Clone Sequence Records
BO12258.3prime Sequence
822 bp (802 high quality bases) assembled on 2006-04-20
> BO12258.3prime
ATGGTCTAGAAAGCTTGCTTGCTCATTAATCTTGTCCTTGGCAAATGGTC
CAATGTTGGCTGCATAAGCCATCATGGCTGGGATGGCACTCTGCTCATAA
TTGCCGGTGAACAGGTGCTCGAAGGGACCGGAGGCAAAGACACCCACATC
CTCAGCGCCGTGGGTTTCGCTGCTCAAGGGAACCGTGGCCTGGAACTCAA
ACTCTGCGCTTGTGGTGTCCGCATGGGAAAGATCAATGCGTCCATCTTTA
GTGCTGTAGGTATCATCAAATCCTGGACCATTGGCATACGACAAGATGGT
AAAGGGAAGCTCATCATCAGCCAGATTGGGAGCAAGGGAAAGGATGTTCT
GTCGACGGTACGGATAGCCGTTGATAGACATGGTGTGCGAGTGATCCGAT
GTCACCACAATCAGCGTGTCCTCCTCGTCGGTCATTTTCCTAGCCAGTTC
CACGGCTGCCGCGAATTCTTCGGTGTCCTCCAGAGCCTTCATCGCCTTGG
TGGCGTGATGGGCCATATCAATGCGTCCACTCTCCACGAAGAGGAAGTAA
CCCTCCTCGTTCTTGCTGAGCATCTTGATGGCCGCTTCTGTCATGTCGGA
AAGGGATGGCTCTGCATCTTCATAATGGGTACGGCGACGATCGCCATGGT
AGGGCAGATGGGAGGTGTCGAAGAGACCGAGAAGGTAATCCGTCTTGCTA
ATATCCGTTTCCTTCAGGCCCTTAAGTGACCAGACGTACTTGCCCTCCGC
TCCCTGCTGTTTCTTGATCTCTCGCCAATCGCTGATCAGATCGCGTCCAT
CGGTTCGCAAGCCCGAAACGCC
BO12258.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10592-PA | 1575 | CG10592-RA | 769..1572 | 822..19 | 4020 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:00:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10592-RA | 1749 | CG10592-RA | 831..1634 | 822..19 | 4020 | 100 | Minus |
CG5150-RB | 1881 | CG5150-RB | 1172..1235 | 445..382 | 185 | 85.9 | Minus |
CG5150-RA | 1796 | CG5150-RA | 1172..1235 | 445..382 | 185 | 85.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:00:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5593267..5593728 | 361..822 | 2310 | 100 | Plus |
3L | 28110227 | 3L | 5592856..5593198 | 19..361 | 1715 | 100 | Plus |
3L | 28110227 | 3L | 5596713..5596776 | 445..382 | 185 | 85.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:00:54 has no hits.
BO12258.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:46 Download gff for
BO12258.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10592-PA | 769..1575 | 15..822 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:24 Download gff for
BO12258.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10592-PA | 769..1575 | 15..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:50:33 Download gff for
BO12258.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10592-RA | 831..1639 | 14..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:13:14 Download gff for
BO12258.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10592-RA | 831..1639 | 14..822 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:13:14 Download gff for
BO12258.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5592851..5593197 | 14..360 | 99 | <- | Plus |
3L | 5593267..5593728 | 361..822 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:50:33 Download gff for
BO12258.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5585951..5586297 | 14..360 | 99 | <- | Plus |
arm_3L | 5586367..5586828 | 361..822 | 100 | | Plus |
BO12258.5prime Sequence
863 bp (822 high quality bases) assembled on 2006-04-20
> BO12258.5prime
GAAGTTATCAGTCGACATGGTAAAGAGTTGCCTGATCTTGTGCTTCTTCG
CTCTCCTGGTCATCCAGGCCCGGAGTGATCTAGCCGATGACCAAGAGCAC
GCCCAACATCCCCGTCTGCAATCATCACGCGACTTCGAGGCCCTCGACGA
GGAGCTGGACACACGATTCTGGCACGATAAGGCCCAATCGATTCTGGCCG
ATAAGCTGGCCGGCCATAAAAAGCTCAACGAGAATCGCGCCAAGAACGTG
ATCCTATTTTTGGGCGATGGCATGTCCGTTCACACGATCGCGGCCACACG
TGCTTTCATGGGCGATAGCAACAAGCAGGTCTTCTTCGAGAAGTTCCCCT
ACTTGGGTCTGTCCAAGACGTATGCCGTCAACGAGCGTACTCCGGACTCG
GCCAACACTGCTACGGCCTATTTGACCGGAGTCAAGGCCAACTATGGCAC
CATTGGAGTCAATGCCCAGGTGCAGAGGGGCGACTGTGTGACCAATTCGA
GTAGCCATGTCCAGAGCATTGGTCAGTGGGCCCAGGAGGCCGGCAAGTGG
GCCGGTTTGGTGACCACCGCCCGGGTGACACACGCTTCTCCAGCCGGAGT
TTATGCCCATGTTTCCGAACGGAATTGGGAGCACGATGGTGAAATCATCA
GCTCCAAATGCAGTCCCGACGTCAACACCGATATTGCCCGGCAGCTGGTC
GAGTGGCCAGTGGGTCAGGAACTACGCGTCATCATGGGCGGCGGTCGATC
CTATTTTCGGGATCAGTCCCAGCACGATGAGACTGGCGTTTCGGGCTTGC
GAACCGATGGACGCGATCTGATCAGCGATTGGCGAGAGATCAAGAAACAG
CAGGGAGCGGAGG
BO12258.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10592-PA | 1575 | CG10592-RA | 1..847 | 17..863 | 4235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:52:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10592-RA | 1749 | CG10592-RA | 63..909 | 17..863 | 4235 | 100 | Plus |
CG10827-RA | 1674 | CG10827-RA | 558..642 | 525..609 | 185 | 81.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:52:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5593650..5594412 | 863..101 | 3815 | 100 | Minus |
3L | 28110227 | 3L | 5595126..5595210 | 101..17 | 425 | 100 | Minus |
3R | 32079331 | 3R | 21006349..21006433 | 609..525 | 185 | 81.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:52:48 has no hits.
BO12258.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:47 Download gff for
BO12258.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10592-PA | 1..847 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:26 Download gff for
BO12258.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10592-PA | 1..847 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:03:10 Download gff for
BO12258.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10592-RA | 63..909 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:14:14 Download gff for
BO12258.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10592-RA | 63..909 | 17..863 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:14:14 Download gff for
BO12258.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5593650..5594411 | 102..863 | 100 | <- | Minus |
3L | 5595126..5595210 | 17..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:03:10 Download gff for
BO12258.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5586750..5587511 | 102..863 | 100 | <- | Minus |
arm_3L | 5588226..5588310 | 17..101 | 100 | | Minus |
BO12258.complete Sequence
1606 bp assembled on 2007-06-22
GenBank Submission: FJ632384
> BO12258.complete
GAAGTTATCAGTCGACATGGTAAAGAGTTGCCTGATCTTGTGCTTCTTCG
CTCTCCTGGTCATCCAGGCCCGGAGTGATCTAGCCGATGACCAAGAGCAC
GCCCAACATCCCCGTCTGCAATCATCACGCGACTTCGAGGCCCTCGACGA
GGAGCTGGACACACGATTCTGGCACGATAAGGCCCAATCGATTCTGGCCG
ATAAGCTGGCCGGCCATAAAAAGCTCAACGAGAATCGCGCCAAGAACGTG
ATCCTATTTTTGGGCGATGGCATGTCCGTTCACACGATCGCGGCCACACG
TGCTTTCATGGGCGATAGCAACAAGCAGGTCTTCTTCGAGAAGTTCCCCT
ACTTGGGTCTGTCCAAGACGTATGCCGTCAACGAGCGTACTCCGGACTCG
GCCAACACTGCTACGGCCTATTTGACCGGAGTCAAGGCCAACTATGGCAC
CATTGGAGTCAATGCCCAGGTGCAGAGGGGCGACTGTGTGACCAATTCGA
GTAGCCATGTCCAGAGCATTGGTCAGTGGGCCCAGGAGGCCGGCAAGTGG
GCCGGTTTGGTGACCACCGCCCGGGTGACACACGCTTCTCCAGCCGGAGT
TTATGCCCATGTTTCCGAACGGAATTGGGAGCACGATGGTGAAATCATCA
GCTCCAAATGCAGTCCCGACGTCAACACCGATATTGCCCGGCAGCTGGTC
GAGTGGCCAGTGGGTCAGGAACTACGCGTCATCATGGGCGGCGGTCGATC
CTATTTTCGGGATCAGTCCCAGCACGATGAGACTGGCGTTTCGGGCTTGC
GAACCGATGGACGCGATCTGATCAGCGATTGGCGAGAGATCAAGAAACAG
CAGGGAGCGGAGGGCAAGTACGTCTGGTCACTTAAGGGCCTGAAGGAAAC
GGATATTAGCAAGACGGATTACCTTCTCGGTCTCTTCGACACCTCCCATC
TGCCCTACCATGGCGATCGTCGCCGTACCCATTATGAAGATGCAGAGCCA
TCCCTTTCCGACATGACAGAAGCGGCCATCAAGATGCTCAGCAAGAACGA
GGAGGGTTACTTCCTCTTCGTGGAGAGTGGACGCATTGATATGGCCCATC
ACGCCACCAAGGCGATGAAGGCTCTGGAGGACACCGAAGAATTCGCGGCA
GCCGTGGAACTGGCTAGGAAAATGACCGACGAGGAGGACACGCTGATTGT
GGTGACATCGGATCACTCGCACACCATGTCTATCAACGGCTATCCGTACC
GTCGACAGAACATCCTTTCCCTTGCTCCCAATCTGGCTGATGATGAGCTT
CCCTTTACCATCTTGTCGTATGCCAATGGTCCAGGATTTGATGATACCTA
CAGCACTAAAGATGGACGCATTGATCTTTCCCATGCGGACACCACAAGCG
CAGAGTTTGAGTTCCAGGCCACGGTTCCCTTGAGCAGCGAAACCCACGGC
GCTGAGGATGTGGGTGTCTTTGCCTCCGGTCCCTTCGAGCACCTGTTCAC
CGGCAATTATGAGCAGAGTGCCATCCCAGCCATGATGGCTTATGCAGCCA
ACATTGGACCATTTGCCAAGGACAAGATTAATGAGCAAGCAAGCTTTCTA
GACCAT
BO12258.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:25:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10592-RA | 1575 | CG10592-PA | 1..1572 | 17..1588 | 7860 | 100 | Plus |
CG10827-RA | 1569 | CG10827-PA | 542..626 | 525..609 | 185 | 81.2 | Plus |
CG5150-RB | 1554 | CG5150-PB | 1128..1191 | 1162..1225 | 185 | 85.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:25:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10592-RA | 1749 | CG10592-RA | 63..1634 | 17..1588 | 7860 | 100 | Plus |
CG10827-RA | 1674 | CG10827-RA | 558..642 | 525..609 | 185 | 81.2 | Plus |
CG5150-RB | 1881 | CG5150-RB | 1172..1235 | 1162..1225 | 185 | 85.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:25:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5593267..5594412 | 1246..101 | 5730 | 100 | Minus |
3L | 28110227 | 3L | 5592856..5593198 | 1588..1246 | 1715 | 100 | Minus |
3L | 28110227 | 3L | 5595126..5595210 | 101..17 | 425 | 100 | Minus |
3L | 28110227 | 3L | 5596713..5596776 | 1162..1225 | 185 | 85.9 | Plus |
3R | 32079331 | 3R | 21006349..21006433 | 609..525 | 185 | 81.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:25:23 has no hits.
BO12258.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:25 Download gff for
BO12258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10592-RA | 1..1575 | 17..1592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:25:04 Download gff for
BO12258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10592-RA | 63..1639 | 17..1593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:37 Download gff for
BO12258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10592-RA | 63..1634 | 17..1590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:25 Download gff for
BO12258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10592-RA | 63..1639 | 17..1593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:49 Download gff for
BO12258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10592-RA | 63..1634 | 17..1590 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:49 Download gff for
BO12258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5592854..5593197 | 1247..1590 | 99 | <- | Minus |
3L | 5593267..5594411 | 102..1246 | 100 | <- | Minus |
3L | 5595126..5595210 | 17..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:37 Download gff for
BO12258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5585954..5586297 | 1247..1590 | 99 | <- | Minus |
arm_3L | 5586367..5587511 | 102..1246 | 100 | <- | Minus |
arm_3L | 5588226..5588310 | 17..101 | 100 | | Minus |
BO12258.pep Sequence
Translation from 16 to 1606
> BO12258.pep
MVKSCLILCFFALLVIQARSDLADDQEHAQHPRLQSSRDFEALDEELDTR
FWHDKAQSILADKLAGHKKLNENRAKNVILFLGDGMSVHTIAATRAFMGD
SNKQVFFEKFPYLGLSKTYAVNERTPDSANTATAYLTGVKANYGTIGVNA
QVQRGDCVTNSSSHVQSIGQWAQEAGKWAGLVTTARVTHASPAGVYAHVS
ERNWEHDGEIISSKCSPDVNTDIARQLVEWPVGQELRVIMGGGRSYFRDQ
SQHDETGVSGLRTDGRDLISDWREIKKQQGAEGKYVWSLKGLKETDISKT
DYLLGLFDTSHLPYHGDRRRTHYEDAEPSLSDMTEAAIKMLSKNEEGYFL
FVESGRIDMAHHATKAMKALEDTEEFAAAVELARKMTDEEDTLIVVTSDH
SHTMSINGYPYRRQNILSLAPNLADDELPFTILSYANGPGFDDTYSTKDG
RIDLSHADTTSAEFEFQATVPLSSETHGAEDVGVFASGPFEHLFTGNYEQ
SAIPAMMAYAANIGPFAKDKINEQASFLDH
BO12258.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:22:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10592-PA | 524 | CG10592-PA | 1..524 | 1..524 | 2736 | 100 | Plus |
CG1809-PA | 515 | CG1809-PA | 5..515 | 11..517 | 1488 | 57.9 | Plus |
CG5150-PB | 517 | CG5150-PB | 29..510 | 27..514 | 1124 | 48.1 | Plus |
CG5150-PA | 517 | CG5150-PA | 29..510 | 27..514 | 1124 | 48.1 | Plus |
CG10827-PA | 522 | CG10827-PA | 33..515 | 26..514 | 1104 | 46.8 | Plus |