Clone BO12258 Report

Search the DGRC for BO12258

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:122
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG10592-RA
Protein status:BO12258.pep: validated full length
Sequenced Size:1606

Clone Sequence Records

BO12258.3prime Sequence

822 bp (802 high quality bases) assembled on 2006-04-20

> BO12258.3prime
ATGGTCTAGAAAGCTTGCTTGCTCATTAATCTTGTCCTTGGCAAATGGTC
CAATGTTGGCTGCATAAGCCATCATGGCTGGGATGGCACTCTGCTCATAA
TTGCCGGTGAACAGGTGCTCGAAGGGACCGGAGGCAAAGACACCCACATC
CTCAGCGCCGTGGGTTTCGCTGCTCAAGGGAACCGTGGCCTGGAACTCAA
ACTCTGCGCTTGTGGTGTCCGCATGGGAAAGATCAATGCGTCCATCTTTA
GTGCTGTAGGTATCATCAAATCCTGGACCATTGGCATACGACAAGATGGT
AAAGGGAAGCTCATCATCAGCCAGATTGGGAGCAAGGGAAAGGATGTTCT
GTCGACGGTACGGATAGCCGTTGATAGACATGGTGTGCGAGTGATCCGAT
GTCACCACAATCAGCGTGTCCTCCTCGTCGGTCATTTTCCTAGCCAGTTC
CACGGCTGCCGCGAATTCTTCGGTGTCCTCCAGAGCCTTCATCGCCTTGG
TGGCGTGATGGGCCATATCAATGCGTCCACTCTCCACGAAGAGGAAGTAA
CCCTCCTCGTTCTTGCTGAGCATCTTGATGGCCGCTTCTGTCATGTCGGA
AAGGGATGGCTCTGCATCTTCATAATGGGTACGGCGACGATCGCCATGGT
AGGGCAGATGGGAGGTGTCGAAGAGACCGAGAAGGTAATCCGTCTTGCTA
ATATCCGTTTCCTTCAGGCCCTTAAGTGACCAGACGTACTTGCCCTCCGC
TCCCTGCTGTTTCTTGATCTCTCGCCAATCGCTGATCAGATCGCGTCCAT
CGGTTCGCAAGCCCGAAACGCC

BO12258.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG10592-PA 1575 CG10592-RA 769..1572 822..19 4020 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG10592-RA 1749 CG10592-RA 831..1634 822..19 4020 100 Minus
CG5150-RB 1881 CG5150-RB 1172..1235 445..382 185 85.9 Minus
CG5150-RA 1796 CG5150-RA 1172..1235 445..382 185 85.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:00:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5593267..5593728 361..822 2310 100 Plus
3L 28110227 3L 5592856..5593198 19..361 1715 100 Plus
3L 28110227 3L 5596713..5596776 445..382 185 85.9 Minus
Blast to na_te.dros performed on 2015-02-10 23:00:54 has no hits.

BO12258.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:46 Download gff for BO12258.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10592-PA 769..1575 15..822 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:24 Download gff for BO12258.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10592-PA 769..1575 15..822 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:50:33 Download gff for BO12258.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10592-RA 831..1639 14..822 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:13:14 Download gff for BO12258.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10592-RA 831..1639 14..822 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:13:14 Download gff for BO12258.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5592851..5593197 14..360 99 <- Plus
3L 5593267..5593728 361..822 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:50:33 Download gff for BO12258.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5585951..5586297 14..360 99 <- Plus
arm_3L 5586367..5586828 361..822 100   Plus

BO12258.5prime Sequence

863 bp (822 high quality bases) assembled on 2006-04-20

> BO12258.5prime
GAAGTTATCAGTCGACATGGTAAAGAGTTGCCTGATCTTGTGCTTCTTCG
CTCTCCTGGTCATCCAGGCCCGGAGTGATCTAGCCGATGACCAAGAGCAC
GCCCAACATCCCCGTCTGCAATCATCACGCGACTTCGAGGCCCTCGACGA
GGAGCTGGACACACGATTCTGGCACGATAAGGCCCAATCGATTCTGGCCG
ATAAGCTGGCCGGCCATAAAAAGCTCAACGAGAATCGCGCCAAGAACGTG
ATCCTATTTTTGGGCGATGGCATGTCCGTTCACACGATCGCGGCCACACG
TGCTTTCATGGGCGATAGCAACAAGCAGGTCTTCTTCGAGAAGTTCCCCT
ACTTGGGTCTGTCCAAGACGTATGCCGTCAACGAGCGTACTCCGGACTCG
GCCAACACTGCTACGGCCTATTTGACCGGAGTCAAGGCCAACTATGGCAC
CATTGGAGTCAATGCCCAGGTGCAGAGGGGCGACTGTGTGACCAATTCGA
GTAGCCATGTCCAGAGCATTGGTCAGTGGGCCCAGGAGGCCGGCAAGTGG
GCCGGTTTGGTGACCACCGCCCGGGTGACACACGCTTCTCCAGCCGGAGT
TTATGCCCATGTTTCCGAACGGAATTGGGAGCACGATGGTGAAATCATCA
GCTCCAAATGCAGTCCCGACGTCAACACCGATATTGCCCGGCAGCTGGTC
GAGTGGCCAGTGGGTCAGGAACTACGCGTCATCATGGGCGGCGGTCGATC
CTATTTTCGGGATCAGTCCCAGCACGATGAGACTGGCGTTTCGGGCTTGC
GAACCGATGGACGCGATCTGATCAGCGATTGGCGAGAGATCAAGAAACAG
CAGGGAGCGGAGG

BO12258.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG10592-PA 1575 CG10592-RA 1..847 17..863 4235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:52:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG10592-RA 1749 CG10592-RA 63..909 17..863 4235 100 Plus
CG10827-RA 1674 CG10827-RA 558..642 525..609 185 81.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:52:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5593650..5594412 863..101 3815 100 Minus
3L 28110227 3L 5595126..5595210 101..17 425 100 Minus
3R 32079331 3R 21006349..21006433 609..525 185 81.2 Minus
Blast to na_te.dros performed on 2015-02-10 22:52:48 has no hits.

BO12258.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:47 Download gff for BO12258.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10592-PA 1..847 17..863 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:26 Download gff for BO12258.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10592-PA 1..847 17..863 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:03:10 Download gff for BO12258.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10592-RA 63..909 17..863 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:14:14 Download gff for BO12258.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10592-RA 63..909 17..863 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:14:14 Download gff for BO12258.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5593650..5594411 102..863 100 <- Minus
3L 5595126..5595210 17..101 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:03:10 Download gff for BO12258.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5586750..5587511 102..863 100 <- Minus
arm_3L 5588226..5588310 17..101 100   Minus

BO12258.complete Sequence

1606 bp assembled on 2007-06-22

GenBank Submission: FJ632384

> BO12258.complete
GAAGTTATCAGTCGACATGGTAAAGAGTTGCCTGATCTTGTGCTTCTTCG
CTCTCCTGGTCATCCAGGCCCGGAGTGATCTAGCCGATGACCAAGAGCAC
GCCCAACATCCCCGTCTGCAATCATCACGCGACTTCGAGGCCCTCGACGA
GGAGCTGGACACACGATTCTGGCACGATAAGGCCCAATCGATTCTGGCCG
ATAAGCTGGCCGGCCATAAAAAGCTCAACGAGAATCGCGCCAAGAACGTG
ATCCTATTTTTGGGCGATGGCATGTCCGTTCACACGATCGCGGCCACACG
TGCTTTCATGGGCGATAGCAACAAGCAGGTCTTCTTCGAGAAGTTCCCCT
ACTTGGGTCTGTCCAAGACGTATGCCGTCAACGAGCGTACTCCGGACTCG
GCCAACACTGCTACGGCCTATTTGACCGGAGTCAAGGCCAACTATGGCAC
CATTGGAGTCAATGCCCAGGTGCAGAGGGGCGACTGTGTGACCAATTCGA
GTAGCCATGTCCAGAGCATTGGTCAGTGGGCCCAGGAGGCCGGCAAGTGG
GCCGGTTTGGTGACCACCGCCCGGGTGACACACGCTTCTCCAGCCGGAGT
TTATGCCCATGTTTCCGAACGGAATTGGGAGCACGATGGTGAAATCATCA
GCTCCAAATGCAGTCCCGACGTCAACACCGATATTGCCCGGCAGCTGGTC
GAGTGGCCAGTGGGTCAGGAACTACGCGTCATCATGGGCGGCGGTCGATC
CTATTTTCGGGATCAGTCCCAGCACGATGAGACTGGCGTTTCGGGCTTGC
GAACCGATGGACGCGATCTGATCAGCGATTGGCGAGAGATCAAGAAACAG
CAGGGAGCGGAGGGCAAGTACGTCTGGTCACTTAAGGGCCTGAAGGAAAC
GGATATTAGCAAGACGGATTACCTTCTCGGTCTCTTCGACACCTCCCATC
TGCCCTACCATGGCGATCGTCGCCGTACCCATTATGAAGATGCAGAGCCA
TCCCTTTCCGACATGACAGAAGCGGCCATCAAGATGCTCAGCAAGAACGA
GGAGGGTTACTTCCTCTTCGTGGAGAGTGGACGCATTGATATGGCCCATC
ACGCCACCAAGGCGATGAAGGCTCTGGAGGACACCGAAGAATTCGCGGCA
GCCGTGGAACTGGCTAGGAAAATGACCGACGAGGAGGACACGCTGATTGT
GGTGACATCGGATCACTCGCACACCATGTCTATCAACGGCTATCCGTACC
GTCGACAGAACATCCTTTCCCTTGCTCCCAATCTGGCTGATGATGAGCTT
CCCTTTACCATCTTGTCGTATGCCAATGGTCCAGGATTTGATGATACCTA
CAGCACTAAAGATGGACGCATTGATCTTTCCCATGCGGACACCACAAGCG
CAGAGTTTGAGTTCCAGGCCACGGTTCCCTTGAGCAGCGAAACCCACGGC
GCTGAGGATGTGGGTGTCTTTGCCTCCGGTCCCTTCGAGCACCTGTTCAC
CGGCAATTATGAGCAGAGTGCCATCCCAGCCATGATGGCTTATGCAGCCA
ACATTGGACCATTTGCCAAGGACAAGATTAATGAGCAAGCAAGCTTTCTA
GACCAT

BO12258.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:25:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10592-RA 1575 CG10592-PA 1..1572 17..1588 7860 100 Plus
CG10827-RA 1569 CG10827-PA 542..626 525..609 185 81.2 Plus
CG5150-RB 1554 CG5150-PB 1128..1191 1162..1225 185 85.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG10592-RA 1749 CG10592-RA 63..1634 17..1588 7860 100 Plus
CG10827-RA 1674 CG10827-RA 558..642 525..609 185 81.2 Plus
CG5150-RB 1881 CG5150-RB 1172..1235 1162..1225 185 85.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:25:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5593267..5594412 1246..101 5730 100 Minus
3L 28110227 3L 5592856..5593198 1588..1246 1715 100 Minus
3L 28110227 3L 5595126..5595210 101..17 425 100 Minus
3L 28110227 3L 5596713..5596776 1162..1225 185 85.9 Plus
3R 32079331 3R 21006349..21006433 609..525 185 81.2 Minus
Blast to na_te.dros performed on 2014-11-26 15:25:23 has no hits.

BO12258.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:25 Download gff for BO12258.complete
Subject Subject Range Query Range Percent Splice Strand
CG10592-RA 1..1575 17..1592 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:25:04 Download gff for BO12258.complete
Subject Subject Range Query Range Percent Splice Strand
CG10592-RA 63..1639 17..1593 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:37 Download gff for BO12258.complete
Subject Subject Range Query Range Percent Splice Strand
CG10592-RA 63..1634 17..1590 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:25 Download gff for BO12258.complete
Subject Subject Range Query Range Percent Splice Strand
CG10592-RA 63..1639 17..1593 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:49 Download gff for BO12258.complete
Subject Subject Range Query Range Percent Splice Strand
CG10592-RA 63..1634 17..1590 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:49 Download gff for BO12258.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5592854..5593197 1247..1590 99 <- Minus
3L 5593267..5594411 102..1246 100 <- Minus
3L 5595126..5595210 17..101 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:37 Download gff for BO12258.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5585954..5586297 1247..1590 99 <- Minus
arm_3L 5586367..5587511 102..1246 100 <- Minus
arm_3L 5588226..5588310 17..101 100   Minus

BO12258.pep Sequence

Translation from 16 to 1606

> BO12258.pep
MVKSCLILCFFALLVIQARSDLADDQEHAQHPRLQSSRDFEALDEELDTR
FWHDKAQSILADKLAGHKKLNENRAKNVILFLGDGMSVHTIAATRAFMGD
SNKQVFFEKFPYLGLSKTYAVNERTPDSANTATAYLTGVKANYGTIGVNA
QVQRGDCVTNSSSHVQSIGQWAQEAGKWAGLVTTARVTHASPAGVYAHVS
ERNWEHDGEIISSKCSPDVNTDIARQLVEWPVGQELRVIMGGGRSYFRDQ
SQHDETGVSGLRTDGRDLISDWREIKKQQGAEGKYVWSLKGLKETDISKT
DYLLGLFDTSHLPYHGDRRRTHYEDAEPSLSDMTEAAIKMLSKNEEGYFL
FVESGRIDMAHHATKAMKALEDTEEFAAAVELARKMTDEEDTLIVVTSDH
SHTMSINGYPYRRQNILSLAPNLADDELPFTILSYANGPGFDDTYSTKDG
RIDLSHADTTSAEFEFQATVPLSSETHGAEDVGVFASGPFEHLFTGNYEQ
SAIPAMMAYAANIGPFAKDKINEQASFLDH

BO12258.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG10592-PA 524 CG10592-PA 1..524 1..524 2736 100 Plus
CG1809-PA 515 CG1809-PA 5..515 11..517 1488 57.9 Plus
CG5150-PB 517 CG5150-PB 29..510 27..514 1124 48.1 Plus
CG5150-PA 517 CG5150-PA 29..510 27..514 1124 48.1 Plus
CG10827-PA 522 CG10827-PA 33..515 26..514 1104 46.8 Plus