Clone BO12266 Report

Search the DGRC for BO12266

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:122
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptCG8173-RA
Protein status:BO12266.pep: validated full length
Sequenced Size:1228

Clone Sequence Records

BO12266.3prime Sequence

860 bp (814 high quality bases) assembled on 2006-04-20

> BO12266.3prime
ATGGTCTAGAAAGCTTGCATCGCTTTCTGTCGCAACATTTGCGCCATTGT
TCTCCAGGCACTGCCAAATGGTCTTGGCCGCTGGACGATCCTCGCTGAGA
GCATTTGTGCACAGATAAAACAGCTCCACGACGCAGTTGTAATCGTCGCT
AAGTTGAAAGGCCACTGGCAATGGTGGTCGTGTACCATAGGCGGAATGAA
GGTTATTCAGTGTAAAGTAAGAGATATCGTTCTCCTTCGTGTCATCATCT
TCTTCATCGTCTTCCTCCTCCTCTTCCTTCTCCTCCTCATCATCCTCCTC
GTCATAATCTTGACTCATATCGTTGTCTGTGTGTTCTTCCATTGCAGAAG
GTAGTCCGTTCTTGTTTTCATCGCTGGAGAAGTCCAACTGTTTGCACTGC
AGCTTGTCCGTGTCGGTGGGTAAATCGTGCGAACTGTCCATATCCTCTCC
CAGTGCTGCATCAAGCTCCAAGGTATGTGGAGGCACCAAAGCAAGGGTTT
CGTAGATAACCAGGCCAAAGCTGAATATGTCTGCCTTGCTGTCAATAACA
TCCACTTCGTCTATGACCTCCGGTGCGCACCAGAGGTTAGTTCCCACATA
GCGCAGTCCGGGATTCTTTAGGAAATTAACCTCGCCCTGCTCGTCCAGCG
GAAGAGAGACTCCAAAATCGCACAGCTTACAAATCTCAAACTCGCCTTTG
ACCAGGACATTAAAGGACTTAAGGTCGCCGTGCATGAGGTGAGCTTCGTT
GTGAAAAAAGTCTAGTGCCTGGGCCACGTCCATGATCATCTTATAGGTAT
GTTTGGCCGGCAACGGGCCCAGATCCTCGTCGTGTCGCTCCTCGAGTATG
GGAGCCCAAT

BO12266.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG8173-PA 1197 CG8173-RA 362..1194 851..19 4140 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:24:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8173-RA 1643 CG8173-RA 568..1406 858..19 4160 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:24:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17707638..17708213 19..594 2880 100 Plus
X 23542271 X 17708288..17708546 593..851 1280 99.6 Plus
Blast to na_te.dros performed on 2015-02-12 19:24:54 has no hits.

BO12266.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:58 Download gff for BO12266.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8173-PA 354..1197 18..860 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:42 Download gff for BO12266.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8173-PA 354..1197 18..860 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:54:53 Download gff for BO12266.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8173-RA 566..1406 19..860 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 21:11:14 Download gff for BO12266.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8173-RA 566..1406 19..860 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 21:11:14 Download gff for BO12266.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17707638..17708212 19..593 100 <- Plus
X 17708289..17708554 594..860 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:54:53 Download gff for BO12266.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17601671..17602245 19..593 100 <- Plus
arm_X 17602322..17602587 594..860 98   Plus

BO12266.5prime Sequence

851 bp (807 high quality bases) assembled on 2006-04-20

> BO12266.5prime
GAAGTTATCAGTCGACATGGACACGCCACGCCGCAAGCTAAGAAATTTGC
ACCTGGAGAATGTCCAGAACAGCAGCACTCCCATCAACGTGCCGCCATCG
CCGATGATGAAGACCCTGGGCCACGGCACTGGGATCCGGGTCTACCGCTT
GGACCGCTCGCCTCGTCTCGGCGAAATCCGCTCGCCCTGGGCCGTCAAGC
GGATCACGCAGAACATGCGGGTCAAGAAGGATACACTCTTCAACGAGCGA
ATTGTTCACGAGGCCGATATCCTGCGCAAACTGAAGCATCCAAACATCGT
GGGATTCCGTGGCGTTATCACCAATGACGAGGGCATCAACACACTGGCAC
TTGAAATGTGCACCACTTCACTGGGCTCCATACTCGAGGAGCGACACGAC
GAGGATCTGGGCCCGTTGCCGGCCAAACATACCTATAAGATGATCATGGA
CGTGGCCCAGGCACTAGACTTTCTTCACAACGAAGCTCACCTCATGCACG
GCGACCTTAAGTCCTTTAATGTCCTGGTCAAAGGCGAGTTTGAGATTTGT
AAGCTGTGCGATTTTGGAGTCTCTCTTCCGCTGGACGAGCAGGGCGAGGT
TAATTTCCTAAAGAATCCCGGACTGCGCTATGTGGGAACTAACCTCTGGT
GCGCACCGGAGGTCATAGACGAAGTGGATGTTATTGACAGCAAGGCAGAC
ATATTCAGCTTTGGCCTGGTTATCTACGAAACCCTTGCTTTGGTGCCTCC
ACATACCTTGGAGCTTGATGCAGCACTGGGAGAGGATATGGACAGTTCGC
ACGATTTACCCACCGACACGGACAAGCTGCAGTGCAAACAGTTGGACTTC
T

BO12266.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG8173-PA 1197 CG8173-RA 1..835 17..851 4175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:03:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG8173-RA 1643 CG8173-RA 213..1047 17..851 4175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:03:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17708288..17708648 636..276 1805 100 Minus
X 23542271 X 17709182..17709441 276..17 1300 100 Minus
X 23542271 X 17707997..17708213 851..635 1085 100 Minus
Blast to na_te.dros performed on 2015-02-11 13:03:53 has no hits.

BO12266.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:30:59 Download gff for BO12266.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8173-PA 1..835 17..851 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:43 Download gff for BO12266.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8173-PA 1..835 17..851 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:17:22 Download gff for BO12266.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8173-RA 211..1047 13..851 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:29:37 Download gff for BO12266.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8173-RA 211..1047 13..851 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:29:37 Download gff for BO12266.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17707997..17708212 636..851 100 <- Minus
X 17708289..17708647 277..635 100 <- Minus
X 17709182..17709443 13..276 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:17:22 Download gff for BO12266.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17602030..17602245 636..851 100 <- Minus
arm_X 17602322..17602680 277..635 100 <- Minus
arm_X 17603215..17603476 13..276 99   Minus

BO12266.complete Sequence

1228 bp assembled on 2006-10-11

GenBank Submission: FJ638696

> BO12266.complete
GAAGTTATCAGTCGACATGGACACGCCACGCCGCAAGCTAAGAAATTTGC
ACCTGGAGAATGTCCAGAACAGCAGCACTCCCATCAACGTGCCGCCATCG
CCGATGATGAAGACCCTGGGCCACGGCACTGGGATCCGGGTCTACCGCTT
GGACCGCTCGCCTCGTCTCGGCGAAATCCGCTCGCCCTGGGCCGTCAAGC
GGATCACGCAGAACATGCGGGTCAAGAAGGATACACTCTTCAACGAGCGA
ATTGTTCACGAGGCCGATATCCTGCGCAAACTGAAGCATCCAAACATCGT
GGGATTCCGTGGCGTTATCACCAATGACGAGGGCATCAACACACTGGCAC
TTGAAATGTGCACCACTTCACTGGGCTCCATACTCGAGGAGCGACACGAC
GAGGATCTGGGCCCGTTGCCGGCCAAACATACCTATAAGATGATCATGGA
CGTGGCCCAGGCACTAGACTTTCTTCACAACGAAGCTCACCTCATGCACG
GCGACCTTAAGTCCTTTAATGTCCTGGTCAAAGGCGAGTTTGAGATTTGT
AAGCTGTGCGATTTTGGAGTCTCTCTTCCGCTGGACGAGCAGGGCGAGGT
TAATTTCCTAAAGAATCCCGGACTGCGCTATGTGGGAACTAACCTCTGGT
GCGCACCGGAGGTCATAGACGAAGTGGATGTTATTGACAGCAAGGCAGAC
ATATTCAGCTTTGGCCTGGTTATCTACGAAACCCTTGCTTTGGTGCCTCC
ACATACCTTGGAGCTTGATGCAGCACTGGGAGAGGATATGGACAGTTCGC
ACGATTTACCCACCGACACGGACAAGCTGCAGTGCAAACAGTTGGACTTC
TCCAGCGATGAAAACAAGAACGGACTACCTTCTGCAATGGAAGAACACAC
AGACAACGATATGAGTCAAGATTATGACGAGGAGGATGATGAGGAGGAGA
AGGAAGAGGAGGAGGAAGACGATGAAGAAGATGATGACACGAAGGAGAAC
GATATCTCTTACTTTACACTGAATAACCTTCATTCCGCCTATGGTACACG
ACCACCATTGCCAGTGGCCTTTCAACTTAGCGACGATTACAACTGCGTCG
TGGAGCTGTTTTATCTGTGCACAAATGCTCTCAGCGAGGATCGTCCAGCG
GCCAAGACCATTTGGCAGTGCCTGGAGAACAATGGCGCAAATGTTGCGAC
AGAAAGCGATGCAAGCTTTCTAGACCAT

BO12266.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG8173-RA 1197 CG8173-PA 1..1194 17..1210 5970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG8173-RA 1643 CG8173-RA 213..1406 17..1210 5970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17707638..17708213 1210..635 2880 100 Minus
X 23542271 X 17708288..17708648 636..276 1805 100 Minus
X 23542271 X 17709182..17709441 276..17 1300 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:56:37 has no hits.

BO12266.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:40 Download gff for BO12266.complete
Subject Subject Range Query Range Percent Splice Strand
CG8173-RA 1..1197 17..1211 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:09 Download gff for BO12266.complete
Subject Subject Range Query Range Percent Splice Strand
CG8173-RA 216..1411 13..1210 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:57 Download gff for BO12266.complete
Subject Subject Range Query Range Percent Splice Strand
CG8173-RA 213..1406 17..1212 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:40 Download gff for BO12266.complete
Subject Subject Range Query Range Percent Splice Strand
CG8173-RA 216..1411 13..1210 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:38 Download gff for BO12266.complete
Subject Subject Range Query Range Percent Splice Strand
CG8173-RA 213..1406 17..1212 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:38 Download gff for BO12266.complete
Subject Subject Range Query Range Percent Splice Strand
X 17707636..17708212 636..1212 99 <- Minus
X 17708289..17708647 277..635 100 <- Minus
X 17709182..17709441 17..276 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:57 Download gff for BO12266.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17601669..17602245 636..1212 99 <- Minus
arm_X 17602322..17602680 277..635 100 <- Minus
arm_X 17603215..17603474 17..276 100   Minus

BO12266.pep Sequence

Translation from 16 to 1228

> BO12266.pep
MDTPRRKLRNLHLENVQNSSTPINVPPSPMMKTLGHGTGIRVYRLDRSPR
LGEIRSPWAVKRITQNMRVKKDTLFNERIVHEADILRKLKHPNIVGFRGV
ITNDEGINTLALEMCTTSLGSILEERHDEDLGPLPAKHTYKMIMDVAQAL
DFLHNEAHLMHGDLKSFNVLVKGEFEICKLCDFGVSLPLDEQGEVNFLKN
PGLRYVGTNLWCAPEVIDEVDVIDSKADIFSFGLVIYETLALVPPHTLEL
DAALGEDMDSSHDLPTDTDKLQCKQLDFSSDENKNGLPSAMEEHTDNDMS
QDYDEEDDEEEKEEEEEDDEEDDDTKENDISYFTLNNLHSAYGTRPPLPV
AFQLSDDYNCVVELFYLCTNALSEDRPAAKTIWQCLENNGANVATESDAS
FLDH

BO12266.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG8173-PA 398 CG8173-PA 1..398 1..398 2110 100 Plus
Tao-PH 611 CG14217-PH 30..224 31..246 180 28 Plus
Tao-PJ 615 CG14217-PJ 30..224 31..246 180 28 Plus
Tao-PI 1038 CG14217-PI 30..224 31..246 180 28 Plus
Tao-PF 1039 CG14217-PF 30..224 31..246 180 28 Plus