Clone Sequence Records
BO12266.3prime Sequence
860 bp (814 high quality bases) assembled on 2006-04-20
> BO12266.3prime
ATGGTCTAGAAAGCTTGCATCGCTTTCTGTCGCAACATTTGCGCCATTGT
TCTCCAGGCACTGCCAAATGGTCTTGGCCGCTGGACGATCCTCGCTGAGA
GCATTTGTGCACAGATAAAACAGCTCCACGACGCAGTTGTAATCGTCGCT
AAGTTGAAAGGCCACTGGCAATGGTGGTCGTGTACCATAGGCGGAATGAA
GGTTATTCAGTGTAAAGTAAGAGATATCGTTCTCCTTCGTGTCATCATCT
TCTTCATCGTCTTCCTCCTCCTCTTCCTTCTCCTCCTCATCATCCTCCTC
GTCATAATCTTGACTCATATCGTTGTCTGTGTGTTCTTCCATTGCAGAAG
GTAGTCCGTTCTTGTTTTCATCGCTGGAGAAGTCCAACTGTTTGCACTGC
AGCTTGTCCGTGTCGGTGGGTAAATCGTGCGAACTGTCCATATCCTCTCC
CAGTGCTGCATCAAGCTCCAAGGTATGTGGAGGCACCAAAGCAAGGGTTT
CGTAGATAACCAGGCCAAAGCTGAATATGTCTGCCTTGCTGTCAATAACA
TCCACTTCGTCTATGACCTCCGGTGCGCACCAGAGGTTAGTTCCCACATA
GCGCAGTCCGGGATTCTTTAGGAAATTAACCTCGCCCTGCTCGTCCAGCG
GAAGAGAGACTCCAAAATCGCACAGCTTACAAATCTCAAACTCGCCTTTG
ACCAGGACATTAAAGGACTTAAGGTCGCCGTGCATGAGGTGAGCTTCGTT
GTGAAAAAAGTCTAGTGCCTGGGCCACGTCCATGATCATCTTATAGGTAT
GTTTGGCCGGCAACGGGCCCAGATCCTCGTCGTGTCGCTCCTCGAGTATG
GGAGCCCAAT
BO12266.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8173-PA | 1197 | CG8173-RA | 362..1194 | 851..19 | 4140 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:24:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8173-RA | 1643 | CG8173-RA | 568..1406 | 858..19 | 4160 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:24:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17707638..17708213 | 19..594 | 2880 | 100 | Plus |
X | 23542271 | X | 17708288..17708546 | 593..851 | 1280 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:24:54 has no hits.
BO12266.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:58 Download gff for
BO12266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8173-PA | 354..1197 | 18..860 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:42 Download gff for
BO12266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8173-PA | 354..1197 | 18..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:54:53 Download gff for
BO12266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8173-RA | 566..1406 | 19..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 21:11:14 Download gff for
BO12266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8173-RA | 566..1406 | 19..860 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 21:11:14 Download gff for
BO12266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17707638..17708212 | 19..593 | 100 | <- | Plus |
X | 17708289..17708554 | 594..860 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:54:53 Download gff for
BO12266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17601671..17602245 | 19..593 | 100 | <- | Plus |
arm_X | 17602322..17602587 | 594..860 | 98 | | Plus |
BO12266.5prime Sequence
851 bp (807 high quality bases) assembled on 2006-04-20
> BO12266.5prime
GAAGTTATCAGTCGACATGGACACGCCACGCCGCAAGCTAAGAAATTTGC
ACCTGGAGAATGTCCAGAACAGCAGCACTCCCATCAACGTGCCGCCATCG
CCGATGATGAAGACCCTGGGCCACGGCACTGGGATCCGGGTCTACCGCTT
GGACCGCTCGCCTCGTCTCGGCGAAATCCGCTCGCCCTGGGCCGTCAAGC
GGATCACGCAGAACATGCGGGTCAAGAAGGATACACTCTTCAACGAGCGA
ATTGTTCACGAGGCCGATATCCTGCGCAAACTGAAGCATCCAAACATCGT
GGGATTCCGTGGCGTTATCACCAATGACGAGGGCATCAACACACTGGCAC
TTGAAATGTGCACCACTTCACTGGGCTCCATACTCGAGGAGCGACACGAC
GAGGATCTGGGCCCGTTGCCGGCCAAACATACCTATAAGATGATCATGGA
CGTGGCCCAGGCACTAGACTTTCTTCACAACGAAGCTCACCTCATGCACG
GCGACCTTAAGTCCTTTAATGTCCTGGTCAAAGGCGAGTTTGAGATTTGT
AAGCTGTGCGATTTTGGAGTCTCTCTTCCGCTGGACGAGCAGGGCGAGGT
TAATTTCCTAAAGAATCCCGGACTGCGCTATGTGGGAACTAACCTCTGGT
GCGCACCGGAGGTCATAGACGAAGTGGATGTTATTGACAGCAAGGCAGAC
ATATTCAGCTTTGGCCTGGTTATCTACGAAACCCTTGCTTTGGTGCCTCC
ACATACCTTGGAGCTTGATGCAGCACTGGGAGAGGATATGGACAGTTCGC
ACGATTTACCCACCGACACGGACAAGCTGCAGTGCAAACAGTTGGACTTC
T
BO12266.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8173-PA | 1197 | CG8173-RA | 1..835 | 17..851 | 4175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:03:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8173-RA | 1643 | CG8173-RA | 213..1047 | 17..851 | 4175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:03:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17708288..17708648 | 636..276 | 1805 | 100 | Minus |
X | 23542271 | X | 17709182..17709441 | 276..17 | 1300 | 100 | Minus |
X | 23542271 | X | 17707997..17708213 | 851..635 | 1085 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 13:03:53 has no hits.
BO12266.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:59 Download gff for
BO12266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8173-PA | 1..835 | 17..851 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:43 Download gff for
BO12266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8173-PA | 1..835 | 17..851 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:17:22 Download gff for
BO12266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8173-RA | 211..1047 | 13..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:29:37 Download gff for
BO12266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8173-RA | 211..1047 | 13..851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:29:37 Download gff for
BO12266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17707997..17708212 | 636..851 | 100 | <- | Minus |
X | 17708289..17708647 | 277..635 | 100 | <- | Minus |
X | 17709182..17709443 | 13..276 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:17:22 Download gff for
BO12266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17602030..17602245 | 636..851 | 100 | <- | Minus |
arm_X | 17602322..17602680 | 277..635 | 100 | <- | Minus |
arm_X | 17603215..17603476 | 13..276 | 99 | | Minus |
BO12266.complete Sequence
1228 bp assembled on 2006-10-11
GenBank Submission: FJ638696
> BO12266.complete
GAAGTTATCAGTCGACATGGACACGCCACGCCGCAAGCTAAGAAATTTGC
ACCTGGAGAATGTCCAGAACAGCAGCACTCCCATCAACGTGCCGCCATCG
CCGATGATGAAGACCCTGGGCCACGGCACTGGGATCCGGGTCTACCGCTT
GGACCGCTCGCCTCGTCTCGGCGAAATCCGCTCGCCCTGGGCCGTCAAGC
GGATCACGCAGAACATGCGGGTCAAGAAGGATACACTCTTCAACGAGCGA
ATTGTTCACGAGGCCGATATCCTGCGCAAACTGAAGCATCCAAACATCGT
GGGATTCCGTGGCGTTATCACCAATGACGAGGGCATCAACACACTGGCAC
TTGAAATGTGCACCACTTCACTGGGCTCCATACTCGAGGAGCGACACGAC
GAGGATCTGGGCCCGTTGCCGGCCAAACATACCTATAAGATGATCATGGA
CGTGGCCCAGGCACTAGACTTTCTTCACAACGAAGCTCACCTCATGCACG
GCGACCTTAAGTCCTTTAATGTCCTGGTCAAAGGCGAGTTTGAGATTTGT
AAGCTGTGCGATTTTGGAGTCTCTCTTCCGCTGGACGAGCAGGGCGAGGT
TAATTTCCTAAAGAATCCCGGACTGCGCTATGTGGGAACTAACCTCTGGT
GCGCACCGGAGGTCATAGACGAAGTGGATGTTATTGACAGCAAGGCAGAC
ATATTCAGCTTTGGCCTGGTTATCTACGAAACCCTTGCTTTGGTGCCTCC
ACATACCTTGGAGCTTGATGCAGCACTGGGAGAGGATATGGACAGTTCGC
ACGATTTACCCACCGACACGGACAAGCTGCAGTGCAAACAGTTGGACTTC
TCCAGCGATGAAAACAAGAACGGACTACCTTCTGCAATGGAAGAACACAC
AGACAACGATATGAGTCAAGATTATGACGAGGAGGATGATGAGGAGGAGA
AGGAAGAGGAGGAGGAAGACGATGAAGAAGATGATGACACGAAGGAGAAC
GATATCTCTTACTTTACACTGAATAACCTTCATTCCGCCTATGGTACACG
ACCACCATTGCCAGTGGCCTTTCAACTTAGCGACGATTACAACTGCGTCG
TGGAGCTGTTTTATCTGTGCACAAATGCTCTCAGCGAGGATCGTCCAGCG
GCCAAGACCATTTGGCAGTGCCTGGAGAACAATGGCGCAAATGTTGCGAC
AGAAAGCGATGCAAGCTTTCTAGACCAT
BO12266.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:56:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8173-RA | 1197 | CG8173-PA | 1..1194 | 17..1210 | 5970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:56:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8173-RA | 1643 | CG8173-RA | 213..1406 | 17..1210 | 5970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:56:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17707638..17708213 | 1210..635 | 2880 | 100 | Minus |
X | 23542271 | X | 17708288..17708648 | 636..276 | 1805 | 100 | Minus |
X | 23542271 | X | 17709182..17709441 | 276..17 | 1300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:56:37 has no hits.
BO12266.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:40 Download gff for
BO12266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8173-RA | 1..1197 | 17..1211 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:09 Download gff for
BO12266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8173-RA | 216..1411 | 13..1210 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:57 Download gff for
BO12266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8173-RA | 213..1406 | 17..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:40 Download gff for
BO12266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8173-RA | 216..1411 | 13..1210 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:38 Download gff for
BO12266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8173-RA | 213..1406 | 17..1212 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:38 Download gff for
BO12266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17707636..17708212 | 636..1212 | 99 | <- | Minus |
X | 17708289..17708647 | 277..635 | 100 | <- | Minus |
X | 17709182..17709441 | 17..276 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:57 Download gff for
BO12266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17601669..17602245 | 636..1212 | 99 | <- | Minus |
arm_X | 17602322..17602680 | 277..635 | 100 | <- | Minus |
arm_X | 17603215..17603474 | 17..276 | 100 | | Minus |
BO12266.pep Sequence
Translation from 16 to 1228
> BO12266.pep
MDTPRRKLRNLHLENVQNSSTPINVPPSPMMKTLGHGTGIRVYRLDRSPR
LGEIRSPWAVKRITQNMRVKKDTLFNERIVHEADILRKLKHPNIVGFRGV
ITNDEGINTLALEMCTTSLGSILEERHDEDLGPLPAKHTYKMIMDVAQAL
DFLHNEAHLMHGDLKSFNVLVKGEFEICKLCDFGVSLPLDEQGEVNFLKN
PGLRYVGTNLWCAPEVIDEVDVIDSKADIFSFGLVIYETLALVPPHTLEL
DAALGEDMDSSHDLPTDTDKLQCKQLDFSSDENKNGLPSAMEEHTDNDMS
QDYDEEDDEEEKEEEEEDDEEDDDTKENDISYFTLNNLHSAYGTRPPLPV
AFQLSDDYNCVVELFYLCTNALSEDRPAAKTIWQCLENNGANVATESDAS
FLDH
BO12266.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8173-PA | 398 | CG8173-PA | 1..398 | 1..398 | 2110 | 100 | Plus |
Tao-PH | 611 | CG14217-PH | 30..224 | 31..246 | 180 | 28 | Plus |
Tao-PJ | 615 | CG14217-PJ | 30..224 | 31..246 | 180 | 28 | Plus |
Tao-PI | 1038 | CG14217-PI | 30..224 | 31..246 | 180 | 28 | Plus |
Tao-PF | 1039 | CG14217-PF | 30..224 | 31..246 | 180 | 28 | Plus |