Clone BO12264 Report

Search the DGRC for BO12264

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:122
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG4577-RA
Protein status:BO12264.pep: validated full length
Sequenced Size:1369

Clone Sequence Records

BO12264.3prime Sequence

856 bp (808 high quality bases) assembled on 2006-04-20

> BO12264.3prime
ATGGTCTAGAAAGCTTGCGAAGTACTTCTCGCCATTGTAGCCGGATCCGC
GCTCCGCCACCGGTTCGTTCATGAATTGGCTCTGGTTCACCGAGCGCTTC
TTCTTGGCCACCATGTAGCGCTGCTTCGAGGAGCCGAATCGGCTATTGAC
TCCGCTGTACTTGTGCTGACGCGGCACGTACTCGTACTTGGGCATCGCCT
GGTTCTGGTTGTCCAGCGGCACTCCGGCGCCGTAGTAGTCCGCCTGTACG
GGCACGTCGAACCAGCTGCCGGCGGGCGCGTAGTCCAGGTCATCGGAGGG
TATCATGGGCACCGGTCCGGAGCTCTCAGCATCGCTCTCCTTGCGCGCCC
GTTCTCCGGCCTCCACCAGGGCAACCAGGGCCAGCATGTCGGCGGGATTG
AGCTGGGTGTCGCGTTTAAGTCGCATGTCGTTGAATCGTCGATATTTGTT
GAGGTTGATACCCTCGTCGTTGTAGCCACTTCCACTGCCCAGGCTGCTCG
CCCCATTGCCGCCGGGAGTGCCCACGTTGTAGTAGATACCCCGCTTGTTG
CGCTCATCCACGTTGTAGTTCCGATTGGCATAGGTCAGCGGCACCGAGAG
GGGAATGCTCTCCAGATAGGCCTCGGCGTTCAGGAGATTCTGCAAATTGT
CGTAGGCCTTGTTTCGCGCACTCGAGCTACTCACTCTTCGCTCTGGCACG
TAGTCATCGATCTCCTGGAGATCCCGCTCGCCATAGCTGACAGGAACGGC
GGCCTCGTAGTCGTCGGACCAAACGCCACTGGGCACATCGCTGCCGTAGT
CGCTGGAGGCGACGGAGTACGGATTGTACTCGTAATTGAAGCCCCGCTTG
CGCATC

BO12264.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG4577-PA 1338 CG4577-RA 498..1335 856..19 4165 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4577-RA 2536 CG4577-RA 664..1501 856..19 4175 99.9 Minus
CG4577-RB 2707 CG4577-RB 664..1504 856..19 4135 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1139482..1139764 422..140 1415 100 Minus
2L 23513712 2L 1139122..1139385 685..422 1320 100 Minus
2L 23513712 2L 1138895..1139067 856..684 850 99.4 Minus
2L 23513712 2L 1139832..1139953 140..19 610 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:00:12 has no hits.

BO12264.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:54 Download gff for BO12264.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4577-PA 498..1338 15..856 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:36 Download gff for BO12264.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4577-PA 498..1338 15..856 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:27:51 Download gff for BO12264.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4577-RA 664..1505 14..856 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:21:27 Download gff for BO12264.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4577-RA 664..1505 14..856 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:21:27 Download gff for BO12264.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1139483..1139763 141..421 100 -> Minus
2L 1139832..1139957 14..140 98   Minus
2L 1138895..1139067 684..856 99 -> Minus
2L 1139124..1139385 422..683 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:27:51 Download gff for BO12264.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1138895..1139067 684..856 99 -> Minus
arm_2L 1139124..1139385 422..683 100 -> Minus
arm_2L 1139483..1139763 141..421 100 -> Minus
arm_2L 1139832..1139957 14..140 98   Minus

BO12264.5prime Sequence

841 bp (795 high quality bases) assembled on 2006-04-20

> BO12264.5prime
GAAGTTATCAGTCGACATGCCACGCATCTCGTTGCCCGGCAGCAGCCTGC
TGGTAGTCCTGGCACTGATCCTGTGCCTCAGCCTTCCAATCCGGGCGGTG
CCCACCTCCGTGCTCGCCCAAGACACGGAGCTCTCCACCAGCGCCAACCA
CAAGCTCCAGCAGCAGCAGCAACAGCAGCAGCAGCATCACCAGCAGCAGC
AGCTCCAGCAGCAGCAGCAGCAGCAACAGCCGGCCACAGCCAAACGCTCC
GAGGAGGCGAGTGCCGTGCCCACGGCGGACAAGAAGTCGAGTCCGGAAAT
TGTGCCCGCTTCCTTTAGCAACGCTCCGTCGGCCCGAAACAGCCCAGTTC
CGGTCTCCAGCCAGCAGCAGGAGCAGCAGCAGGTGCCGTCCGGAGTCTAC
GCCCTGCCCTCCAACGAGGAGATCCTGGCCGCCGTAGCGGCCGCCGCCCA
GAACAGCCAACAGCAGTTGCAGGAGGAGCCCTCCGCCCTGGAGGAGGCGG
TGGCCAGCTCCACGATGCGCAAGCGGGGCATCAATTACGAGTACAATCCG
TACTCCGTCGCCTCCAGCGACTACGGCAGCGATGTGCCCAGTGGCGTTTG
GTCCGACGACTACGAGGCCGCCGTTCCTGTCAGCTATGGCGAGCGGGATC
TCCAGGAGATCGATGACTACGTGCCAGAGCGAAGAGTGAGTAGCTCGAGT
GCGCGAAACAAGGCCTACGACAATTTGCAGAATCTCCTGAACGCCGAGGC
CTATCTGGAGAGCATTCCCCTCTCGGTGCCGCTGACCTATGCCAATCGGA
ACTACAACGTGAATGAGCGCAACAAGCGGGGTATCTACTAC

BO12264.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG4577-PA 1338 CG4577-RA 1..825 17..841 4100 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:27:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4577-RB 2707 CG4577-RB 165..991 15..841 4120 99.9 Plus
CG4577-RA 2536 CG4577-RA 165..991 15..841 4120 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1138618..1139067 237..686 2250 100 Plus
2L 23513712 2L 1134857..1135081 15..239 1125 100 Plus
2L 23513712 2L 1139122..1139278 685..841 770 99.4 Plus
Blast to na_te.dros performed on 2015-02-04 03:26:55 has no hits.

BO12264.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:55 Download gff for BO12264.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4577-PA 1..825 17..841 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:38 Download gff for BO12264.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4577-PA 1..825 17..841 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:53:41 Download gff for BO12264.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4577-RA 161..991 11..841 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:29:15 Download gff for BO12264.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4577-RA 161..991 11..841 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:29:15 Download gff for BO12264.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1139124..1139278 687..841 99   Plus
2L 1134853..1135081 11..239 99 -> Plus
2L 1138621..1139067 240..686 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:53:41 Download gff for BO12264.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1134853..1135081 11..239 99 -> Plus
arm_2L 1138621..1139067 240..686 100 -> Plus
arm_2L 1139124..1139278 687..841 99   Plus

BO12264.complete Sequence

1369 bp assembled on 2006-10-11

GenBank Submission: FJ632386

> BO12264.complete
GAAGTTATCAGTCGACATGCCACGCATCTCGTTGCCCGGCAGCAGCCTGC
TGGTAGTCCTGGCACTGATCCTGTGCCTCAGCCTTCCAATCCGGGCGGTG
CCCACCTCCGTGCTCGCCCAAGACACGGAGCTCTCCACCAGCGCCAACCA
CAAGCTCCAGCAGCAGCAGCAACAGCAGCAGCAGCATCACCAGCAGCAGC
AGCTCCAGCAGCAGCAGCAGCAGCAACAGCCGGCCACAGCCAAACGCTCC
GAGGAGGCGAGTGCCGTGCCCACGGCGGACAAGAAGTCGAGTCCGGAAAT
TGTGCCCGCTTCCTTTAGCAACGCTCCGTCGGCCCGAAACAGCCCAGTTC
CGGTCTCCAGCCAGCAGCAGGAGCAGCAGCAGGTGCCGTCCGGAGTCTAC
GCCCTGCCCTCCAACGAGGAGATCCTGGCCGCCGTAGCGGCCGCCGCCCA
GAACAGCCAACAGCAGTTGCAGGAGGAGCCCTCCGCCCTGGAGGAGGCGG
TGGCCAGCTCCACGATGCGCAAGCGGGGCATCAATTACGAGTACAATCCG
TACTCCGTCGCCTCCAGCGACTACGGCAGCGATGTGCCCAGTGGCGTTTG
GTCCGACGACTACGAGGCCGCCGTTCCTGTCAGCTATGGCGAGCGGGATC
TCCAGGAGATCGATGACTACGTGCCAGAGCGAAGAGTGAGTAGCTCGAGT
GCGCGAAACAAGGCCTACGACAATTTGCAGAATCTCCTGAACGCCGAGGC
CTATCTGGAGAGCATTCCCCTCTCGGTGCCGCTGACCTATGCCAATCGGA
ACTACAACGTGGATGAGCGCAACAAGCGGGGTATCTACTACAACGTGGGC
ACTCCCGGCGGCAATGGGGCGAGCAGCCTGGGCAGTGGAAGTGGCTACAA
CGACGAGGGTATCAACCTCAACAAATATCGACGATTCAACGACATGCGAC
TTAAACGCGACACCCAGCTCAATCCCGCCGACATGCTGGCCCTGGTTGCC
CTGGTGGAGGCCGGAGAACGGGCGCGCAAGGAGAGCGATGCTGAGAGCTC
CGGACCGGTGCCCATGATACCCTCCGATGACCTGGACTACGCGCCCGCCG
GCAGCTGGTTCGACGTGCCCGTACAGGCGGACTACTACGGCGCCGGAGTG
CCGCTGGACAACCAGAACCAGGCGATGCCCAAGTACGAGTACGTGCCGCG
TCAGCACAAGTACAGCGGAGTCAATAGCCGATTCGGCTCCTCGAAGCAGC
GCTACATGGTGGCCAAGAAGAAGCGCTCGGTGAACCAGAGCCAATTCATG
AACGAACCGGTGGCGGAGCGCGGATCCGGCTACAATGGCGAGAAGTACTT
CGCAAGCTTTCTAGACCAT

BO12264.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG4577-RA 1338 CG4577-PA 1..1335 17..1351 6675 100 Plus
CG4577-RB 1341 CG4577-PB 1..1338 17..1351 6610 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG4577-RA 2536 CG4577-RA 165..1501 15..1351 6685 100 Plus
CG4577-RB 2707 CG4577-RB 165..1504 15..1351 6620 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1138618..1139067 237..686 2250 100 Plus
2L 23513712 2L 1139482..1139764 948..1230 1415 100 Plus
2L 23513712 2L 1139122..1139385 685..948 1320 100 Plus
2L 23513712 2L 1134857..1135081 15..239 1125 100 Plus
2L 23513712 2L 1139832..1139953 1230..1351 610 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:37:30 has no hits.

BO12264.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:37 Download gff for BO12264.complete
Subject Subject Range Query Range Percent Splice Strand
CG4577-RA 1..1338 17..1355 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:06 Download gff for BO12264.complete
Subject Subject Range Query Range Percent Splice Strand
CG4577-RA 152..1496 11..1356 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:33:45 Download gff for BO12264.complete
Subject Subject Range Query Range Percent Splice Strand
CG4577-RA 167..1501 17..1353 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:38 Download gff for BO12264.complete
Subject Subject Range Query Range Percent Splice Strand
CG4577-RA 152..1496 11..1356 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:49 Download gff for BO12264.complete
Subject Subject Range Query Range Percent Splice Strand
CG4577-RA 167..1501 17..1353 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:49 Download gff for BO12264.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1139124..1139385 687..948 100 -> Plus
2L 1139483..1139763 949..1229 100 -> Plus
2L 1139832..1139953 1230..1353 98   Plus
2L 1134859..1135081 17..239 100 -> Plus
2L 1138621..1139067 240..686 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:33:45 Download gff for BO12264.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1134859..1135081 17..239 100 -> Plus
arm_2L 1138621..1139067 240..686 100 -> Plus
arm_2L 1139124..1139385 687..948 100 -> Plus
arm_2L 1139483..1139763 949..1229 100 -> Plus
arm_2L 1139832..1139953 1230..1353 98   Plus

BO12264.pep Sequence

Translation from 16 to 1369

> BO12264.pep
MPRISLPGSSLLVVLALILCLSLPIRAVPTSVLAQDTELSTSANHKLQQQ
QQQQQQHHQQQQLQQQQQQQQPATAKRSEEASAVPTADKKSSPEIVPASF
SNAPSARNSPVPVSSQQQEQQQVPSGVYALPSNEEILAAVAAAAQNSQQQ
LQEEPSALEEAVASSTMRKRGINYEYNPYSVASSDYGSDVPSGVWSDDYE
AAVPVSYGERDLQEIDDYVPERRVSSSSARNKAYDNLQNLLNAEAYLESI
PLSVPLTYANRNYNVDERNKRGIYYNVGTPGGNGASSLGSGSGYNDEGIN
LNKYRRFNDMRLKRDTQLNPADMLALVALVEAGERARKESDAESSGPVPM
IPSDDLDYAPAGSWFDVPVQADYYGAGVPLDNQNQAMPKYEYVPRQHKYS
GVNSRFGSSKQRYMVAKKKRSVNQSQFMNEPVAERGSGYNGEKYFASFLD
H

BO12264.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4577-PA 445 CG4577-PA 1..445 1..445 2274 100 Plus
CG4577-PB 446 CG4577-PB 1..446 1..445 2255 99.6 Plus