Clone Sequence Records
BO12263.3prime Sequence
728 bp (698 high quality bases) assembled on 2006-04-20
> BO12263.3prime
ATGGTCTAGAAAGCTTGCCTCCGCGTTTACTCCTTCTTGGGCCATGGAGA
GGTGATGGCCGAAGACCTTGGGATGCTGATTGAGCAGCTTGGAGGCGAAT
TGCACCATTTGCTCGAATGTGAACTCCGCCTTGGCACGTGGTCCCCAAAG
GAAGAAAGTCTTGGAATCATCGTAAGCACTTAGCTGTGAGCGTTCCCGCT
TCAGATATTGTTGCTTCACAAACGTCTCCTCGATCTGTTTGCGCAGATTG
GGGCCGAAGTAGCCATGTTCTTCGTCTGGATAGATGTTGAGCATCTCCAG
CATAACGTACAGTTTCGAGTCCTCGATGCGGTTGCCGCGCAGGAAGATGT
ACATGAGAATAATATACAGCAGCGTGAACTGCGGCCGTTGAGCCGGCGTC
AGCTCGTGAATGGAGGCCACCGGCTCCTCCGCAGTGCAGATGAACGTCTT
GGTGGTCGCGTCCAGTGGGGTTAGTATTATACCGAATGTTTCGGCCAGCA
GATTAGTGACCAGCGGCAGGCGTTTCTTCAGTTCGCTCTTGTCCCCAGCC
ACCGCTATCAAATCCTTGTCCTTTATGGGAATCTTCTGGGCGGTATGATC
AAGGATGTAGTTTAGAATGGCGCGAACCTTGGCGTCGACCACATCGACGG
GTTGTTGCGCTTCCTGCGAGGGGATGGCATTCTGGCTCCTAGCTGCGCGA
GAAGTGCTAGCCATGTCGACTGATAACT
BO12263.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10059-PA | 699 | MAGE-RA | 1..696 | 714..19 | 3480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:26:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MAGE-RA | 943 | CG10059-RA | 112..812 | 719..19 | 3490 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:26:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7154369..7155069 | 19..719 | 3490 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-01-31 12:26:17 has no hits.
BO12263.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:52 Download gff for
BO12263.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MAGE-PA | 1..699 | 18..714 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:33 Download gff for
BO12263.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10059-PA | 1..699 | 18..714 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:59:58 Download gff for
BO12263.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MAGE-RA | 105..812 | 19..728 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:04:48 Download gff for
BO12263.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MAGE-RA | 105..812 | 19..728 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:04:48 Download gff for
BO12263.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7154369..7155075 | 19..728 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:59:58 Download gff for
BO12263.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2980091..2980797 | 19..728 | 99 | | Plus |
BO12263.5prime Sequence
728 bp (727 high quality bases) assembled on 2006-04-20
> BO12263.5prime
GAAGTTATCAGTCGACATGGCTAGCACTTCTCGCGCAGCTAGGAGCCAGA
ATGCCATCCCCTCGCAGGAAGCGCAACAACCCGTCGATGTGGTCGACGCC
AAGGTTCGCGCCATTCTAAACTACATCCTTGATCATACCGCCCAGAAGAT
TCCCATAAAGGACAAGGATTTGATAGCGGTGGCTGGGGACAAGAGCGAAC
TGAAGAAACGCCTGCCGCTGGTCACTAATCTGCTGGCCGAAACATTCGGT
ATAATACTAACCCCACTGGACGCGACCACCAAGACGTTCATCTGCACTGC
GGAGGAGCCGGTGGCCTCCATTCACGAGCTGACGCCGGCTCAACGGCCGC
AGTTCACGCTGCTGTATATTATTCTCATGTACATCTTCCTGCGCGGCAAC
CGCATCGAGGACTCGAAACTGTACGTTATGCTGGAGATGCTCAACATCTA
TCCAGACGAAGAACATGGCTACTTCGGCCCCAATCTGCGCAAACAGATCG
AGGAGACGTTTGTGAAGCAACAATATCTGAAGCGGGAACGCTCACAGCTA
AGTGCTTACGATGATTCCAAGACTTTCTTCCTTTGGGGACCACGTGCCAA
GGCGGAGTTCACATTCGAGCAAATGGTGCAATTCGCCTCCAAGCTGCTCA
ATCAGCATCCCAAGGTCTTCGGCCATCACCTCTCCATGGCCCAAGAAGGA
GTAAACGCGGAGGCAAGCTTTCTAGACC
BO12263.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10059-PA | 699 | MAGE-RA | 1..696 | 17..712 | 3480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:17:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MAGE-RA | 943 | CG10059-RA | 112..812 | 12..712 | 3490 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:17:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7154369..7155069 | 712..12 | 3490 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-02 11:17:13 has no hits.
BO12263.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:53 Download gff for
BO12263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MAGE-PA | 1..699 | 17..713 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:35 Download gff for
BO12263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10059-PA | 1..699 | 17..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:18:04 Download gff for
BO12263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MAGE-RA | 104..812 | 2..712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:29:36 Download gff for
BO12263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MAGE-RA | 104..812 | 2..712 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:29:36 Download gff for
BO12263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7154369..7155076 | 2..712 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:18:04 Download gff for
BO12263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2980091..2980798 | 2..712 | 99 | | Minus |
BO12263.complete Sequence
730 bp assembled on 2006-10-11
GenBank Submission: FJ632385
> BO12263.complete
GAAGTTATCAGTCGACATGGCTAGCACTTCTCGCGCAGCTAGGAGCCAGA
ATGCCATCCCCTCGCAGGAAGCGCAACAACCCGTCGATGTGGTCGACGCC
AAGGTTCGCGCCATTCTAAACTACATCCTTGATCATACCGCCCAGAAGAT
TCCCATAAAGGACAAGGATTTGATAGCGGTGGCTGGGGACAAGAGCGAAC
TGAAGAAACGCCTGCCGCTGGTCACTAATCTGCTGGCCGAAACATTCGGT
ATAATACTAACCCCACTGGACGCGACCACCAAGACGTTCATCTGCACTGC
GGAGGAGCCGGTGGCCTCCATTCACGAGCTGACGCCGGCTCAACGGCCGC
AGTTCACGCTGCTGTATATTATTCTCATGTACATCTTCCTGCGCGGCAAC
CGCATCGAGGACTCGAAACTGTACGTTATGCTGGAGATGCTCAACATCTA
TCCAGACGAAGAACATGGCTACTTCGGCCCCAATCTGCGCAAACAGATCG
AGGAGACGTTTGTGAAGCAACAATATCTGAAGCGGGAACGCTCACAGCTA
AGTGCTTACGATGATTCCAAGACTTTCTTCCTTTGGGGACCACGTGCCAA
GGCGGAGTTCACATTCGAGCAAATGGTGCAATTCGCCTCCAAGCTGCTCA
ATCAGCATCCCAAGGTCTTCGGCCATCACCTCTCCATGGCCCAAGAAGGA
GTAAACGCGGAGGCAAGCTTTCTAGACCAT
BO12263.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:18:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MAGE-RA | 699 | CG10059-PA | 1..696 | 17..712 | 3480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:18:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MAGE-RA | 943 | CG10059-RA | 112..812 | 12..712 | 3490 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:18:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7154369..7155069 | 712..12 | 3490 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:18:29 has no hits.
BO12263.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:36 Download gff for
BO12263.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MAGE-RA | 1..699 | 17..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:04 Download gff for
BO12263.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MAGE-RA | 100..808 | 2..712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:16 Download gff for
BO12263.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MAGE-RA | 117..812 | 17..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:37 Download gff for
BO12263.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MAGE-RA | 100..808 | 2..712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:03 Download gff for
BO12263.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MAGE-RA | 117..812 | 17..714 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:03 Download gff for
BO12263.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7154367..7155064 | 17..714 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:16 Download gff for
BO12263.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2980089..2980786 | 17..714 | 99 | | Minus |
BO12263.pep Sequence
Translation from 16 to 730
> BO12263.pep
MASTSRAARSQNAIPSQEAQQPVDVVDAKVRAILNYILDHTAQKIPIKDK
DLIAVAGDKSELKKRLPLVTNLLAETFGIILTPLDATTKTFICTAEEPVA
SIHELTPAQRPQFTLLYIILMYIFLRGNRIEDSKLYVMLEMLNIYPDEEH
GYFGPNLRKQIEETFVKQQYLKRERSQLSAYDDSKTFFLWGPRAKAEFTF
EQMVQFASKLLNQHPKVFGHHLSMAQEGVNAEASFLDH
BO12263.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MAGE-PA | 232 | CG10059-PA | 1..232 | 1..232 | 1181 | 100 | Plus |
