Clone Sequence Records
BO12264.3prime Sequence
856 bp (808 high quality bases) assembled on 2006-04-20
> BO12264.3prime
ATGGTCTAGAAAGCTTGCGAAGTACTTCTCGCCATTGTAGCCGGATCCGC
GCTCCGCCACCGGTTCGTTCATGAATTGGCTCTGGTTCACCGAGCGCTTC
TTCTTGGCCACCATGTAGCGCTGCTTCGAGGAGCCGAATCGGCTATTGAC
TCCGCTGTACTTGTGCTGACGCGGCACGTACTCGTACTTGGGCATCGCCT
GGTTCTGGTTGTCCAGCGGCACTCCGGCGCCGTAGTAGTCCGCCTGTACG
GGCACGTCGAACCAGCTGCCGGCGGGCGCGTAGTCCAGGTCATCGGAGGG
TATCATGGGCACCGGTCCGGAGCTCTCAGCATCGCTCTCCTTGCGCGCCC
GTTCTCCGGCCTCCACCAGGGCAACCAGGGCCAGCATGTCGGCGGGATTG
AGCTGGGTGTCGCGTTTAAGTCGCATGTCGTTGAATCGTCGATATTTGTT
GAGGTTGATACCCTCGTCGTTGTAGCCACTTCCACTGCCCAGGCTGCTCG
CCCCATTGCCGCCGGGAGTGCCCACGTTGTAGTAGATACCCCGCTTGTTG
CGCTCATCCACGTTGTAGTTCCGATTGGCATAGGTCAGCGGCACCGAGAG
GGGAATGCTCTCCAGATAGGCCTCGGCGTTCAGGAGATTCTGCAAATTGT
CGTAGGCCTTGTTTCGCGCACTCGAGCTACTCACTCTTCGCTCTGGCACG
TAGTCATCGATCTCCTGGAGATCCCGCTCGCCATAGCTGACAGGAACGGC
GGCCTCGTAGTCGTCGGACCAAACGCCACTGGGCACATCGCTGCCGTAGT
CGCTGGAGGCGACGGAGTACGGATTGTACTCGTAATTGAAGCCCCGCTTG
CGCATC
BO12264.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4577-PA | 1338 | CG4577-RA | 498..1335 | 856..19 | 4165 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:00:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4577-RA | 2536 | CG4577-RA | 664..1501 | 856..19 | 4175 | 99.9 | Minus |
CG4577-RB | 2707 | CG4577-RB | 664..1504 | 856..19 | 4135 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:00:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1139482..1139764 | 422..140 | 1415 | 100 | Minus |
2L | 23513712 | 2L | 1139122..1139385 | 685..422 | 1320 | 100 | Minus |
2L | 23513712 | 2L | 1138895..1139067 | 856..684 | 850 | 99.4 | Minus |
2L | 23513712 | 2L | 1139832..1139953 | 140..19 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:00:12 has no hits.
BO12264.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:54 Download gff for
BO12264.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4577-PA | 498..1338 | 15..856 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:36 Download gff for
BO12264.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4577-PA | 498..1338 | 15..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:27:51 Download gff for
BO12264.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4577-RA | 664..1505 | 14..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:21:27 Download gff for
BO12264.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4577-RA | 664..1505 | 14..856 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:21:27 Download gff for
BO12264.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1139483..1139763 | 141..421 | 100 | -> | Minus |
2L | 1139832..1139957 | 14..140 | 98 | | Minus |
2L | 1138895..1139067 | 684..856 | 99 | -> | Minus |
2L | 1139124..1139385 | 422..683 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:27:51 Download gff for
BO12264.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1138895..1139067 | 684..856 | 99 | -> | Minus |
arm_2L | 1139124..1139385 | 422..683 | 100 | -> | Minus |
arm_2L | 1139483..1139763 | 141..421 | 100 | -> | Minus |
arm_2L | 1139832..1139957 | 14..140 | 98 | | Minus |
BO12264.5prime Sequence
841 bp (795 high quality bases) assembled on 2006-04-20
> BO12264.5prime
GAAGTTATCAGTCGACATGCCACGCATCTCGTTGCCCGGCAGCAGCCTGC
TGGTAGTCCTGGCACTGATCCTGTGCCTCAGCCTTCCAATCCGGGCGGTG
CCCACCTCCGTGCTCGCCCAAGACACGGAGCTCTCCACCAGCGCCAACCA
CAAGCTCCAGCAGCAGCAGCAACAGCAGCAGCAGCATCACCAGCAGCAGC
AGCTCCAGCAGCAGCAGCAGCAGCAACAGCCGGCCACAGCCAAACGCTCC
GAGGAGGCGAGTGCCGTGCCCACGGCGGACAAGAAGTCGAGTCCGGAAAT
TGTGCCCGCTTCCTTTAGCAACGCTCCGTCGGCCCGAAACAGCCCAGTTC
CGGTCTCCAGCCAGCAGCAGGAGCAGCAGCAGGTGCCGTCCGGAGTCTAC
GCCCTGCCCTCCAACGAGGAGATCCTGGCCGCCGTAGCGGCCGCCGCCCA
GAACAGCCAACAGCAGTTGCAGGAGGAGCCCTCCGCCCTGGAGGAGGCGG
TGGCCAGCTCCACGATGCGCAAGCGGGGCATCAATTACGAGTACAATCCG
TACTCCGTCGCCTCCAGCGACTACGGCAGCGATGTGCCCAGTGGCGTTTG
GTCCGACGACTACGAGGCCGCCGTTCCTGTCAGCTATGGCGAGCGGGATC
TCCAGGAGATCGATGACTACGTGCCAGAGCGAAGAGTGAGTAGCTCGAGT
GCGCGAAACAAGGCCTACGACAATTTGCAGAATCTCCTGAACGCCGAGGC
CTATCTGGAGAGCATTCCCCTCTCGGTGCCGCTGACCTATGCCAATCGGA
ACTACAACGTGAATGAGCGCAACAAGCGGGGTATCTACTAC
BO12264.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4577-PA | 1338 | CG4577-RA | 1..825 | 17..841 | 4100 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:27:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4577-RB | 2707 | CG4577-RB | 165..991 | 15..841 | 4120 | 99.9 | Plus |
CG4577-RA | 2536 | CG4577-RA | 165..991 | 15..841 | 4120 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:26:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1138618..1139067 | 237..686 | 2250 | 100 | Plus |
2L | 23513712 | 2L | 1134857..1135081 | 15..239 | 1125 | 100 | Plus |
2L | 23513712 | 2L | 1139122..1139278 | 685..841 | 770 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:26:55 has no hits.
BO12264.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:55 Download gff for
BO12264.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4577-PA | 1..825 | 17..841 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:38 Download gff for
BO12264.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4577-PA | 1..825 | 17..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:53:41 Download gff for
BO12264.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4577-RA | 161..991 | 11..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:29:15 Download gff for
BO12264.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4577-RA | 161..991 | 11..841 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:29:15 Download gff for
BO12264.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1139124..1139278 | 687..841 | 99 | | Plus |
2L | 1134853..1135081 | 11..239 | 99 | -> | Plus |
2L | 1138621..1139067 | 240..686 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:53:41 Download gff for
BO12264.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1134853..1135081 | 11..239 | 99 | -> | Plus |
arm_2L | 1138621..1139067 | 240..686 | 100 | -> | Plus |
arm_2L | 1139124..1139278 | 687..841 | 99 | | Plus |
BO12264.complete Sequence
1369 bp assembled on 2006-10-11
GenBank Submission: FJ632386
> BO12264.complete
GAAGTTATCAGTCGACATGCCACGCATCTCGTTGCCCGGCAGCAGCCTGC
TGGTAGTCCTGGCACTGATCCTGTGCCTCAGCCTTCCAATCCGGGCGGTG
CCCACCTCCGTGCTCGCCCAAGACACGGAGCTCTCCACCAGCGCCAACCA
CAAGCTCCAGCAGCAGCAGCAACAGCAGCAGCAGCATCACCAGCAGCAGC
AGCTCCAGCAGCAGCAGCAGCAGCAACAGCCGGCCACAGCCAAACGCTCC
GAGGAGGCGAGTGCCGTGCCCACGGCGGACAAGAAGTCGAGTCCGGAAAT
TGTGCCCGCTTCCTTTAGCAACGCTCCGTCGGCCCGAAACAGCCCAGTTC
CGGTCTCCAGCCAGCAGCAGGAGCAGCAGCAGGTGCCGTCCGGAGTCTAC
GCCCTGCCCTCCAACGAGGAGATCCTGGCCGCCGTAGCGGCCGCCGCCCA
GAACAGCCAACAGCAGTTGCAGGAGGAGCCCTCCGCCCTGGAGGAGGCGG
TGGCCAGCTCCACGATGCGCAAGCGGGGCATCAATTACGAGTACAATCCG
TACTCCGTCGCCTCCAGCGACTACGGCAGCGATGTGCCCAGTGGCGTTTG
GTCCGACGACTACGAGGCCGCCGTTCCTGTCAGCTATGGCGAGCGGGATC
TCCAGGAGATCGATGACTACGTGCCAGAGCGAAGAGTGAGTAGCTCGAGT
GCGCGAAACAAGGCCTACGACAATTTGCAGAATCTCCTGAACGCCGAGGC
CTATCTGGAGAGCATTCCCCTCTCGGTGCCGCTGACCTATGCCAATCGGA
ACTACAACGTGGATGAGCGCAACAAGCGGGGTATCTACTACAACGTGGGC
ACTCCCGGCGGCAATGGGGCGAGCAGCCTGGGCAGTGGAAGTGGCTACAA
CGACGAGGGTATCAACCTCAACAAATATCGACGATTCAACGACATGCGAC
TTAAACGCGACACCCAGCTCAATCCCGCCGACATGCTGGCCCTGGTTGCC
CTGGTGGAGGCCGGAGAACGGGCGCGCAAGGAGAGCGATGCTGAGAGCTC
CGGACCGGTGCCCATGATACCCTCCGATGACCTGGACTACGCGCCCGCCG
GCAGCTGGTTCGACGTGCCCGTACAGGCGGACTACTACGGCGCCGGAGTG
CCGCTGGACAACCAGAACCAGGCGATGCCCAAGTACGAGTACGTGCCGCG
TCAGCACAAGTACAGCGGAGTCAATAGCCGATTCGGCTCCTCGAAGCAGC
GCTACATGGTGGCCAAGAAGAAGCGCTCGGTGAACCAGAGCCAATTCATG
AACGAACCGGTGGCGGAGCGCGGATCCGGCTACAATGGCGAGAAGTACTT
CGCAAGCTTTCTAGACCAT
BO12264.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:37:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4577-RA | 1338 | CG4577-PA | 1..1335 | 17..1351 | 6675 | 100 | Plus |
CG4577-RB | 1341 | CG4577-PB | 1..1338 | 17..1351 | 6610 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:37:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4577-RA | 2536 | CG4577-RA | 165..1501 | 15..1351 | 6685 | 100 | Plus |
CG4577-RB | 2707 | CG4577-RB | 165..1504 | 15..1351 | 6620 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:37:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1138618..1139067 | 237..686 | 2250 | 100 | Plus |
2L | 23513712 | 2L | 1139482..1139764 | 948..1230 | 1415 | 100 | Plus |
2L | 23513712 | 2L | 1139122..1139385 | 685..948 | 1320 | 100 | Plus |
2L | 23513712 | 2L | 1134857..1135081 | 15..239 | 1125 | 100 | Plus |
2L | 23513712 | 2L | 1139832..1139953 | 1230..1351 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:37:30 has no hits.
BO12264.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:37 Download gff for
BO12264.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4577-RA | 1..1338 | 17..1355 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:06 Download gff for
BO12264.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4577-RA | 152..1496 | 11..1356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:33:45 Download gff for
BO12264.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4577-RA | 167..1501 | 17..1353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:38 Download gff for
BO12264.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4577-RA | 152..1496 | 11..1356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:49 Download gff for
BO12264.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4577-RA | 167..1501 | 17..1353 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:49 Download gff for
BO12264.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1139124..1139385 | 687..948 | 100 | -> | Plus |
2L | 1139483..1139763 | 949..1229 | 100 | -> | Plus |
2L | 1139832..1139953 | 1230..1353 | 98 | | Plus |
2L | 1134859..1135081 | 17..239 | 100 | -> | Plus |
2L | 1138621..1139067 | 240..686 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:33:45 Download gff for
BO12264.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1134859..1135081 | 17..239 | 100 | -> | Plus |
arm_2L | 1138621..1139067 | 240..686 | 100 | -> | Plus |
arm_2L | 1139124..1139385 | 687..948 | 100 | -> | Plus |
arm_2L | 1139483..1139763 | 949..1229 | 100 | -> | Plus |
arm_2L | 1139832..1139953 | 1230..1353 | 98 | | Plus |
BO12264.pep Sequence
Translation from 16 to 1369
> BO12264.pep
MPRISLPGSSLLVVLALILCLSLPIRAVPTSVLAQDTELSTSANHKLQQQ
QQQQQQHHQQQQLQQQQQQQQPATAKRSEEASAVPTADKKSSPEIVPASF
SNAPSARNSPVPVSSQQQEQQQVPSGVYALPSNEEILAAVAAAAQNSQQQ
LQEEPSALEEAVASSTMRKRGINYEYNPYSVASSDYGSDVPSGVWSDDYE
AAVPVSYGERDLQEIDDYVPERRVSSSSARNKAYDNLQNLLNAEAYLESI
PLSVPLTYANRNYNVDERNKRGIYYNVGTPGGNGASSLGSGSGYNDEGIN
LNKYRRFNDMRLKRDTQLNPADMLALVALVEAGERARKESDAESSGPVPM
IPSDDLDYAPAGSWFDVPVQADYYGAGVPLDNQNQAMPKYEYVPRQHKYS
GVNSRFGSSKQRYMVAKKKRSVNQSQFMNEPVAERGSGYNGEKYFASFLD
H
BO12264.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4577-PA | 445 | CG4577-PA | 1..445 | 1..445 | 2274 | 100 | Plus |
CG4577-PB | 446 | CG4577-PB | 1..446 | 1..445 | 2255 | 99.6 | Plus |