Clone Sequence Records
BO12256.3prime Sequence
710 bp (709 high quality bases) assembled on 2006-04-20
> BO12256.3prime
ATGGTCTAGAAAGCTTGCTGTGGTCTTCAGCGATGTCGGAATCTTGGGCA
AGCCGAACTCATCCGTTTCAATGGTGCTCTTTCCAGGGACGATGCTGTCA
GCTCCCGGCTCTCGACTCGGCGCCTCCGGAGCCTTGACCACGTCATCCAA
ATAGCTGGTGTCATCGTCCAAGGCAATCTCATCGCCCAGAGCATCCAACT
CGGCCTGCAGGTCGTCGTCATCCACCTCAGGCATGCCGTACGTGCGGCCC
AGTGCCTCCTGCACCTCGTCCGCCTGCTCAAACATATCAGCCATGTCGTC
TTGGATGTCCTCGATCTGGTCGATGTTGATCTTCTTGTACTCGGTCTTCA
TCTGCTTGACTCCATCCTTCATGGCCGCCACGGTGGCCTGAGTATCCTTC
AAGGATTGCGCCGCATAGTTGGCCTGTTCCATGTTGAACGACTGGTTGCG
CAGAGATTCTGCCTGCTGTTCGTAGGCCTTCTTTTGTTTGAGAACCCGGA
GGGCCTTCTGTTTCACGGAGTTCTTGGCAGGACCTTCTCGCATCTTGGAC
ATTTGTTCGCGGTATTTGCGCAGCTCTGCCTCCAGATTACTGATCTTCTC
TTCGATGTTTGTTGCTCGGGCATCGACCCCGGCGATGCAATCGTTTAGAC
TTGGACCCGGCTCCTTGGGCTTACCACGACCAAAAAGGCGATTCATGTCG
ACTGATAACT
BO12256.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6259-PA | 681 | CG6259-RA | 1..678 | 696..19 | 3390 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:48:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps60-RB | 1100 | CG6259-RB | 240..925 | 704..19 | 3400 | 99.7 | Minus |
Vps60-RA | 980 | CG6259-RA | 120..805 | 704..19 | 3400 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17620419..17620651 | 79..311 | 1165 | 100 | Plus |
3L | 28110227 | 3L | 17620728..17620894 | 309..475 | 835 | 100 | Plus |
3L | 28110227 | 3L | 17621096..17621253 | 471..628 | 775 | 99.4 | Plus |
3L | 28110227 | 3L | 17621308..17621386 | 626..704 | 365 | 97.5 | Plus |
3L | 28110227 | 3L | 17620298..17620359 | 19..80 | 310 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 18:47:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 3561..3670 | 400..292 | 115 | 57.3 | Minus |
BO12256.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:42 Download gff for
BO12256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6259-PA | 1..681 | 18..696 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:18 Download gff for
BO12256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6259-PA | 1..681 | 18..696 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:48:45 Download gff for
BO12256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6259-RA | 120..815 | 12..704 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:01:17 Download gff for
BO12256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps60-RA | 120..815 | 12..704 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:17 Download gff for
BO12256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17620288..17620357 | 12..78 | 95 | <- | Plus |
3L | 17620419..17620649 | 79..309 | 100 | <- | Plus |
3L | 17620729..17620894 | 310..475 | 100 | <- | Plus |
3L | 17621101..17621252 | 476..627 | 100 | <- | Plus |
3L | 17621310..17621386 | 628..704 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:48:45 Download gff for
BO12256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17614201..17614352 | 476..627 | 100 | <- | Plus |
arm_3L | 17613388..17613457 | 12..78 | 95 | <- | Plus |
arm_3L | 17613829..17613994 | 310..475 | 100 | <- | Plus |
arm_3L | 17613519..17613749 | 79..309 | 100 | <- | Plus |
arm_3L | 17614410..17614486 | 628..704 | 97 | | Plus |
BO12256.5prime Sequence
710 bp (709 high quality bases) assembled on 2006-04-20
> BO12256.5prime
GAAGTTATCAGTCGACATGAATCGCCTTTTTGGTCGTGGTAAGCCCAAGG
AGCCGGGTCCAAGTCTAAACGATTGCATCGCCGGGGTCGATGCCCGAGCA
ACAAACATCGAAGAGAAGATCAGTAATCTGGAGGCAGAGCTGCGCAAATA
CCGCGAACAAATGTCCAAGATGCGAGAAGGTCCTGCCAAGAACTCCGTGA
AACAGAAGGCCCTCCGGGTTCTCAAACAAAAGAAGGCCTACGAACAGCAG
GCAGAATCTCTGCGCAACCAGTCGTTCAACATGGAACAGGCCAACTATGC
GGCGCAATCCTTGAAGGATACTCAGGCCACCGTGGCGGCCATGAAGGATG
GAGTCAAGCAGATGAAGACCGAGTACAAGAAGATCAACATCGACCAGATC
GAGGACATCCAAGACGACATGGCTGATATGTTTGAGCAGGCGGACGAGGT
GCAGGAGGCACTGGGCCGCACGTACGGCATGCCTGAGGTGGATGACGACG
ACCTGCAGGCCGAGTTGGATGCTCTGGGCGATGAGATTGCCTTGGACGAT
GACACCAGCTATTTGGATGACGTGGTCAAGGCTCCGGAGGCGCCGAGTCG
AGAGCCGGGAGCTGACAGCATCGTCCCTGGAAAGAGCACCATTGAAACGG
ATGAGTTCGGCTTGCCCAAGATTCCGACATCGCTGAAGACCACAGCAAGC
TTTCTAGACC
BO12256.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6259-PA | 681 | CG6259-RA | 1..678 | 17..694 | 3390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:53:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps60-RB | 1100 | CG6259-RB | 240..925 | 9..694 | 3400 | 99.7 | Plus |
Vps60-RA | 980 | CG6259-RA | 120..805 | 9..694 | 3400 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:53:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17620419..17620651 | 634..402 | 1165 | 100 | Minus |
3L | 28110227 | 3L | 17620728..17620894 | 404..238 | 835 | 100 | Minus |
3L | 28110227 | 3L | 17621096..17621253 | 242..85 | 775 | 99.4 | Minus |
3L | 28110227 | 3L | 17621308..17621386 | 87..9 | 365 | 97.5 | Minus |
3L | 28110227 | 3L | 17620298..17620359 | 694..633 | 310 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 22:53:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 3561..3670 | 313..421 | 115 | 57.3 | Plus |
BO12256.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:43 Download gff for
BO12256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6259-PA | 1..681 | 17..695 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:20 Download gff for
BO12256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6259-PA | 1..681 | 17..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:03:13 Download gff for
BO12256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6259-RA | 120..815 | 9..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:14:48 Download gff for
BO12256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps60-RA | 120..815 | 9..701 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:14:48 Download gff for
BO12256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17620419..17620649 | 404..634 | 100 | <- | Minus |
3L | 17620729..17620894 | 238..403 | 100 | <- | Minus |
3L | 17621101..17621252 | 86..237 | 100 | <- | Minus |
3L | 17621310..17621386 | 9..85 | 97 | | Minus |
3L | 17620288..17620357 | 635..701 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:03:13 Download gff for
BO12256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17613388..17613457 | 635..701 | 95 | <- | Minus |
arm_3L | 17613519..17613749 | 404..634 | 100 | <- | Minus |
arm_3L | 17613829..17613994 | 238..403 | 100 | <- | Minus |
arm_3L | 17614201..17614352 | 86..237 | 100 | <- | Minus |
arm_3L | 17614410..17614486 | 9..85 | 97 | | Minus |
BO12256.complete Sequence
712 bp assembled on 2006-10-11
GenBank Submission: FJ632383
> BO12256.complete
GAAGTTATCAGTCGACATGAATCGCCTTTTTGGTCGTGGTAAGCCCAAGG
AGCCGGGTCCAAGTCTAAACGATTGCATCGCCGGGGTCGATGCCCGAGCA
ACAAACATCGAAGAGAAGATCAGTAATCTGGAGGCAGAGCTGCGCAAATA
CCGCGAACAAATGTCCAAGATGCGAGAAGGTCCTGCCAAGAACTCCGTGA
AACAGAAGGCCCTCCGGGTTCTCAAACAAAAGAAGGCCTACGAACAGCAG
GCAGAATCTCTGCGCAACCAGTCGTTCAACATGGAACAGGCCAACTATGC
GGCGCAATCCTTGAAGGATACTCAGGCCACCGTGGCGGCCATGAAGGATG
GAGTCAAGCAGATGAAGACCGAGTACAAGAAGATCAACATCGACCAGATC
GAGGACATCCAAGACGACATGGCTGATATGTTTGAGCAGGCGGACGAGGT
GCAGGAGGCACTGGGCCGCACGTACGGCATGCCTGAGGTGGATGACGACG
ACCTGCAGGCCGAGTTGGATGCTCTGGGCGATGAGATTGCCTTGGACGAT
GACACCAGCTATTTGGATGACGTGGTCAAGGCTCCGGAGGCGCCGAGTCG
AGAGCCGGGAGCTGACAGCATCGTCCCTGGAAAGAGCACCATTGAAACGG
ATGAGTTCGGCTTGCCCAAGATTCCGACATCGCTGAAGACCACAGCAAGC
TTTCTAGACCAT
BO12256.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:54:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps60-RB | 681 | CG6259-PB | 1..678 | 17..694 | 3390 | 100 | Plus |
Vps60-RA | 681 | CG6259-PA | 1..678 | 17..694 | 3390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps60-RB | 1100 | CG6259-RB | 240..925 | 9..694 | 3400 | 99.7 | Plus |
Vps60-RA | 980 | CG6259-RA | 120..805 | 9..694 | 3400 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17620419..17620651 | 634..402 | 1165 | 100 | Minus |
3L | 28110227 | 3L | 17620728..17620894 | 404..238 | 835 | 100 | Minus |
3L | 28110227 | 3L | 17621096..17621253 | 242..85 | 775 | 99.4 | Minus |
3L | 28110227 | 3L | 17621308..17621386 | 87..9 | 365 | 97.5 | Minus |
3L | 28110227 | 3L | 17620298..17620359 | 694..633 | 310 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:54:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 3561..3670 | 313..421 | 115 | 57.3 | Plus |
BO12256.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:55 Download gff for
BO12256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6259-RA | 1..681 | 17..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:28 Download gff for
BO12256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6259-RA | 113..808 | 9..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:37:54 Download gff for
BO12256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6259-RA | 128..805 | 17..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:55 Download gff for
BO12256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6259-RA | 113..808 | 9..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:01 Download gff for
BO12256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps60-RA | 128..805 | 17..696 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:01 Download gff for
BO12256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17620296..17620357 | 635..696 | 96 | <- | Minus |
3L | 17620419..17620649 | 404..634 | 100 | <- | Minus |
3L | 17620729..17620894 | 238..403 | 100 | <- | Minus |
3L | 17621101..17621252 | 86..237 | 100 | <- | Minus |
3L | 17621310..17621378 | 17..85 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:37:54 Download gff for
BO12256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17613396..17613457 | 635..696 | 96 | <- | Minus |
arm_3L | 17613519..17613749 | 404..634 | 100 | <- | Minus |
arm_3L | 17613829..17613994 | 238..403 | 100 | <- | Minus |
arm_3L | 17614201..17614352 | 86..237 | 100 | <- | Minus |
arm_3L | 17614410..17614478 | 17..85 | 100 | | Minus |
BO12256.pep Sequence
Translation from 16 to 712
> BO12256.pep
MNRLFGRGKPKEPGPSLNDCIAGVDARATNIEEKISNLEAELRKYREQMS
KMREGPAKNSVKQKALRVLKQKKAYEQQAESLRNQSFNMEQANYAAQSLK
DTQATVAAMKDGVKQMKTEYKKINIDQIEDIQDDMADMFEQADEVQEALG
RTYGMPEVDDDDLQAELDALGDEIALDDDTSYLDDVVKAPEAPSREPGAD
SIVPGKSTIETDEFGLPKIPTSLKTTASFLDH
BO12256.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps60-PB | 226 | CG6259-PB | 1..226 | 1..226 | 1144 | 100 | Plus |
Vps60-PA | 226 | CG6259-PA | 1..226 | 1..226 | 1144 | 100 | Plus |
shrb-PA | 226 | CG8055-PA | 4..193 | 5..196 | 191 | 26.7 | Plus |