Clone Sequence Records
BO12267.5prime Sequence
877 bp (800 high quality bases) assembled on 2006-04-20
> BO12267.5prime
GAAGTTATCAGTCGACATGGGCGCGGACATGGGCATCAATGGACCGCTCA
GCTATCACTCGTCCGCCTACAAGCGACCCGGCAACAATATCTACATCACC
AGGAGAATTGGCGAGGCGGTGGAACTAGAGCCGCATCTGCGAAAGCCCGT
GGAGAGCCAGAGTCCCATTGTGAATCCTCAGTTCCGACCCATGACCAATC
AAATGTTGCACCAGCAACACCAACAGATGCAGCAACAACAGCAACAGCAA
CAGTTGCAGCAACGCCAGCAACCGGGTTTCCTGCAGCAGCTCTTTGGCAT
AGGTGGCAGTGGTGGTGGTGGTGGTAGCGGTACCCAGCAACAGCAACATG
TGCGACCAGTGCCGCTGCAACAGCAGCAAGTGCAACAGATAGCGCAGCAA
CACCCGCAACAGCAACATCTTGTGGGCGGTCAGCCGACCACATTCCGAGC
TGTCTCCGAAAATGATCTTTATCTCTTGGGAGCCATTGAAAAGTTGGTGT
ATCGAGTGGATTACCTGGAGAGTCGCGTGCGGCGCTCGGAGCAGCTGATC
TACTATCTGATGGCCGGAAACAATCAGAAGGAGGTGAAGGATCCCTGTCC
CGCGAACTTCACGCGCATCAGCGACAACTGCTACTACATCAACAGCCAGC
AGCAGGTGAACTGGAAGACGGCAAACTCTGCCTGCAAGGGTCTAAACTCC
CACCTGGCCGAGTTCGAGAAGGTCTCGGAGAATGAGGAGATCATGGCCTA
TCTGCTGAATCAGCCGACGCATCGTGGTCGCGATTACTGGCTGGGCGGTC
TCAATCCTGGCCTCCTCTGGATCTGGTCCAATTCGGCTAAACCCGTGAAT
CCCAACATGAATCTCACATCCATTGCG
BO12267.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14866-PA | 1137 | CG14866-RA | 1..861 | 17..877 | 4255 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:17:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14866-RB | 1687 | CG14866-RB | 404..1264 | 17..877 | 4275 | 99.8 | Plus |
CG14866-RA | 1759 | CG14866-RA | 476..1336 | 17..877 | 4275 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:17:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15316946..15317438 | 17..509 | 2465 | 100 | Plus |
3R | 32079331 | 3R | 15317494..15317862 | 509..877 | 1815 | 99.5 | Plus |
Blast to na_te.dros performed 2015-02-02 11:17:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6923 | 208..377 | 248 | 62.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6938 | 229..434 | 235 | 59.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2483..2686 | 208..420 | 199 | 58.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2622..2691 | 209..278 | 179 | 72.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6782..6864 | 335..414 | 174 | 71.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6824 | 335..419 | 173 | 67.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2409 | 326..419 | 168 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2391 | 335..419 | 166 | 68.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6845 | 335..419 | 164 | 65.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1079..1164 | 335..420 | 160 | 65.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6881 | 335..419 | 156 | 68.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2376..2463 | 335..419 | 153 | 67 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2376 | 348..419 | 151 | 70.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6797 | 352..419 | 150 | 70.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..2861 | 335..412 | 140 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6776 | 362..419 | 130 | 72.4 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3259..3336 | 333..416 | 127 | 65.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1072..1130 | 361..419 | 124 | 67.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2358 | 367..419 | 121 | 69.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6503..6617 | 580..696 | 121 | 57.3 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3300..3381 | 335..417 | 116 | 63.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1097..1173 | 335..417 | 113 | 63.9 | Plus |
BO12267.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:00 Download gff for
BO12267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14866-PA | 1..861 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:45 Download gff for
BO12267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14866-PA | 1..861 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:18:07 Download gff for
BO12267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14866-RA | 476..1336 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:29:40 Download gff for
BO12267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14866-RA | 476..1336 | 17..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:29:40 Download gff for
BO12267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15316946..15317438 | 17..509 | 100 | -> | Plus |
3R | 15317495..15317862 | 510..877 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:18:07 Download gff for
BO12267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11142668..11143160 | 17..509 | 100 | -> | Plus |
arm_3R | 11143217..11143584 | 510..877 | 99 | | Plus |
BO12267.complete Sequence
1168 bp assembled on 2008-01-17
GenBank Submission: FJ638697
> BO12267.complete
GAAGTTATCAGTCGACATGGGCGCGGACATGGGCATCAATGGACCGCTCA
GCTATCACTCGTCCGCCTACAAGCGACCCGGCAACAATATCTACATCACC
AGGAGAATTGGCGAGGCGGTGGAACTAGAGCCGCATCTGCGAAAGCCCGT
GGAGAGCCAGAGTCCCATTGTGAATCCTCAGTTCCGACCCATGACCAATC
AAATGTTGCACCAGCAACACCAACAGATGCAGCAACAACAGCAACAGCAA
CAGTTGCAGCAACGCCAGCAACCGGGTTTCCTGCAGCAGCTCTTTGGCAT
AGGTGGCAGTGGTGGTGGTGGTGGTAGCGGTACCCAGCAACAGCAACATG
TGCGACCAGTGCCGCTGCAACAGCAGCAAGTGCAACAGATAGCGCAGCAA
CACCCGCAACAGCAACATCTTGTGGGCGGTCAGCCGACCACATTCCGAGC
TGTCTCCGAAAATGATCTTTATCTCTTGGGAGCCATTGAAAAGTTGGTGT
ATCGAGTGGATTACCTGGAGAGTCGCGTGCGGCGCTCGGAGCAGCTGATC
TACTATCTGATGGCCGGAAACAATCAGAAGGAGGTGAAGGATCCCTGTCC
CGCGAACTTCACGCGCATCAGCGACAACTGCTACTACATCAACAGCCAGC
AGCAGGTGAACTGGAAGACGGCAAACTCTGCCTGCAAGGGTCTAAACTCC
CACCTGGCCGAGTTCGAGAAGGTCTCGGAGAATGAGGAGATCATGGCCTA
TCTGCTGAATCAGCCGACGCATCGTGGTCGCGATTACTGGCTGGGCGGTC
TCAATCCTGGCCTCCTCTGGATCTGGTCCAATTCGGCTAAGCCGGTGAAT
CCCAACATGAATCTCACATCCATTGCGATGGCCCAGAAGGGGGAGAACTC
GACGGCCGCCAATCTGGTGGACAGTTCGGAGCAGGCGGCAGAGGAGGCGA
CCGGCGAGGATGTGCTGAACAACACGGTGCAAATAGAGGGCAAGGGTCGC
TGCCTACGGCTAAGTTACAATGCCGGAAAGCACAGCTATGTGTACTACGG
ACAGGAGTGCACCTCGCGGCACTACTACATCTGCGAGCACGAGGACAAGA
CGCTGGACAACAAGATCAAGAAGATCACCCGCGAGCTGAAGCTGTTCGAG
GCAAGCTTTCTAGACCAT
BO12267.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:36:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14866-RB | 1368 | CG14866-PB | 232..1365 | 17..1150 | 5670 | 100 | Plus |
CG14866-RA | 1137 | CG14866-PA | 1..1134 | 17..1150 | 5670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:36:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14866-RB | 1687 | CG14866-RB | 404..1537 | 17..1150 | 5670 | 100 | Plus |
CG14866-RA | 1759 | CG14866-RA | 476..1609 | 17..1150 | 5670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:36:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15317494..15318135 | 509..1150 | 3210 | 100 | Plus |
3R | 32079331 | 3R | 15316946..15317438 | 17..509 | 2465 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:36:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6923 | 208..377 | 248 | 62.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6938 | 229..434 | 235 | 59.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2483..2686 | 208..420 | 199 | 58.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2622..2691 | 209..278 | 179 | 72.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6782..6864 | 335..414 | 174 | 71.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6824 | 335..419 | 173 | 67.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2409 | 326..419 | 168 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2391 | 335..419 | 166 | 68.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6845 | 335..419 | 164 | 65.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1079..1164 | 335..420 | 160 | 65.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6881 | 335..419 | 156 | 68.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2376..2463 | 335..419 | 153 | 67 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2376 | 348..419 | 151 | 70.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6797 | 352..419 | 150 | 70.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..2861 | 335..412 | 140 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6776 | 362..419 | 130 | 72.4 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3259..3336 | 333..416 | 127 | 65.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1072..1130 | 361..419 | 124 | 67.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2358 | 367..419 | 121 | 69.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6503..6617 | 580..696 | 121 | 57.3 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3300..3381 | 335..417 | 116 | 63.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1097..1173 | 335..417 | 113 | 63.9 | Plus |
BO12267.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:14 Download gff for
BO12267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14866-RB | 232..1368 | 17..1153 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:10 Download gff for
BO12267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14866-RB | 232..1365 | 17..1152 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:53 Download gff for
BO12267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14866-RA | 476..1609 | 17..1152 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:14 Download gff for
BO12267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14866-RB | 232..1365 | 17..1150 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:56 Download gff for
BO12267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14866-RA | 476..1609 | 17..1152 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:56 Download gff for
BO12267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15316946..15317438 | 17..509 | 100 | -> | Plus |
3R | 15317495..15318135 | 510..1152 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:53 Download gff for
BO12267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11142668..11143160 | 17..509 | 100 | -> | Plus |
arm_3R | 11143217..11143857 | 510..1152 | 99 | | Plus |
BO12267.pep Sequence
Translation from 16 to 1168
> BO12267.pep
MGADMGINGPLSYHSSAYKRPGNNIYITRRIGEAVELEPHLRKPVESQSP
IVNPQFRPMTNQMLHQQHQQMQQQQQQQQLQQRQQPGFLQQLFGIGGSGG
GGGSGTQQQQHVRPVPLQQQQVQQIAQQHPQQQHLVGGQPTTFRAVSEND
LYLLGAIEKLVYRVDYLESRVRRSEQLIYYLMAGNNQKEVKDPCPANFTR
ISDNCYYINSQQQVNWKTANSACKGLNSHLAEFEKVSENEEIMAYLLNQP
THRGRDYWLGGLNPGLLWIWSNSAKPVNPNMNLTSIAMAQKGENSTAANL
VDSSEQAAEEATGEDVLNNTVQIEGKGRCLRLSYNAGKHSYVYYGQECTS
RHYYICEHEDKTLDNKIKKITRELKLFEASFLDH
BO12267.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:25:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14866-PA | 378 | CG14866-PA | 1..378 | 1..378 | 2006 | 100 | Plus |
CG14866-PB | 455 | CG14866-PB | 78..455 | 1..378 | 2006 | 100 | Plus |