGGGATACGAGCAGGTCCACTACATCGGTCACTCCCAGGGAACAG
CCATCTTCTGGGTCCTGTGCTCCGAGCAGCCCGCCTACACCCAGAAGATA
ACCTCCATGCACGCCCTGGCGCCCATCGCCTACATACACGACATGAAGAG
CCCCCTGTTCCGCACCCTGGTCCTCTTCCTCGACTTTCTCACGGCCGCCA
CACGAATGCTGCGCATCACAGAATTCATGCCCAACACAAAATTCCTAGTG
GACCACAGCCAGGTTGTGTGCCACGACAACGCCATGACGCAGGACGTCTG
CTCGAATATCCTGTTTTTGGTCGCCGGCTACAACTCCGAACAGCTGAACA
AAACCATGCTTCCTGTGATGCTGAGCCACACGCCATCGGGAGCCTCGATT
AAGCAGCTGGAGCACTTTGGCCAGCTGATGAAGTCGGGCCATTTCCGGAA
ATTCGACCGCGGCTATCTGCGCAACCAGCTGGAGTACAACCGGATGACTC
CGCCGGACTATGACTTGTCCAGGGTGAAAGTGCCGGTGGCACTATATTAC
TCGGTGAATGATCTGCTTGTCTCCACCACGGGAGTGGACCGTTTGGCCCG
CGAGCTGCCGAATGTGATCGACAAGTATTTGGTGCCCATGGAGCGTTTTA
ATCACCTCGACTTCCTATGGGCCATCGATGTGAAGCCACTGGTGTACAAT
CGCCTCGTGCGAAATGTGCGCCGGGTGGAGAATCATCGGGCCAAGCTCAC
GGCCAATTTGGCCAATTACCTGGCCATGCAGCTGCAGCGCCAGCAGCTCC
GCCAACAGATGCAGCAGCAAATGATGGAGGGTCTGCCGCCCAATGTGCAC
CTGCCCCACGGACTGGGCATGGAAATGTTGGCCAGGGCAACCACCTTTGC
TCCGGTCACACATCCCACCACAACCATGACCATGCCCACGACAACGACGG
AGAATGATGCGGAGGATGAGGTCCTGACTACCGCCGCCACCGCAACGGAA
GTACCGGCGGCAAGCTTTCTAGACCAT
BO12254.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:09:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31871-RA | 1596 | CG31871-PA | 1..1593 | 17..1609 | 7965 | 100 | Plus |
CG18301-RA | 1269 | CG18301-PA | 418..546 | 533..661 | 180 | 76 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31871-RA | 2332 | CG31871-RA | 429..2021 | 17..1609 | 7965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10670520..10671176 | 953..1609 | 3285 | 100 | Plus |
2L | 23513712 | 2L | 10668691..10669055 | 430..794 | 1825 | 100 | Plus |
2L | 23513712 | 2L | 10662509..10662745 | 17..253 | 1185 | 100 | Plus |
2L | 23513712 | 2L | 10668158..10668337 | 253..432 | 900 | 100 | Plus |
2L | 23513712 | 2L | 10669170..10669329 | 793..952 | 800 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:09:09 has no hits.
BO12254.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:25:02 Download gff for
BO12254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31871-RA | 421..2022 | 13..1618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:40:28 Download gff for
BO12254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31871-RA | 429..2021 | 17..1611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:24 Download gff for
BO12254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31871-RA | 421..2022 | 13..1618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:54 Download gff for
BO12254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31871-RA | 429..2021 | 17..1611 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:54 Download gff for
BO12254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10662509..10662745 | 17..253 | 100 | -> | Plus |
2L | 10668159..10668336 | 254..431 | 100 | -> | Plus |
2L | 10668693..10669054 | 432..793 | 100 | -> | Plus |
2L | 10669171..10669329 | 794..952 | 100 | -> | Plus |
2L | 10670520..10671176 | 953..1611 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:40:28 Download gff for
BO12254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10662509..10662745 | 17..253 | 100 | -> | Plus |
arm_2L | 10668159..10668336 | 254..431 | 100 | -> | Plus |
arm_2L | 10668693..10669054 | 432..793 | 100 | -> | Plus |
arm_2L | 10669171..10669329 | 794..952 | 100 | -> | Plus |
arm_2L | 10670520..10671176 | 953..1611 | 99 | | Plus |
BO12254.pep Sequence
Translation from 16 to 1627
> BO12254.pep
MRSTVEVKGRLLLTLLLHCLVALEVCGRAGAFTLLSPFSYSSLSFKNLLN
SVLLSSNPNLAGGGRNLKSDVLEDASLITPKLIRKYGYPSETHTVVTKDG
YILEMHRIPKKGAQPVLLMHGILDTSATWVLMGPKSGLGYMLSDLGYDVW
MGNSRGNRYSKNHTSLNSDYQEFWDFTFHEMGKYDLPANIDYILSKTGYE
QVHYIGHSQGTAIFWVLCSEQPAYTQKITSMHALAPIAYIHDMKSPLFRT
LVLFLDFLTAATRMLRITEFMPNTKFLVDHSQVVCHDNAMTQDVCSNILF
LVAGYNSEQLNKTMLPVMLSHTPSGASIKQLEHFGQLMKSGHFRKFDRGY
LRNQLEYNRMTPPDYDLSRVKVPVALYYSVNDLLVSTTGVDRLARELPNV
IDKYLVPMERFNHLDFLWAIDVKPLVYNRLVRNVRRVENHRAKLTANLAN
YLAMQLQRQQLRQQMQQQMMEGLPPNVHLPHGLGMEMLARATTFAPVTHP
TTTMTMPTTTTENDAEDEVLTTAATATEVPAASFLDH
BO12254.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:22:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31871-PA | 531 | CG31871-PA | 1..531 | 1..531 | 2774 | 100 | Plus |
Lip4-PA | 434 | CG6113-PA | 4..431 | 10..439 | 1097 | 46.4 | Plus |
Lip4-PB | 432 | CG6113-PB | 4..429 | 10..439 | 1095 | 46.7 | Plus |
Lip4-PC | 448 | CG6113-PC | 21..445 | 20..439 | 1094 | 47 | Plus |
CG18301-PA | 422 | CG18301-PA | 34..396 | 67..431 | 987 | 49.1 | Plus |