Clone BO12267 Report

Search the DGRC for BO12267

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:122
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptCG14866-RA
Protein status:BO12267.pep:
Sequenced Size:1168

Clone Sequence Records

BO12267.5prime Sequence

877 bp (800 high quality bases) assembled on 2006-04-20

> BO12267.5prime
GAAGTTATCAGTCGACATGGGCGCGGACATGGGCATCAATGGACCGCTCA
GCTATCACTCGTCCGCCTACAAGCGACCCGGCAACAATATCTACATCACC
AGGAGAATTGGCGAGGCGGTGGAACTAGAGCCGCATCTGCGAAAGCCCGT
GGAGAGCCAGAGTCCCATTGTGAATCCTCAGTTCCGACCCATGACCAATC
AAATGTTGCACCAGCAACACCAACAGATGCAGCAACAACAGCAACAGCAA
CAGTTGCAGCAACGCCAGCAACCGGGTTTCCTGCAGCAGCTCTTTGGCAT
AGGTGGCAGTGGTGGTGGTGGTGGTAGCGGTACCCAGCAACAGCAACATG
TGCGACCAGTGCCGCTGCAACAGCAGCAAGTGCAACAGATAGCGCAGCAA
CACCCGCAACAGCAACATCTTGTGGGCGGTCAGCCGACCACATTCCGAGC
TGTCTCCGAAAATGATCTTTATCTCTTGGGAGCCATTGAAAAGTTGGTGT
ATCGAGTGGATTACCTGGAGAGTCGCGTGCGGCGCTCGGAGCAGCTGATC
TACTATCTGATGGCCGGAAACAATCAGAAGGAGGTGAAGGATCCCTGTCC
CGCGAACTTCACGCGCATCAGCGACAACTGCTACTACATCAACAGCCAGC
AGCAGGTGAACTGGAAGACGGCAAACTCTGCCTGCAAGGGTCTAAACTCC
CACCTGGCCGAGTTCGAGAAGGTCTCGGAGAATGAGGAGATCATGGCCTA
TCTGCTGAATCAGCCGACGCATCGTGGTCGCGATTACTGGCTGGGCGGTC
TCAATCCTGGCCTCCTCTGGATCTGGTCCAATTCGGCTAAACCCGTGAAT
CCCAACATGAATCTCACATCCATTGCG

BO12267.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG14866-PA 1137 CG14866-RA 1..861 17..877 4255 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:17:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG14866-RB 1687 CG14866-RB 404..1264 17..877 4275 99.8 Plus
CG14866-RA 1759 CG14866-RA 476..1336 17..877 4275 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:17:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15316946..15317438 17..509 2465 100 Plus
3R 32079331 3R 15317494..15317862 509..877 1815 99.5 Plus
Blast to na_te.dros performed 2015-02-02 11:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6757..6923 208..377 248 62.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6938 229..434 235 59.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2483..2686 208..420 199 58.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2622..2691 209..278 179 72.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6782..6864 335..414 174 71.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6740..6824 335..419 173 67.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2409 326..419 168 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2391 335..419 166 68.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6761..6845 335..419 164 65.9 Plus
roo 9092 roo DM_ROO 9092bp 1079..1164 335..420 160 65.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..6881 335..419 156 68.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2376..2463 335..419 153 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2302..2376 348..419 151 70.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6797 352..419 150 70.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2787..2861 335..412 140 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6776 362..419 130 72.4 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3259..3336 333..416 127 65.5 Plus
roo 9092 roo DM_ROO 9092bp 1072..1130 361..419 124 67.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2358 367..419 121 69.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6503..6617 580..696 121 57.3 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3300..3381 335..417 116 63.5 Plus
roo 9092 roo DM_ROO 9092bp 1097..1173 335..417 113 63.9 Plus

BO12267.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:00 Download gff for BO12267.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14866-PA 1..861 17..877 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:45 Download gff for BO12267.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14866-PA 1..861 17..877 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:18:07 Download gff for BO12267.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14866-RA 476..1336 17..877 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:29:40 Download gff for BO12267.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14866-RA 476..1336 17..877 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:29:40 Download gff for BO12267.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15316946..15317438 17..509 100 -> Plus
3R 15317495..15317862 510..877 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:18:07 Download gff for BO12267.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11142668..11143160 17..509 100 -> Plus
arm_3R 11143217..11143584 510..877 99   Plus

BO12267.complete Sequence

1168 bp assembled on 2008-01-17

GenBank Submission: FJ638697

> BO12267.complete
GAAGTTATCAGTCGACATGGGCGCGGACATGGGCATCAATGGACCGCTCA
GCTATCACTCGTCCGCCTACAAGCGACCCGGCAACAATATCTACATCACC
AGGAGAATTGGCGAGGCGGTGGAACTAGAGCCGCATCTGCGAAAGCCCGT
GGAGAGCCAGAGTCCCATTGTGAATCCTCAGTTCCGACCCATGACCAATC
AAATGTTGCACCAGCAACACCAACAGATGCAGCAACAACAGCAACAGCAA
CAGTTGCAGCAACGCCAGCAACCGGGTTTCCTGCAGCAGCTCTTTGGCAT
AGGTGGCAGTGGTGGTGGTGGTGGTAGCGGTACCCAGCAACAGCAACATG
TGCGACCAGTGCCGCTGCAACAGCAGCAAGTGCAACAGATAGCGCAGCAA
CACCCGCAACAGCAACATCTTGTGGGCGGTCAGCCGACCACATTCCGAGC
TGTCTCCGAAAATGATCTTTATCTCTTGGGAGCCATTGAAAAGTTGGTGT
ATCGAGTGGATTACCTGGAGAGTCGCGTGCGGCGCTCGGAGCAGCTGATC
TACTATCTGATGGCCGGAAACAATCAGAAGGAGGTGAAGGATCCCTGTCC
CGCGAACTTCACGCGCATCAGCGACAACTGCTACTACATCAACAGCCAGC
AGCAGGTGAACTGGAAGACGGCAAACTCTGCCTGCAAGGGTCTAAACTCC
CACCTGGCCGAGTTCGAGAAGGTCTCGGAGAATGAGGAGATCATGGCCTA
TCTGCTGAATCAGCCGACGCATCGTGGTCGCGATTACTGGCTGGGCGGTC
TCAATCCTGGCCTCCTCTGGATCTGGTCCAATTCGGCTAAGCCGGTGAAT
CCCAACATGAATCTCACATCCATTGCGATGGCCCAGAAGGGGGAGAACTC
GACGGCCGCCAATCTGGTGGACAGTTCGGAGCAGGCGGCAGAGGAGGCGA
CCGGCGAGGATGTGCTGAACAACACGGTGCAAATAGAGGGCAAGGGTCGC
TGCCTACGGCTAAGTTACAATGCCGGAAAGCACAGCTATGTGTACTACGG
ACAGGAGTGCACCTCGCGGCACTACTACATCTGCGAGCACGAGGACAAGA
CGCTGGACAACAAGATCAAGAAGATCACCCGCGAGCTGAAGCTGTTCGAG
GCAAGCTTTCTAGACCAT

BO12267.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG14866-RB 1368 CG14866-PB 232..1365 17..1150 5670 100 Plus
CG14866-RA 1137 CG14866-PA 1..1134 17..1150 5670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:36:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG14866-RB 1687 CG14866-RB 404..1537 17..1150 5670 100 Plus
CG14866-RA 1759 CG14866-RA 476..1609 17..1150 5670 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:36:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15317494..15318135 509..1150 3210 100 Plus
3R 32079331 3R 15316946..15317438 17..509 2465 100 Plus
Blast to na_te.dros performed 2014-11-27 14:36:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6757..6923 208..377 248 62.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6938 229..434 235 59.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2483..2686 208..420 199 58.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2622..2691 209..278 179 72.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6782..6864 335..414 174 71.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6740..6824 335..419 173 67.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2409 326..419 168 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2391 335..419 166 68.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6761..6845 335..419 164 65.9 Plus
roo 9092 roo DM_ROO 9092bp 1079..1164 335..420 160 65.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..6881 335..419 156 68.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2376..2463 335..419 153 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2302..2376 348..419 151 70.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6797 352..419 150 70.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2787..2861 335..412 140 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6776 362..419 130 72.4 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3259..3336 333..416 127 65.5 Plus
roo 9092 roo DM_ROO 9092bp 1072..1130 361..419 124 67.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2358 367..419 121 69.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6503..6617 580..696 121 57.3 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3300..3381 335..417 116 63.5 Plus
roo 9092 roo DM_ROO 9092bp 1097..1173 335..417 113 63.9 Plus

BO12267.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:14 Download gff for BO12267.complete
Subject Subject Range Query Range Percent Splice Strand
CG14866-RB 232..1368 17..1153 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:10 Download gff for BO12267.complete
Subject Subject Range Query Range Percent Splice Strand
CG14866-RB 232..1365 17..1152 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:53 Download gff for BO12267.complete
Subject Subject Range Query Range Percent Splice Strand
CG14866-RA 476..1609 17..1152 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:14 Download gff for BO12267.complete
Subject Subject Range Query Range Percent Splice Strand
CG14866-RB 232..1365 17..1150 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:56 Download gff for BO12267.complete
Subject Subject Range Query Range Percent Splice Strand
CG14866-RA 476..1609 17..1152 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:56 Download gff for BO12267.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15316946..15317438 17..509 100 -> Plus
3R 15317495..15318135 510..1152 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:53 Download gff for BO12267.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11142668..11143160 17..509 100 -> Plus
arm_3R 11143217..11143857 510..1152 99   Plus

BO12267.pep Sequence

Translation from 16 to 1168

> BO12267.pep
MGADMGINGPLSYHSSAYKRPGNNIYITRRIGEAVELEPHLRKPVESQSP
IVNPQFRPMTNQMLHQQHQQMQQQQQQQQLQQRQQPGFLQQLFGIGGSGG
GGGSGTQQQQHVRPVPLQQQQVQQIAQQHPQQQHLVGGQPTTFRAVSEND
LYLLGAIEKLVYRVDYLESRVRRSEQLIYYLMAGNNQKEVKDPCPANFTR
ISDNCYYINSQQQVNWKTANSACKGLNSHLAEFEKVSENEEIMAYLLNQP
THRGRDYWLGGLNPGLLWIWSNSAKPVNPNMNLTSIAMAQKGENSTAANL
VDSSEQAAEEATGEDVLNNTVQIEGKGRCLRLSYNAGKHSYVYYGQECTS
RHYYICEHEDKTLDNKIKKITRELKLFEASFLDH

BO12267.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:25:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG14866-PA 378 CG14866-PA 1..378 1..378 2006 100 Plus
CG14866-PB 455 CG14866-PB 78..455 1..378 2006 100 Plus