Clone BO12256 Report

Search the DGRC for BO12256

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:122
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG6259-RA
Protein status:BO12256.pep: validated full length
Sequenced Size:712

Clone Sequence Records

BO12256.3prime Sequence

710 bp (709 high quality bases) assembled on 2006-04-20

> BO12256.3prime
ATGGTCTAGAAAGCTTGCTGTGGTCTTCAGCGATGTCGGAATCTTGGGCA
AGCCGAACTCATCCGTTTCAATGGTGCTCTTTCCAGGGACGATGCTGTCA
GCTCCCGGCTCTCGACTCGGCGCCTCCGGAGCCTTGACCACGTCATCCAA
ATAGCTGGTGTCATCGTCCAAGGCAATCTCATCGCCCAGAGCATCCAACT
CGGCCTGCAGGTCGTCGTCATCCACCTCAGGCATGCCGTACGTGCGGCCC
AGTGCCTCCTGCACCTCGTCCGCCTGCTCAAACATATCAGCCATGTCGTC
TTGGATGTCCTCGATCTGGTCGATGTTGATCTTCTTGTACTCGGTCTTCA
TCTGCTTGACTCCATCCTTCATGGCCGCCACGGTGGCCTGAGTATCCTTC
AAGGATTGCGCCGCATAGTTGGCCTGTTCCATGTTGAACGACTGGTTGCG
CAGAGATTCTGCCTGCTGTTCGTAGGCCTTCTTTTGTTTGAGAACCCGGA
GGGCCTTCTGTTTCACGGAGTTCTTGGCAGGACCTTCTCGCATCTTGGAC
ATTTGTTCGCGGTATTTGCGCAGCTCTGCCTCCAGATTACTGATCTTCTC
TTCGATGTTTGTTGCTCGGGCATCGACCCCGGCGATGCAATCGTTTAGAC
TTGGACCCGGCTCCTTGGGCTTACCACGACCAAAAAGGCGATTCATGTCG
ACTGATAACT

BO12256.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6259-PA 681 CG6259-RA 1..678 696..19 3390 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
Vps60-RB 1100 CG6259-RB 240..925 704..19 3400 99.7 Minus
Vps60-RA 980 CG6259-RA 120..805 704..19 3400 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17620419..17620651 79..311 1165 100 Plus
3L 28110227 3L 17620728..17620894 309..475 835 100 Plus
3L 28110227 3L 17621096..17621253 471..628 775 99.4 Plus
3L 28110227 3L 17621308..17621386 626..704 365 97.5 Plus
3L 28110227 3L 17620298..17620359 19..80 310 100 Plus
Blast to na_te.dros performed 2015-02-10 18:47:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 3561..3670 400..292 115 57.3 Minus

BO12256.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:42 Download gff for BO12256.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6259-PA 1..681 18..696 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:18 Download gff for BO12256.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6259-PA 1..681 18..696 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:48:45 Download gff for BO12256.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6259-RA 120..815 12..704 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:01:17 Download gff for BO12256.3prime
Subject Subject Range Query Range Percent Splice Strand
Vps60-RA 120..815 12..704 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:17 Download gff for BO12256.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 17620288..17620357 12..78 95 <- Plus
3L 17620419..17620649 79..309 100 <- Plus
3L 17620729..17620894 310..475 100 <- Plus
3L 17621101..17621252 476..627 100 <- Plus
3L 17621310..17621386 628..704 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:48:45 Download gff for BO12256.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17614201..17614352 476..627 100 <- Plus
arm_3L 17613388..17613457 12..78 95 <- Plus
arm_3L 17613829..17613994 310..475 100 <- Plus
arm_3L 17613519..17613749 79..309 100 <- Plus
arm_3L 17614410..17614486 628..704 97   Plus

BO12256.5prime Sequence

710 bp (709 high quality bases) assembled on 2006-04-20

> BO12256.5prime
GAAGTTATCAGTCGACATGAATCGCCTTTTTGGTCGTGGTAAGCCCAAGG
AGCCGGGTCCAAGTCTAAACGATTGCATCGCCGGGGTCGATGCCCGAGCA
ACAAACATCGAAGAGAAGATCAGTAATCTGGAGGCAGAGCTGCGCAAATA
CCGCGAACAAATGTCCAAGATGCGAGAAGGTCCTGCCAAGAACTCCGTGA
AACAGAAGGCCCTCCGGGTTCTCAAACAAAAGAAGGCCTACGAACAGCAG
GCAGAATCTCTGCGCAACCAGTCGTTCAACATGGAACAGGCCAACTATGC
GGCGCAATCCTTGAAGGATACTCAGGCCACCGTGGCGGCCATGAAGGATG
GAGTCAAGCAGATGAAGACCGAGTACAAGAAGATCAACATCGACCAGATC
GAGGACATCCAAGACGACATGGCTGATATGTTTGAGCAGGCGGACGAGGT
GCAGGAGGCACTGGGCCGCACGTACGGCATGCCTGAGGTGGATGACGACG
ACCTGCAGGCCGAGTTGGATGCTCTGGGCGATGAGATTGCCTTGGACGAT
GACACCAGCTATTTGGATGACGTGGTCAAGGCTCCGGAGGCGCCGAGTCG
AGAGCCGGGAGCTGACAGCATCGTCCCTGGAAAGAGCACCATTGAAACGG
ATGAGTTCGGCTTGCCCAAGATTCCGACATCGCTGAAGACCACAGCAAGC
TTTCTAGACC

BO12256.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6259-PA 681 CG6259-RA 1..678 17..694 3390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
Vps60-RB 1100 CG6259-RB 240..925 9..694 3400 99.7 Plus
Vps60-RA 980 CG6259-RA 120..805 9..694 3400 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17620419..17620651 634..402 1165 100 Minus
3L 28110227 3L 17620728..17620894 404..238 835 100 Minus
3L 28110227 3L 17621096..17621253 242..85 775 99.4 Minus
3L 28110227 3L 17621308..17621386 87..9 365 97.5 Minus
3L 28110227 3L 17620298..17620359 694..633 310 100 Minus
Blast to na_te.dros performed 2015-02-10 22:53:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 3561..3670 313..421 115 57.3 Plus

BO12256.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:43 Download gff for BO12256.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6259-PA 1..681 17..695 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:20 Download gff for BO12256.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6259-PA 1..681 17..695 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:03:13 Download gff for BO12256.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6259-RA 120..815 9..701 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:14:48 Download gff for BO12256.5prime
Subject Subject Range Query Range Percent Splice Strand
Vps60-RA 120..815 9..701 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:14:48 Download gff for BO12256.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17620419..17620649 404..634 100 <- Minus
3L 17620729..17620894 238..403 100 <- Minus
3L 17621101..17621252 86..237 100 <- Minus
3L 17621310..17621386 9..85 97   Minus
3L 17620288..17620357 635..701 95 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:03:13 Download gff for BO12256.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17613388..17613457 635..701 95 <- Minus
arm_3L 17613519..17613749 404..634 100 <- Minus
arm_3L 17613829..17613994 238..403 100 <- Minus
arm_3L 17614201..17614352 86..237 100 <- Minus
arm_3L 17614410..17614486 9..85 97   Minus

BO12256.complete Sequence

712 bp assembled on 2006-10-11

GenBank Submission: FJ632383

> BO12256.complete
GAAGTTATCAGTCGACATGAATCGCCTTTTTGGTCGTGGTAAGCCCAAGG
AGCCGGGTCCAAGTCTAAACGATTGCATCGCCGGGGTCGATGCCCGAGCA
ACAAACATCGAAGAGAAGATCAGTAATCTGGAGGCAGAGCTGCGCAAATA
CCGCGAACAAATGTCCAAGATGCGAGAAGGTCCTGCCAAGAACTCCGTGA
AACAGAAGGCCCTCCGGGTTCTCAAACAAAAGAAGGCCTACGAACAGCAG
GCAGAATCTCTGCGCAACCAGTCGTTCAACATGGAACAGGCCAACTATGC
GGCGCAATCCTTGAAGGATACTCAGGCCACCGTGGCGGCCATGAAGGATG
GAGTCAAGCAGATGAAGACCGAGTACAAGAAGATCAACATCGACCAGATC
GAGGACATCCAAGACGACATGGCTGATATGTTTGAGCAGGCGGACGAGGT
GCAGGAGGCACTGGGCCGCACGTACGGCATGCCTGAGGTGGATGACGACG
ACCTGCAGGCCGAGTTGGATGCTCTGGGCGATGAGATTGCCTTGGACGAT
GACACCAGCTATTTGGATGACGTGGTCAAGGCTCCGGAGGCGCCGAGTCG
AGAGCCGGGAGCTGACAGCATCGTCCCTGGAAAGAGCACCATTGAAACGG
ATGAGTTCGGCTTGCCCAAGATTCCGACATCGCTGAAGACCACAGCAAGC
TTTCTAGACCAT

BO12256.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
Vps60-RB 681 CG6259-PB 1..678 17..694 3390 100 Plus
Vps60-RA 681 CG6259-PA 1..678 17..694 3390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
Vps60-RB 1100 CG6259-RB 240..925 9..694 3400 99.7 Plus
Vps60-RA 980 CG6259-RA 120..805 9..694 3400 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17620419..17620651 634..402 1165 100 Minus
3L 28110227 3L 17620728..17620894 404..238 835 100 Minus
3L 28110227 3L 17621096..17621253 242..85 775 99.4 Minus
3L 28110227 3L 17621308..17621386 87..9 365 97.5 Minus
3L 28110227 3L 17620298..17620359 694..633 310 100 Minus
Blast to na_te.dros performed 2014-11-27 00:54:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 3561..3670 313..421 115 57.3 Plus

BO12256.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:55 Download gff for BO12256.complete
Subject Subject Range Query Range Percent Splice Strand
CG6259-RA 1..681 17..695 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:28 Download gff for BO12256.complete
Subject Subject Range Query Range Percent Splice Strand
CG6259-RA 113..808 9..701 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:37:54 Download gff for BO12256.complete
Subject Subject Range Query Range Percent Splice Strand
CG6259-RA 128..805 17..696 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:55 Download gff for BO12256.complete
Subject Subject Range Query Range Percent Splice Strand
CG6259-RA 113..808 9..701 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:01 Download gff for BO12256.complete
Subject Subject Range Query Range Percent Splice Strand
Vps60-RA 128..805 17..696 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:01 Download gff for BO12256.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17620296..17620357 635..696 96 <- Minus
3L 17620419..17620649 404..634 100 <- Minus
3L 17620729..17620894 238..403 100 <- Minus
3L 17621101..17621252 86..237 100 <- Minus
3L 17621310..17621378 17..85 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:37:54 Download gff for BO12256.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17613396..17613457 635..696 96 <- Minus
arm_3L 17613519..17613749 404..634 100 <- Minus
arm_3L 17613829..17613994 238..403 100 <- Minus
arm_3L 17614201..17614352 86..237 100 <- Minus
arm_3L 17614410..17614478 17..85 100   Minus

BO12256.pep Sequence

Translation from 16 to 712

> BO12256.pep
MNRLFGRGKPKEPGPSLNDCIAGVDARATNIEEKISNLEAELRKYREQMS
KMREGPAKNSVKQKALRVLKQKKAYEQQAESLRNQSFNMEQANYAAQSLK
DTQATVAAMKDGVKQMKTEYKKINIDQIEDIQDDMADMFEQADEVQEALG
RTYGMPEVDDDDLQAELDALGDEIALDDDTSYLDDVVKAPEAPSREPGAD
SIVPGKSTIETDEFGLPKIPTSLKTTASFLDH

BO12256.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:13
Subject Length Description Subject Range Query Range Score Percent Strand
Vps60-PB 226 CG6259-PB 1..226 1..226 1144 100 Plus
Vps60-PA 226 CG6259-PA 1..226 1..226 1144 100 Plus
shrb-PA 226 CG8055-PA 4..193 5..196 191 26.7 Plus