Clone Sequence Records
BO12265.3prime Sequence
652 bp (650 high quality bases) assembled on 2006-04-20
> BO12265.3prime
ATGGTCTAGAAAGCTTGCTTTGGTGGTGTGCCTGGCCCAGGTGGTCCTCT
GCACCTGGCTCATCATCTGGCTGCGATTGGGCACCTTCTCGCTGGTGCTG
CGTGTGATGAAACTGGGCGTGGCCGATAGCTTTCTTTGGTGACCCGCCTC
ATCGGTGACCCTCAGCAAAACCGTATTGAATCGCGTTTCCCGACTGCTGC
TACTATTGCTATTGCTATTATTGTTGTGGTTCTGGTTGCCATTGCTGCTT
CCAGGACTAATGTTGTTATTGCTGCTCCTCAAACGTGGCGAGGATGGGGA
GTCCAGGGTGGAGGAGCTACGACTGGTATCCCGCGTGCTGGTCGATCCTC
CACAGGCCAGTCCAGCCAGATTGCCATTGGACACCGCCGCCTTGAGTTGC
TCCTCCAGATTATTCAGATTCTGCTCGATGCTCAGGCGTATATCCTCGTT
CAAGGACGAACTCCCGGCAAAGGAATTCCGATTCATGGTGCCCAACGGTG
AGGGGGTCAGTGTTCCCGTGGCTGCCGGTGAGGTTAGGAAATTGAAACCT
CCGGCTCCGCCAGCATTGTTGTTTGGCGTGGCCGGTGTGCAGGACAAGGG
ATTCACATAGAAGAAGGAGTTGTGCGCCGTGGCCGAGGGCGTTGGTGGTC
TG
BO12265.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32048-PA | 2097 | CG32048-RA | 1468..2094 | 645..19 | 3135 | 100 | Minus |
CG32048-PB | 2715 | CG32048-RB | 2086..2712 | 645..19 | 3135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:21:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42673-RC | 3902 | CG32048-RB | 2543..3169 | 645..19 | 3135 | 100 | Minus |
CG42673-RB | 3618 | CG32048-RA | 2259..2885 | 645..19 | 3135 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:21:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9593150..9593776 | 645..19 | 3135 | 100 | Minus |
Blast to na_te.dros performed 2015-02-08 13:21:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 636..723 | 188..275 | 125 | 64.8 | Plus |
BO12265.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:56 Download gff for
BO12265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32048-PA | 1459..2097 | 18..652 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:39 Download gff for
BO12265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32048-PB | 2077..2715 | 18..652 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:45:18 Download gff for
BO12265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42673-RB | 2250..2885 | 19..652 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:27:44 Download gff for
BO12265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42673-RB | 2250..2885 | 19..652 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:27:44 Download gff for
BO12265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9593141..9593776 | 19..652 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:45:18 Download gff for
BO12265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9586241..9586876 | 19..652 | 99 | | Minus |
BO12265.5prime Sequence
873 bp (836 high quality bases) assembled on 2006-04-20
> BO12265.5prime
GAAGTTATCAGTCGACATGAAGCACGAGAAGACCCTAGCCATGGCTGCTC
CGCACAAGCAGCGCCATGCGGACAGCTCCGCCCACGTAGTTCCACGTAGT
CCCATAACCAAGGCCTTTGATTTCCTGCCCTGGACGCGAAGTCGCAGCAA
GGTCAACATGACCAAGGTTCAAAGTCAGCCGGCGGAACAGCAGGCCTCTG
TTTCCACGGTTACCCCTGCAGAGAAATCCTCGGAGGTGCACTATCACAAG
AACATTTTCCGCAGTGGCGGTGGTCTCATCCGTGATATCCTGGTGGGAGA
TAAAAATCTGCAGCTTAAGGATAAGCCACCACAGTCTCCCGTTCCTTCGC
ACAAAAAGAAACAGAAGCACCTGTCGCGCAACAAAAGCTTGGATATTCGA
GAACTTATTGGCTGTGTGGAGCGGGAGATGGCTCCTGCGACGGGAGGAGG
TCCTGTGAGTCAACCGCCACGTTTCATAGATGACACCTACATAGACCACA
AGCCCAAGCACATACTCTTCAATGACGATGAGAATACGGTGTACATTATA
AAGAAGGAGCAGCCCGTGGCCAAGTCCAGTCACAAGGCCAGCAATTCCAC
ATCCAATGCTGCCCAATCGAATGGAGATGTTCTGAAGGCGCGGTTGAAGT
TTAAGAGATTACCCGGCGATCACTATGAAGCATCGCCGGAGGCGCTCCGA
CGGGCACATCTTCTCCACCAGCGATCCGAGCAGCGTCATCAGCTGCAGCG
GCGCAAGAGTCTCAGCGATCAGCAGAGCAGCTCCAGCCTGAGCAGTGGCG
GCGGTGGAGGTGGCAATGCTAATGGCAGCATTATGTTGGAACGCCCAAAA
CCGATAAGCCGCGCAAGAAGCTT
BO12265.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32048-PB | 2715 | CG32048-RB | 1..830 | 17..846 | 4125 | 99.8 | Plus |
CG32048-PB | 2715 | CG32048-RB | 829..858 | 844..873 | 150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:03:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42673-RC | 3902 | CG32048-RB | 457..1315 | 16..873 | 4255 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:03:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9586990..9587848 | 16..873 | 4230 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:03:55 has no hits.
BO12265.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:57 Download gff for
BO12265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32048-PB | 1..858 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:41 Download gff for
BO12265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32048-PB | 1..858 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:17:23 Download gff for
BO12265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42673-RC | 452..1315 | 11..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:29:42 Download gff for
BO12265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42673-RC | 452..1315 | 11..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:29:42 Download gff for
BO12265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9586985..9587848 | 11..873 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:17:23 Download gff for
BO12265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9580085..9580948 | 11..873 | 99 | | Plus |
BO12265.complete Sequence
2746 bp assembled on 2008-01-17
GenBank Submission: FJ632387
> BO12265.complete
GAAGTTATCAGTCGACATGAAGCACGAGAAGACCCTAGCCATGGCTGCTC
CGCACAAGCAGCGCCATGCGGACAGCTCCGCCCACGTAGTTCCACGTAGT
CCCATAACCAAGGCCTTTGATTTCCTGCCCTGGACGCGAAGTCGCAGCAA
GGTCAACATGACCAAGGTTCAAAGTCAGCCGGCGGAACAGCAGGCCTCTG
TTTCCACGGTTACCCCTGCAGAGAAATCCTCGGAGGTGCACTATCACAAG
AACATTTTCCGCAGTGGCGGTGGTCTCATCCGTGATATCCTGGTGGGAGA
TAAAAATCTGCAGCTTAAGGATAAGCCACCACAGTCTCCCGTTCCTTCGC
ACAAAAAGAAACAGAAGCACCTGTCGCGCAACAAAAGCTTGGATATTCGA
GAACTTATTGGCTGTGTGGAGCGGGAGATGGCTCCTGCGACGGGAGGAGG
TCCTGTGAGTCAACCGCCACGTTTCATAGATGACACCTACATAGACCACA
AGCCCAAGCACATACTCTTCAATGACGATGAGAATACGGTGTACATTATA
AAGAAGGAGCAGCCCGTGGCCAAGTCCAGTCACAAGGCCAGCAATTCCAC
ATCCAATGCTGCCCAATCGAATGGAGATGTTCTGAAGGCGCGGTTGAAGT
TTAAGAGATTACCCGGCGATCACTATGAAGCATCGCCGGAGGCGCTCCGA
CGGGCACATCTTCTCCACCAGCGATCCGAGCAGCGTCATCAGCTGCAGCG
GCGCAAGAGTCTCAGCGATCAGCAGAGCAGCTCCAGCCTGAGCAGTGGCG
GCGGTGGAGGTGGCAATGCTAATGGCAGCATTATGTTGGAACGCCCCAAA
ACCGATAAGCCGCGCAAGAAGCTTTCGTTCCGGGAACCCATTATTGCCGG
CGACCAAATACTACCACTCATACTCAGCGAACAGCGGCAGGCGAGACAGA
GGCGTCGCAGCTCACCCTTGGAGCGAAGCAGGGTTGGCTTAGCGATAGCG
GACTGTGATAATTTATGCAATAATCGCACAAAGGATGCAATTTCCTGCGG
CTGTGCGACAAGCGATCCGGAGTCTCAGGCGATGCGCATCGTTCGCACCG
TGGGACAAGCCTTTGAAGTGTGCCACAAATTTAATCTTCATAAGAATTCC
CTGGAACCCAATGACGAACGCTCCGATATATCCTCATCGGAGCTGCTGGA
CGTGGAGCAGATCAGCGAGCAGCAGCTATCCGAGGATGGTGAACGCGGTG
GCGGCGACAACGAGACGCCCAAGAAAGAGCACTTGGCCATAACGCCCGAT
CTGAACCACACGCAGCCGCAGCGGCCGAACCACTTGGATATAATGCCATC
GCATTCGAGTCTACGCAAATCGAACAGCCTGCTGTGCGATGTGGACGACA
AGTCGCCAGGCTCACCTTCCTCGCCGCGCTCTGAGATCACTCAGCTGAAG
GACCAGCTGGAGGCACAGGCTCTGCAGACGCGCCAGGCTCTGGGTCAACT
GATGCTGGTGCGGGAGCAGCTCATCTCGGAGACCAATGCGCGCATCGAGG
CACAGGCGCGCACCCAACAATTGCTGCAGCAGAACCGCGAGCTCCTGGAG
CACCTGGCCTCTTTGGGGGCCTACAATGAGCAGCAGACAGCCGGACTCAC
GTCGGCCAACATCGGAATGGCGCCACAGCAATCGCAGCTACAAATGCTGC
TGCAGGCCACGAGCAACAACAACAATCTGGCCACGATCAACCAACAGATC
AGCAATCTTGGCAGCATCAATCAGCAGTTGACCTCGCTGAGTCACCAGCT
GAGTGGCCTGAATCAGCAGAGCCAGCACCTCCAGAATCTGCAGCAGCAGC
AGCAACAACAGCAGCAGCAGCAGCAGCAACAAACGCAGGCGGCACCGACT
GCGGCCACGCCCCCTCCCGCTGCGGGGGGCAGTAGTCCGTATCCGTCGAT
GAGTGCGCTGCAGAGCATCAGCAATCAGCTGCAGCAGCAGCAGCAACAAC
AGCAGCAGGACGCATTGTCCAAGGATCTGTTCCAGGTGAATCAGGAGCTG
TTGAATCGCCTGCAGGCACTGAACTTGAATGCCAATCCTGGCCAGAGCCA
GCCAACGCCCTCGGCCACGGCGCACAACTCCTTCTTCTATGTGAATCCCT
TGTCCTGCACACCGGCCACGCCAAACAACAATGCTGGCGGAGCCGGAGGT
TTCAATTTCCTAACCTCACCGGCAGCCACGGGAACACTGACCCCCTCACC
GTTGGGCACCATGAATCGGAATTCCTTTGCCGGGAGTTCGTCCTTGAACG
AGGATATACGCCTGAGCATCGAGCAGAATCTGAATAATCTGGAGGAGCAA
CTCAAGGCGGCGGTGTCCAATGGCAATCTGGCTGGACTGGCCTGTGGAGG
ATCGACCAGCACGCGGGATACCAGTCGTAGCTCCTCCACCCTGGACTCCC
CATCCTCGCCACGTTTGAGGAGCAGCAATAACAACATTAGTCCTGGAAGC
AGCAATGGCAACCAGAACCACAACAATAATAGCAATAGCAATAGTAGCAG
CAGTCGGGAAACGCGATTCAATACGGTTTTGCTGAGGGTCACCGATGAGG
CGGGTCACCAAAGAAAGCTATCGGCCACGCCCAGTTTCATCACACGCAGC
ACCAGCGAGAAGGTGCCCAATCGCAGCCAGATGATGAGCCAGGTGCAGAG
GACCACCTGGGCCAGGCACACCACCAAAGCAAGCTTTCTAGACCAT
BO12265.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:32:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42673-RC | 2715 | CG42673-PC | 1..2712 | 17..2728 | 13545 | 100 | Plus |
CG42673-RB | 2097 | CG42673-PB | 437..2094 | 1071..2728 | 8290 | 100 | Plus |
CG42673-RD | 1317 | CG42673-PD | 437..1049 | 1071..1683 | 3050 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:32:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42673-RC | 3902 | CG32048-RB | 457..3169 | 16..2728 | 13550 | 100 | Plus |
CG42673-RB | 3618 | CG32048-RA | 1228..2885 | 1071..2728 | 8290 | 100 | Plus |
CG42673-RD | 3582 | CG42673-RD | 1228..1840 | 1071..1683 | 3050 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:32:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9586990..9588046 | 16..1072 | 5270 | 99.9 | Plus |
3L | 28110227 | 3L | 9592725..9593776 | 1677..2728 | 5260 | 100 | Plus |
3L | 28110227 | 3L | 9588238..9588444 | 1071..1277 | 1035 | 100 | Plus |
3L | 28110227 | 3L | 9592085..9592257 | 1384..1556 | 865 | 100 | Plus |
3L | 28110227 | 3L | 9592332..9592456 | 1554..1678 | 625 | 100 | Plus |
3L | 28110227 | 3L | 9591239..9591347 | 1276..1384 | 545 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 20:32:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 636..723 | 2559..2472 | 125 | 64.8 | Minus |
BO12265.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:13 Download gff for
BO12265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32048-RB | 1..2715 | 17..2729 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:23 Download gff for
BO12265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32048-RB | 458..3169 | 17..2730 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:15 Download gff for
BO12265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42673-RC | 458..3169 | 17..2730 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:13 Download gff for
BO12265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32048-RB | 452..3169 | 11..2728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:22 Download gff for
BO12265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42673-RC | 458..3169 | 17..2730 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:22 Download gff for
BO12265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9592086..9592256 | 1385..1555 | 100 | -> | Plus |
3L | 9592334..9592456 | 1556..1678 | 100 | -> | Plus |
3L | 9586991..9588046 | 17..1072 | 99 | -> | Plus |
3L | 9588240..9588444 | 1073..1277 | 100 | -> | Plus |
3L | 9591241..9591347 | 1278..1384 | 100 | -> | Plus |
3L | 9592727..9593776 | 1679..2730 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:15 Download gff for
BO12265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9580091..9581146 | 17..1072 | 99 | -> | Plus |
arm_3L | 9581340..9581544 | 1073..1277 | 100 | -> | Plus |
arm_3L | 9584341..9584447 | 1278..1384 | 100 | -> | Plus |
arm_3L | 9585186..9585356 | 1385..1555 | 100 | -> | Plus |
arm_3L | 9585434..9585556 | 1556..1678 | 100 | -> | Plus |
arm_3L | 9585827..9586876 | 1679..2730 | 99 | | Plus |
BO12265.pep Sequence
Translation from 16 to 2746
> BO12265.pep
MKHEKTLAMAAPHKQRHADSSAHVVPRSPITKAFDFLPWTRSRSKVNMTK
VQSQPAEQQASVSTVTPAEKSSEVHYHKNIFRSGGGLIRDILVGDKNLQL
KDKPPQSPVPSHKKKQKHLSRNKSLDIRELIGCVEREMAPATGGGPVSQP
PRFIDDTYIDHKPKHILFNDDENTVYIIKKEQPVAKSSHKASNSTSNAAQ
SNGDVLKARLKFKRLPGDHYEASPEALRRAHLLHQRSEQRHQLQRRKSLS
DQQSSSSLSSGGGGGGNANGSIMLERPKTDKPRKKLSFREPIIAGDQILP
LILSEQRQARQRRRSSPLERSRVGLAIADCDNLCNNRTKDAISCGCATSD
PESQAMRIVRTVGQAFEVCHKFNLHKNSLEPNDERSDISSSELLDVEQIS
EQQLSEDGERGGGDNETPKKEHLAITPDLNHTQPQRPNHLDIMPSHSSLR
KSNSLLCDVDDKSPGSPSSPRSEITQLKDQLEAQALQTRQALGQLMLVRE
QLISETNARIEAQARTQQLLQQNRELLEHLASLGAYNEQQTAGLTSANIG
MAPQQSQLQMLLQATSNNNNLATINQQISNLGSINQQLTSLSHQLSGLNQ
QSQHLQNLQQQQQQQQQQQQQQTQAAPTAATPPPAAGGSSPYPSMSALQS
ISNQLQQQQQQQQQDALSKDLFQVNQELLNRLQALNLNANPGQSQPTPSA
TAHNSFFYVNPLSCTPATPNNNAGGAGGFNFLTSPAATGTLTPSPLGTMN
RNSFAGSSSLNEDIRLSIEQNLNNLEEQLKAAVSNGNLAGLACGGSTSTR
DTSRSSSTLDSPSSPRLRSSNNNISPGSSNGNQNHNNNSNSNSSSSRETR
FNTVLLRVTDEAGHQRKLSATPSFITRSTSEKVPNRSQMMSQVQRTTWAR
HTTKASFLDH
BO12265.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:25:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42673-PC | 904 | CG32048-PB | 1..904 | 1..904 | 4612 | 100 | Plus |
CG42673-PB | 698 | CG32048-PA | 127..698 | 333..904 | 2806 | 97 | Plus |
CG42673-PD | 438 | CG42673-PD | 127..350 | 333..556 | 1038 | 92 | Plus |
Pdp1-PC | 570 | CG17888-PC | 17..306 | 586..852 | 188 | 29.6 | Plus |
Pdp1-PL | 581 | CG17888-PL | 17..306 | 586..852 | 188 | 29.6 | Plus |