Clone BO12254 Report

Search the DGRC for BO12254

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:122
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG31871-RA
Protein status:BO12254.pep: validated full length
Sequenced Size:1627

Clone Sequence Records

BO12254.3prime Sequence

838 bp (782 high quality bases) assembled on 2006-04-20

> BO12254.3prime
ATGGTCTAGAAAGCTTGCCGCCGGTACTTCCGTTGCGGTGGCGGCGGTAG
TCAGGACCTCATCCTCCGCATCATTCTCCGTCGTTGTCGTGGGCATGGTC
ATGGTTGTGGTGGGATGTGTGACCGGAGCAAAGGTGGTTGCCCTGGCCAA
CATTTCCATGCCCAGTCCGTGGGGCAGGTGCACATTGGGCGGCAGACCCT
CCATCATTTGCTGCTGCATCTGTTGGCGGAGCTGCTGGCGCTGCAGCTGC
ATGGCCAGGTAATTGGCCAAATTGGCCGTGAGCTTGGCCCGATGATTCTC
CACCCGGCGCACATTTCGCACGAGGCGATTGTACACCAGTGGCTTCACAT
CGATGGCCCATAGGAAGTCGAGGTGATTAAAACGCTCCATGGGCACCAAA
TACTTGTCGATCACATTCGGCAGCTCGCGGGCCAAACGGTCCACTCCCGT
GGTGGAGACAAGCAGATCATTCACCGAGTAATATAGTGCCACCGGCACTT
TCACCCTGGACAAGTCATAGTCCGGCGGAGTCATCCGGTTGTACTCCAGC
TGGTTGCGCAGATAGCCGCGGTCGAATTTCCGGAAATGGCCCGACTTCAT
CAGCTGGCCAAAGTGCTCCAGCTGCTTAATCGAGGCTCCCGATGGCGTGT
GGCTCAGCATCACAGGAAGCATGGTTTTGTTCAGCTGTTCGGAGTTGTAG
CCGGCGACCAAAAACAGGATATTCGAGCAGACGTCCTGCGTCATGGCGTT
GTCGTGGCACACAACCTGGCTGTGGTCCACTAGGAATTTTGTGTTGGGCA
TGAATTCTGTGATGCGCAGCATTCGTGTGGCGGCCGTG

BO12254.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG31871-PA 1596 CG31871-RA 774..1593 838..19 4100 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG31871-RA 2332 CG31871-RA 1202..2021 838..19 4100 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10670520..10671176 675..19 3285 100 Minus
2L 23513712 2L 10669170..10669329 835..676 800 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:25:47 has no hits.

BO12254.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:38 Download gff for BO12254.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31871-PA 774..1596 16..838 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:13 Download gff for BO12254.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31871-PA 774..1596 16..838 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:28:57 Download gff for BO12254.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31871-RA 1202..2028 10..838 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:48:17 Download gff for BO12254.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31871-RA 1202..2028 10..838 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:48:17 Download gff for BO12254.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10669168..10669329 676..838 99 -> Minus
2L 10670520..10671183 10..675 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:28:57 Download gff for BO12254.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10669168..10669329 676..838 99 -> Minus
arm_2L 10670520..10671183 10..675 99   Minus

BO12254.5prime Sequence

849 bp (759 high quality bases) assembled on 2006-04-20

> BO12254.5prime
GAAGTTATCAGTCGACATGCGGTCCACCGTCGAGGTCAAGGGTCGCCTGC
TGTTGACCCTGCTGCTACACTGCCTCGTCGCTCTCGAGGTGTGCGGACGG
GCCGGTGCCTTCACCCTCCTCTCGCCCTTTAGCTACAGCTCCCTGAGCTT
CAAGAACCTGCTCAACTCTGTGCTGCTCTCGAGCAACCCCAACCTGGCCG
GCGGCGGAAGGAACCTCAAATCGGATGTCCTAGAAGATGCATCCCTCATT
ACGCCCAAATTAATACGCAAATATGGATATCCATCGGAAACCCACACGGT
GGTGACGAAGGATGGCTATATCCTGGAAATGCATCGCATTCCCAAGAAGG
GAGCCCAGCCGGTTCTCCTCATGCACGGAATTCTTGATACCTCTGCAACA
TGGGTGCTTATGGGACCCAAGTCAGGATTAGGCTACATGCTCTCCGATCT
GGGCTACGACGTGTGGATGGGCAACTCTCGGGGCAATCGGTACTCCAAGA
ACCACACCAGTTTGAATAGCGACTATCAGGAGTTCTGGGACTTCACCTTC
CACGAGATGGGCAAGTACGACCTTCCGGCCAATATCGACTACATCCTGAG
CAAGACGGGATACGAGCAGGTCCACTACATCGGTCACTCCCAGGGAACAG
CCATCTTCTGGGTCCTGTGCTCCGAGCAGCCCGCCTACACCCAGAAGATA
ACCTCCATGCACGCCCTGGCGCCCATCGCCTACATACACGACATGAAGAG
CCCCCTGTTCCGCACCCTGGTCCTCTTCCTCGACTTTCTCACGGCCGCCA
CACGAATGCTGCGCATCACAGAATTCATGCCCAACACAAAATTCCTAAT

BO12254.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG31871-PA 1596 CG31871-RA 1..831 17..847 4155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:11:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG31871-RA 2332 CG31871-RA 429..1259 17..847 4155 100 Plus
CG18301-RA 1371 CG18301-RA 449..577 533..661 195 77.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:11:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10668691..10669055 430..794 1825 100 Plus
2L 23513712 2L 10662509..10662745 17..253 1185 100 Plus
2L 23513712 2L 10668158..10668337 253..432 900 100 Plus
2L 23513712 2L 10669170..10669224 793..847 275 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:11:12 has no hits.

BO12254.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:39 Download gff for BO12254.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31871-PA 1..833 17..849 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:14 Download gff for BO12254.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31871-PA 1..833 17..849 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:53:08 Download gff for BO12254.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31871-RA 427..1261 13..849 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:16:58 Download gff for BO12254.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31871-RA 427..1261 13..849 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:16:58 Download gff for BO12254.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10662507..10662745 13..253 99 -> Plus
2L 10668159..10668336 254..431 100 -> Plus
2L 10668693..10669054 432..793 100 -> Plus
2L 10669171..10669226 794..849 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:53:08 Download gff for BO12254.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10662507..10662745 13..253 99 -> Plus
arm_2L 10668159..10668336 254..431 100 -> Plus
arm_2L 10668693..10669054 432..793 100 -> Plus
arm_2L 10669171..10669226 794..849 98   Plus

BO12254.complete Sequence

1627 bp assembled on 2007-06-22

GenBank Submission: FJ632382

> BO12254.complete
GAAGTTATCAGTCGACATGCGGTCCACCGTCGAGGTCAAGGGTCGCCTGC
TGTTGACCCTGCTGCTACACTGCCTCGTCGCTCTCGAGGTGTGCGGACGG
GCCGGTGCCTTCACCCTCCTCTCGCCCTTTAGCTACAGCTCCCTGAGCTT
CAAGAACCTGCTCAACTCTGTGCTGCTCTCGAGCAACCCCAACCTGGCCG
GCGGCGGAAGGAACCTCAAATCGGATGTCCTAGAAGATGCATCCCTCATT
ACGCCCAAATTAATACGCAAATATGGATATCCATCGGAAACCCACACGGT
GGTGACGAAGGATGGCTATATCCTGGAAATGCATCGCATTCCCAAGAAGG
GAGCCCAGCCGGTTCTCCTCATGCACGGAATTCTTGATACCTCTGCAACA
TGGGTGCTTATGGGACCCAAGTCAGGATTAGGCTACATGCTCTCCGATCT
GGGCTACGACGTGTGGATGGGCAACTCTCGGGGCAATCGGTACTCCAAGA
ACCACACCAGTTTGAATAGCGACTATCAGGAGTTCTGGGACTTCACCTTC
CACGAGATGGGCAAGTACGACCTTCCGGCCAATATCGACTACATCCTGAG
CAAGACGGGATACGAGCAGGTCCACTACATCGGTCACTCCCAGGGAACAG
CCATCTTCTGGGTCCTGTGCTCCGAGCAGCCCGCCTACACCCAGAAGATA
ACCTCCATGCACGCCCTGGCGCCCATCGCCTACATACACGACATGAAGAG
CCCCCTGTTCCGCACCCTGGTCCTCTTCCTCGACTTTCTCACGGCCGCCA
CACGAATGCTGCGCATCACAGAATTCATGCCCAACACAAAATTCCTAGTG
GACCACAGCCAGGTTGTGTGCCACGACAACGCCATGACGCAGGACGTCTG
CTCGAATATCCTGTTTTTGGTCGCCGGCTACAACTCCGAACAGCTGAACA
AAACCATGCTTCCTGTGATGCTGAGCCACACGCCATCGGGAGCCTCGATT
AAGCAGCTGGAGCACTTTGGCCAGCTGATGAAGTCGGGCCATTTCCGGAA
ATTCGACCGCGGCTATCTGCGCAACCAGCTGGAGTACAACCGGATGACTC
CGCCGGACTATGACTTGTCCAGGGTGAAAGTGCCGGTGGCACTATATTAC
TCGGTGAATGATCTGCTTGTCTCCACCACGGGAGTGGACCGTTTGGCCCG
CGAGCTGCCGAATGTGATCGACAAGTATTTGGTGCCCATGGAGCGTTTTA
ATCACCTCGACTTCCTATGGGCCATCGATGTGAAGCCACTGGTGTACAAT
CGCCTCGTGCGAAATGTGCGCCGGGTGGAGAATCATCGGGCCAAGCTCAC
GGCCAATTTGGCCAATTACCTGGCCATGCAGCTGCAGCGCCAGCAGCTCC
GCCAACAGATGCAGCAGCAAATGATGGAGGGTCTGCCGCCCAATGTGCAC
CTGCCCCACGGACTGGGCATGGAAATGTTGGCCAGGGCAACCACCTTTGC
TCCGGTCACACATCCCACCACAACCATGACCATGCCCACGACAACGACGG
AGAATGATGCGGAGGATGAGGTCCTGACTACCGCCGCCACCGCAACGGAA
GTACCGGCGGCAAGCTTTCTAGACCAT

BO12254.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:09:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG31871-RA 1596 CG31871-PA 1..1593 17..1609 7965 100 Plus
CG18301-RA 1269 CG18301-PA 418..546 533..661 180 76 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG31871-RA 2332 CG31871-RA 429..2021 17..1609 7965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10670520..10671176 953..1609 3285 100 Plus
2L 23513712 2L 10668691..10669055 430..794 1825 100 Plus
2L 23513712 2L 10662509..10662745 17..253 1185 100 Plus
2L 23513712 2L 10668158..10668337 253..432 900 100 Plus
2L 23513712 2L 10669170..10669329 793..952 800 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:09:09 has no hits.

BO12254.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:25:02 Download gff for BO12254.complete
Subject Subject Range Query Range Percent Splice Strand
CG31871-RA 421..2022 13..1618 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:40:28 Download gff for BO12254.complete
Subject Subject Range Query Range Percent Splice Strand
CG31871-RA 429..2021 17..1611 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:24 Download gff for BO12254.complete
Subject Subject Range Query Range Percent Splice Strand
CG31871-RA 421..2022 13..1618 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:54 Download gff for BO12254.complete
Subject Subject Range Query Range Percent Splice Strand
CG31871-RA 429..2021 17..1611 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:54 Download gff for BO12254.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10662509..10662745 17..253 100 -> Plus
2L 10668159..10668336 254..431 100 -> Plus
2L 10668693..10669054 432..793 100 -> Plus
2L 10669171..10669329 794..952 100 -> Plus
2L 10670520..10671176 953..1611 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:40:28 Download gff for BO12254.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10662509..10662745 17..253 100 -> Plus
arm_2L 10668159..10668336 254..431 100 -> Plus
arm_2L 10668693..10669054 432..793 100 -> Plus
arm_2L 10669171..10669329 794..952 100 -> Plus
arm_2L 10670520..10671176 953..1611 99   Plus

BO12254.pep Sequence

Translation from 16 to 1627

> BO12254.pep
MRSTVEVKGRLLLTLLLHCLVALEVCGRAGAFTLLSPFSYSSLSFKNLLN
SVLLSSNPNLAGGGRNLKSDVLEDASLITPKLIRKYGYPSETHTVVTKDG
YILEMHRIPKKGAQPVLLMHGILDTSATWVLMGPKSGLGYMLSDLGYDVW
MGNSRGNRYSKNHTSLNSDYQEFWDFTFHEMGKYDLPANIDYILSKTGYE
QVHYIGHSQGTAIFWVLCSEQPAYTQKITSMHALAPIAYIHDMKSPLFRT
LVLFLDFLTAATRMLRITEFMPNTKFLVDHSQVVCHDNAMTQDVCSNILF
LVAGYNSEQLNKTMLPVMLSHTPSGASIKQLEHFGQLMKSGHFRKFDRGY
LRNQLEYNRMTPPDYDLSRVKVPVALYYSVNDLLVSTTGVDRLARELPNV
IDKYLVPMERFNHLDFLWAIDVKPLVYNRLVRNVRRVENHRAKLTANLAN
YLAMQLQRQQLRQQMQQQMMEGLPPNVHLPHGLGMEMLARATTFAPVTHP
TTTMTMPTTTTENDAEDEVLTTAATATEVPAASFLDH

BO12254.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG31871-PA 531 CG31871-PA 1..531 1..531 2774 100 Plus
Lip4-PA 434 CG6113-PA 4..431 10..439 1097 46.4 Plus
Lip4-PB 432 CG6113-PB 4..429 10..439 1095 46.7 Plus
Lip4-PC 448 CG6113-PC 21..445 20..439 1094 47 Plus
CG18301-PA 422 CG18301-PA 34..396 67..431 987 49.1 Plus