Clone BO12265 Report

Search the DGRC for BO12265

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:122
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptCG42673-RC
Protein status:BO12265.pep:
Sequenced Size:2746

Clone Sequence Records

BO12265.3prime Sequence

652 bp (650 high quality bases) assembled on 2006-04-20

> BO12265.3prime
ATGGTCTAGAAAGCTTGCTTTGGTGGTGTGCCTGGCCCAGGTGGTCCTCT
GCACCTGGCTCATCATCTGGCTGCGATTGGGCACCTTCTCGCTGGTGCTG
CGTGTGATGAAACTGGGCGTGGCCGATAGCTTTCTTTGGTGACCCGCCTC
ATCGGTGACCCTCAGCAAAACCGTATTGAATCGCGTTTCCCGACTGCTGC
TACTATTGCTATTGCTATTATTGTTGTGGTTCTGGTTGCCATTGCTGCTT
CCAGGACTAATGTTGTTATTGCTGCTCCTCAAACGTGGCGAGGATGGGGA
GTCCAGGGTGGAGGAGCTACGACTGGTATCCCGCGTGCTGGTCGATCCTC
CACAGGCCAGTCCAGCCAGATTGCCATTGGACACCGCCGCCTTGAGTTGC
TCCTCCAGATTATTCAGATTCTGCTCGATGCTCAGGCGTATATCCTCGTT
CAAGGACGAACTCCCGGCAAAGGAATTCCGATTCATGGTGCCCAACGGTG
AGGGGGTCAGTGTTCCCGTGGCTGCCGGTGAGGTTAGGAAATTGAAACCT
CCGGCTCCGCCAGCATTGTTGTTTGGCGTGGCCGGTGTGCAGGACAAGGG
ATTCACATAGAAGAAGGAGTTGTGCGCCGTGGCCGAGGGCGTTGGTGGTC
TG

BO12265.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG32048-PA 2097 CG32048-RA 1468..2094 645..19 3135 100 Minus
CG32048-PB 2715 CG32048-RB 2086..2712 645..19 3135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:21:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG42673-RC 3902 CG32048-RB 2543..3169 645..19 3135 100 Minus
CG42673-RB 3618 CG32048-RA 2259..2885 645..19 3135 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:21:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9593150..9593776 645..19 3135 100 Minus
Blast to na_te.dros performed 2015-02-08 13:21:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 636..723 188..275 125 64.8 Plus

BO12265.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:56 Download gff for BO12265.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32048-PA 1459..2097 18..652 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:39 Download gff for BO12265.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32048-PB 2077..2715 18..652 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:45:18 Download gff for BO12265.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42673-RB 2250..2885 19..652 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:27:44 Download gff for BO12265.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42673-RB 2250..2885 19..652 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:27:44 Download gff for BO12265.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9593141..9593776 19..652 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:45:18 Download gff for BO12265.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9586241..9586876 19..652 99   Minus

BO12265.5prime Sequence

873 bp (836 high quality bases) assembled on 2006-04-20

> BO12265.5prime
GAAGTTATCAGTCGACATGAAGCACGAGAAGACCCTAGCCATGGCTGCTC
CGCACAAGCAGCGCCATGCGGACAGCTCCGCCCACGTAGTTCCACGTAGT
CCCATAACCAAGGCCTTTGATTTCCTGCCCTGGACGCGAAGTCGCAGCAA
GGTCAACATGACCAAGGTTCAAAGTCAGCCGGCGGAACAGCAGGCCTCTG
TTTCCACGGTTACCCCTGCAGAGAAATCCTCGGAGGTGCACTATCACAAG
AACATTTTCCGCAGTGGCGGTGGTCTCATCCGTGATATCCTGGTGGGAGA
TAAAAATCTGCAGCTTAAGGATAAGCCACCACAGTCTCCCGTTCCTTCGC
ACAAAAAGAAACAGAAGCACCTGTCGCGCAACAAAAGCTTGGATATTCGA
GAACTTATTGGCTGTGTGGAGCGGGAGATGGCTCCTGCGACGGGAGGAGG
TCCTGTGAGTCAACCGCCACGTTTCATAGATGACACCTACATAGACCACA
AGCCCAAGCACATACTCTTCAATGACGATGAGAATACGGTGTACATTATA
AAGAAGGAGCAGCCCGTGGCCAAGTCCAGTCACAAGGCCAGCAATTCCAC
ATCCAATGCTGCCCAATCGAATGGAGATGTTCTGAAGGCGCGGTTGAAGT
TTAAGAGATTACCCGGCGATCACTATGAAGCATCGCCGGAGGCGCTCCGA
CGGGCACATCTTCTCCACCAGCGATCCGAGCAGCGTCATCAGCTGCAGCG
GCGCAAGAGTCTCAGCGATCAGCAGAGCAGCTCCAGCCTGAGCAGTGGCG
GCGGTGGAGGTGGCAATGCTAATGGCAGCATTATGTTGGAACGCCCAAAA
CCGATAAGCCGCGCAAGAAGCTT

BO12265.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG32048-PB 2715 CG32048-RB 1..830 17..846 4125 99.8 Plus
CG32048-PB 2715 CG32048-RB 829..858 844..873 150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:03:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG42673-RC 3902 CG32048-RB 457..1315 16..873 4255 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:03:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9586990..9587848 16..873 4230 99.8 Plus
Blast to na_te.dros performed on 2015-02-11 13:03:55 has no hits.

BO12265.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:57 Download gff for BO12265.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32048-PB 1..858 17..873 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:41 Download gff for BO12265.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32048-PB 1..858 17..873 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:17:23 Download gff for BO12265.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42673-RC 452..1315 11..873 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:29:42 Download gff for BO12265.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42673-RC 452..1315 11..873 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:29:42 Download gff for BO12265.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9586985..9587848 11..873 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:17:23 Download gff for BO12265.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9580085..9580948 11..873 99   Plus

BO12265.complete Sequence

2746 bp assembled on 2008-01-17

GenBank Submission: FJ632387

> BO12265.complete
GAAGTTATCAGTCGACATGAAGCACGAGAAGACCCTAGCCATGGCTGCTC
CGCACAAGCAGCGCCATGCGGACAGCTCCGCCCACGTAGTTCCACGTAGT
CCCATAACCAAGGCCTTTGATTTCCTGCCCTGGACGCGAAGTCGCAGCAA
GGTCAACATGACCAAGGTTCAAAGTCAGCCGGCGGAACAGCAGGCCTCTG
TTTCCACGGTTACCCCTGCAGAGAAATCCTCGGAGGTGCACTATCACAAG
AACATTTTCCGCAGTGGCGGTGGTCTCATCCGTGATATCCTGGTGGGAGA
TAAAAATCTGCAGCTTAAGGATAAGCCACCACAGTCTCCCGTTCCTTCGC
ACAAAAAGAAACAGAAGCACCTGTCGCGCAACAAAAGCTTGGATATTCGA
GAACTTATTGGCTGTGTGGAGCGGGAGATGGCTCCTGCGACGGGAGGAGG
TCCTGTGAGTCAACCGCCACGTTTCATAGATGACACCTACATAGACCACA
AGCCCAAGCACATACTCTTCAATGACGATGAGAATACGGTGTACATTATA
AAGAAGGAGCAGCCCGTGGCCAAGTCCAGTCACAAGGCCAGCAATTCCAC
ATCCAATGCTGCCCAATCGAATGGAGATGTTCTGAAGGCGCGGTTGAAGT
TTAAGAGATTACCCGGCGATCACTATGAAGCATCGCCGGAGGCGCTCCGA
CGGGCACATCTTCTCCACCAGCGATCCGAGCAGCGTCATCAGCTGCAGCG
GCGCAAGAGTCTCAGCGATCAGCAGAGCAGCTCCAGCCTGAGCAGTGGCG
GCGGTGGAGGTGGCAATGCTAATGGCAGCATTATGTTGGAACGCCCCAAA
ACCGATAAGCCGCGCAAGAAGCTTTCGTTCCGGGAACCCATTATTGCCGG
CGACCAAATACTACCACTCATACTCAGCGAACAGCGGCAGGCGAGACAGA
GGCGTCGCAGCTCACCCTTGGAGCGAAGCAGGGTTGGCTTAGCGATAGCG
GACTGTGATAATTTATGCAATAATCGCACAAAGGATGCAATTTCCTGCGG
CTGTGCGACAAGCGATCCGGAGTCTCAGGCGATGCGCATCGTTCGCACCG
TGGGACAAGCCTTTGAAGTGTGCCACAAATTTAATCTTCATAAGAATTCC
CTGGAACCCAATGACGAACGCTCCGATATATCCTCATCGGAGCTGCTGGA
CGTGGAGCAGATCAGCGAGCAGCAGCTATCCGAGGATGGTGAACGCGGTG
GCGGCGACAACGAGACGCCCAAGAAAGAGCACTTGGCCATAACGCCCGAT
CTGAACCACACGCAGCCGCAGCGGCCGAACCACTTGGATATAATGCCATC
GCATTCGAGTCTACGCAAATCGAACAGCCTGCTGTGCGATGTGGACGACA
AGTCGCCAGGCTCACCTTCCTCGCCGCGCTCTGAGATCACTCAGCTGAAG
GACCAGCTGGAGGCACAGGCTCTGCAGACGCGCCAGGCTCTGGGTCAACT
GATGCTGGTGCGGGAGCAGCTCATCTCGGAGACCAATGCGCGCATCGAGG
CACAGGCGCGCACCCAACAATTGCTGCAGCAGAACCGCGAGCTCCTGGAG
CACCTGGCCTCTTTGGGGGCCTACAATGAGCAGCAGACAGCCGGACTCAC
GTCGGCCAACATCGGAATGGCGCCACAGCAATCGCAGCTACAAATGCTGC
TGCAGGCCACGAGCAACAACAACAATCTGGCCACGATCAACCAACAGATC
AGCAATCTTGGCAGCATCAATCAGCAGTTGACCTCGCTGAGTCACCAGCT
GAGTGGCCTGAATCAGCAGAGCCAGCACCTCCAGAATCTGCAGCAGCAGC
AGCAACAACAGCAGCAGCAGCAGCAGCAACAAACGCAGGCGGCACCGACT
GCGGCCACGCCCCCTCCCGCTGCGGGGGGCAGTAGTCCGTATCCGTCGAT
GAGTGCGCTGCAGAGCATCAGCAATCAGCTGCAGCAGCAGCAGCAACAAC
AGCAGCAGGACGCATTGTCCAAGGATCTGTTCCAGGTGAATCAGGAGCTG
TTGAATCGCCTGCAGGCACTGAACTTGAATGCCAATCCTGGCCAGAGCCA
GCCAACGCCCTCGGCCACGGCGCACAACTCCTTCTTCTATGTGAATCCCT
TGTCCTGCACACCGGCCACGCCAAACAACAATGCTGGCGGAGCCGGAGGT
TTCAATTTCCTAACCTCACCGGCAGCCACGGGAACACTGACCCCCTCACC
GTTGGGCACCATGAATCGGAATTCCTTTGCCGGGAGTTCGTCCTTGAACG
AGGATATACGCCTGAGCATCGAGCAGAATCTGAATAATCTGGAGGAGCAA
CTCAAGGCGGCGGTGTCCAATGGCAATCTGGCTGGACTGGCCTGTGGAGG
ATCGACCAGCACGCGGGATACCAGTCGTAGCTCCTCCACCCTGGACTCCC
CATCCTCGCCACGTTTGAGGAGCAGCAATAACAACATTAGTCCTGGAAGC
AGCAATGGCAACCAGAACCACAACAATAATAGCAATAGCAATAGTAGCAG
CAGTCGGGAAACGCGATTCAATACGGTTTTGCTGAGGGTCACCGATGAGG
CGGGTCACCAAAGAAAGCTATCGGCCACGCCCAGTTTCATCACACGCAGC
ACCAGCGAGAAGGTGCCCAATCGCAGCCAGATGATGAGCCAGGTGCAGAG
GACCACCTGGGCCAGGCACACCACCAAAGCAAGCTTTCTAGACCAT

BO12265.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG42673-RC 2715 CG42673-PC 1..2712 17..2728 13545 100 Plus
CG42673-RB 2097 CG42673-PB 437..2094 1071..2728 8290 100 Plus
CG42673-RD 1317 CG42673-PD 437..1049 1071..1683 3050 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG42673-RC 3902 CG32048-RB 457..3169 16..2728 13550 100 Plus
CG42673-RB 3618 CG32048-RA 1228..2885 1071..2728 8290 100 Plus
CG42673-RD 3582 CG42673-RD 1228..1840 1071..1683 3050 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:32:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9586990..9588046 16..1072 5270 99.9 Plus
3L 28110227 3L 9592725..9593776 1677..2728 5260 100 Plus
3L 28110227 3L 9588238..9588444 1071..1277 1035 100 Plus
3L 28110227 3L 9592085..9592257 1384..1556 865 100 Plus
3L 28110227 3L 9592332..9592456 1554..1678 625 100 Plus
3L 28110227 3L 9591239..9591347 1276..1384 545 100 Plus
Blast to na_te.dros performed 2014-11-27 20:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 636..723 2559..2472 125 64.8 Minus

BO12265.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:13 Download gff for BO12265.complete
Subject Subject Range Query Range Percent Splice Strand
CG32048-RB 1..2715 17..2729 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:23 Download gff for BO12265.complete
Subject Subject Range Query Range Percent Splice Strand
CG32048-RB 458..3169 17..2730 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:15 Download gff for BO12265.complete
Subject Subject Range Query Range Percent Splice Strand
CG42673-RC 458..3169 17..2730 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:13 Download gff for BO12265.complete
Subject Subject Range Query Range Percent Splice Strand
CG32048-RB 452..3169 11..2728 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:22 Download gff for BO12265.complete
Subject Subject Range Query Range Percent Splice Strand
CG42673-RC 458..3169 17..2730 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:22 Download gff for BO12265.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9592086..9592256 1385..1555 100 -> Plus
3L 9592334..9592456 1556..1678 100 -> Plus
3L 9586991..9588046 17..1072 99 -> Plus
3L 9588240..9588444 1073..1277 100 -> Plus
3L 9591241..9591347 1278..1384 100 -> Plus
3L 9592727..9593776 1679..2730 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:15 Download gff for BO12265.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9580091..9581146 17..1072 99 -> Plus
arm_3L 9581340..9581544 1073..1277 100 -> Plus
arm_3L 9584341..9584447 1278..1384 100 -> Plus
arm_3L 9585186..9585356 1385..1555 100 -> Plus
arm_3L 9585434..9585556 1556..1678 100 -> Plus
arm_3L 9585827..9586876 1679..2730 99   Plus

BO12265.pep Sequence

Translation from 16 to 2746

> BO12265.pep
MKHEKTLAMAAPHKQRHADSSAHVVPRSPITKAFDFLPWTRSRSKVNMTK
VQSQPAEQQASVSTVTPAEKSSEVHYHKNIFRSGGGLIRDILVGDKNLQL
KDKPPQSPVPSHKKKQKHLSRNKSLDIRELIGCVEREMAPATGGGPVSQP
PRFIDDTYIDHKPKHILFNDDENTVYIIKKEQPVAKSSHKASNSTSNAAQ
SNGDVLKARLKFKRLPGDHYEASPEALRRAHLLHQRSEQRHQLQRRKSLS
DQQSSSSLSSGGGGGGNANGSIMLERPKTDKPRKKLSFREPIIAGDQILP
LILSEQRQARQRRRSSPLERSRVGLAIADCDNLCNNRTKDAISCGCATSD
PESQAMRIVRTVGQAFEVCHKFNLHKNSLEPNDERSDISSSELLDVEQIS
EQQLSEDGERGGGDNETPKKEHLAITPDLNHTQPQRPNHLDIMPSHSSLR
KSNSLLCDVDDKSPGSPSSPRSEITQLKDQLEAQALQTRQALGQLMLVRE
QLISETNARIEAQARTQQLLQQNRELLEHLASLGAYNEQQTAGLTSANIG
MAPQQSQLQMLLQATSNNNNLATINQQISNLGSINQQLTSLSHQLSGLNQ
QSQHLQNLQQQQQQQQQQQQQQTQAAPTAATPPPAAGGSSPYPSMSALQS
ISNQLQQQQQQQQQDALSKDLFQVNQELLNRLQALNLNANPGQSQPTPSA
TAHNSFFYVNPLSCTPATPNNNAGGAGGFNFLTSPAATGTLTPSPLGTMN
RNSFAGSSSLNEDIRLSIEQNLNNLEEQLKAAVSNGNLAGLACGGSTSTR
DTSRSSSTLDSPSSPRLRSSNNNISPGSSNGNQNHNNNSNSNSSSSRETR
FNTVLLRVTDEAGHQRKLSATPSFITRSTSEKVPNRSQMMSQVQRTTWAR
HTTKASFLDH

BO12265.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:25:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG42673-PC 904 CG32048-PB 1..904 1..904 4612 100 Plus
CG42673-PB 698 CG32048-PA 127..698 333..904 2806 97 Plus
CG42673-PD 438 CG42673-PD 127..350 333..556 1038 92 Plus
Pdp1-PC 570 CG17888-PC 17..306 586..852 188 29.6 Plus
Pdp1-PL 581 CG17888-PL 17..306 586..852 188 29.6 Plus