Clone Sequence Records
BO12272.3prime Sequence
575 bp (574 high quality bases) assembled on 2006-04-20
> BO12272.3prime
ATGGTCTAGAAAGCTTGCGAACAAGTATGGGGCGGGAGCGAACTTGGGGG
CCACAGCCAGAGGCGCTGGGACTGGAGCAGCCAGGGGAGCGGCGAAGGGT
CCGAATCCGAACTTGGCTGGTGCGGCGAAGGCAACAGGCGCCGGAGCAGG
GGCGAAGCCCAGAGGAGCAGCCACCGGAGCGGGAGCGGCGAAGGCAACCT
TGGCGGGAGCAGCAAAGGCCACCGGAGCAGGAGCAGCAGCCACTGGCAGA
GGAGCAGGAGCGGCAAAGGCCACTGGAGCGGGAGCAGCAACTGGAACGGG
CAGGGGAGCGGGAAGGGGAGCAGCGAAGGCCACTGGAGCTGGAGCAGGAG
CCACTGGGTATGCCACGGCGTGGTTGATGCGGTGGGCATTGAAGCTGGAG
GCATATGGAGCCACCACTCCGGCGGTAGCCACAGGAGCAGCCAGGGGAGC
TGCGAAGGCAGGAGCAAGTGGAGCAGCCAGTGGAGCCGGAGCATGGAAAG
GAAGGAGACCAGCCTGAGCAGAGGCCACGCAGAGGGCAACGAGCACAATC
TTGGCGAACATGTCGACTGATAACT
BO12272.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13049-PB | 672 | CG13049-RB | 127..665 | 561..23 | 2695 | 100 | Minus |
CG13049-PA | 546 | CG13049-RA | 1..539 | 561..23 | 2695 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:56:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13049-RA | 736 | CG13049-RA | 65..607 | 561..19 | 2700 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:56:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16281261..16281786 | 19..544 | 2615 | 99.8 | Plus |
Blast to na_te.dros performed 2015-02-06 12:56:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2758..2872 | 253..370 | 115 | 56.8 | Plus |
BO12272.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:07 Download gff for
BO12272.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13049-PB | 127..672 | 15..561 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:56 Download gff for
BO12272.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13049-PA | 1..546 | 15..561 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:05:46 Download gff for
BO12272.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13049-RA | 65..611 | 14..561 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:45:15 Download gff for
BO12272.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13049-RA | 65..611 | 14..561 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:45:15 Download gff for
BO12272.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16281257..16281785 | 14..543 | 99 | <- | Plus |
3L | 16281849..16281866 | 544..561 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:05:46 Download gff for
BO12272.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16274357..16274885 | 14..543 | 99 | <- | Plus |
arm_3L | 16274949..16274966 | 544..561 | 100 | | Plus |
BO12272.5prime Sequence
575 bp (574 high quality bases) assembled on 2006-04-20
> BO12272.5prime
GAAGTTATCAGTCGACATGTTCGCCAAGATTGTGCTCGTTGCCCTCTGCG
TGGCCTCTGCTCAGGCTGGTCTCCTTCCTTTCCATGCTCCGGCTCCACTG
GCTGCTCCACTTGCTCCTGCCTTCGCAGCTCCCCTGGCTGCTCCTGTGGC
TACCGCCGGAGTGGTGGCTCCATATGCCTCCAGCTTCAATGCCCACCGCA
TCAACCACGCCGTGGCATACCCAGTGGCTCCTGCTCCAGCTCCAGTGGCC
TTCGCTGCTCCCCTTCCCGCTCCCCTGCCCGTTCCAGTTGCTGCTCCCGC
TCCAGTGGCCTTTGCCGCTCCTGCTCCTCTGCCAGTGGCTGCTGCTCCTG
CTCCGGTGGCCTTTGCTGCTCCCGCCAAGGTTGCCTTCGCCGCTCCCGCT
CCGGTGGCTGCTCCTCTGGGCTTCGCCCCTGCTCCGGCGCCTGTTGCCTT
CGCCGCACCAGCCAAGTTCGGATTCGGACCCTTCGCCGCTCCCCTGGCTG
CTCCAGTCCCAGCGCCTCTGGCTGTGGCCCCCAAGTTCGCTCCCGCCCCA
TACTTCTTCGCAAGCTTTCTAGACC
BO12272.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13049-PB | 672 | CG13049-RB | 127..669 | 17..559 | 2715 | 100 | Plus |
CG13049-PA | 546 | CG13049-RA | 1..543 | 17..559 | 2715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:10:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13049-RA | 736 | CG13049-RA | 65..607 | 17..559 | 2715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:10:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16281261..16281786 | 559..34 | 2630 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 10:10:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2758..2872 | 325..208 | 115 | 56.8 | Minus |
BO12272.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:08 Download gff for
BO12272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13049-PB | 127..672 | 17..563 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:57 Download gff for
BO12272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13049-PA | 1..546 | 17..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:53:05 Download gff for
BO12272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13049-RA | 65..611 | 17..564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:16:33 Download gff for
BO12272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13049-RA | 65..611 | 17..564 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:16:33 Download gff for
BO12272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16281257..16281785 | 35..564 | 99 | <- | Minus |
3L | 16281849..16281866 | 17..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:53:05 Download gff for
BO12272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16274357..16274885 | 35..564 | 99 | <- | Minus |
arm_3L | 16274949..16274966 | 17..34 | 100 | | Minus |
BO12272.complete Sequence
577 bp assembled on 2007-06-22
GenBank Submission: FJ632388
> BO12272.complete
GAAGTTATCAGTCGACATGTTCGCCAAGATTGTGCTCGTTGCCCTCTGCG
TGGCCTCTGCTCAGGCTGGTCTCCTTCCTTTCCATGCTCCGGCTCCACTG
GCTGCTCCACTTGCTCCTGCCTTCGCAGCTCCCCTGGCTGCTCCTGTGGC
TACCGCCGGAGTGGTGGCTCCATATGCCTCCAGCTTCAATGCCCACCGCA
TCAACCACGCCGTGGCATACCCAGTGGCTCCTGCTCCAGCTCCAGTGGCC
TTCGCTGCTCCCCTTCCCGCTCCCCTGCCCGTTCCAGTTGCTGCTCCCGC
TCCAGTGGCCTTTGCCGCTCCTGCTCCTCTGCCAGTGGCTGCTGCTCCTG
CTCCGGTGGCCTTTGCTGCTCCCGCCAAGGTTGCCTTCGCCGCTCCCGCT
CCGGTGGCTGCTCCTCTGGGCTTCGCCCCTGCTCCGGCGCCTGTTGCCTT
CGCCGCACCAGCCAAGTTCGGATTCGGACCCTTCGCCGCTCCCCTGGCTG
CTCCAGTCCCAGCGCCTCTGGCTGTGGCCCCCAAGTTCGCTCCCGCCCCA
TACTTCTTCGCAAGCTTTCTAGACCAT
BO12272.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:04:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13049-RA | 546 | CG13049-PA | 1..543 | 17..559 | 2715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13049-RA | 736 | CG13049-RA | 65..607 | 17..559 | 2715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16281261..16281786 | 559..34 | 2630 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 08:04:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2758..2872 | 325..208 | 115 | 56.8 | Minus |
BO12272.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:26 Download gff for
BO12272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13049-RA | 1..546 | 17..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:25:05 Download gff for
BO12272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13049-RB | 127..673 | 17..564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:28:47 Download gff for
BO12272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13049-RA | 70..607 | 22..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:26 Download gff for
BO12272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13049-RA | 61..607 | 17..564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:10:26 Download gff for
BO12272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13049-RA | 70..607 | 22..561 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:10:26 Download gff for
BO12272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16281259..16281785 | 35..561 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:28:47 Download gff for
BO12272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16274359..16274885 | 35..561 | 99 | <- | Minus |
BO12272.pep Sequence
Translation from 16 to 577
> BO12272.pep
MFAKIVLVALCVASAQAGLLPFHAPAPLAAPLAPAFAAPLAAPVATAGVV
APYASSFNAHRINHAVAYPVAPAPAPVAFAAPLPAPLPVPVAAPAPVAFA
APAPLPVAAAPAPVAFAAPAKVAFAAPAPVAAPLGFAPAPAPVAFAAPAK
FGFGPFAAPLAAPVPAPLAVAPKFAPAPYFFASFLDH
BO12272.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:20:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13049-PA | 181 | CG13049-PA | 1..181 | 1..181 | 924 | 100 | Plus |
CG10953-PB | 278 | CG10953-PB | 62..241 | 21..178 | 241 | 40.9 | Plus |
CG10953-PA | 278 | CG10953-PA | 62..241 | 21..178 | 241 | 40.9 | Plus |
CG31626-PB | 285 | CG31626-PB | 53..248 | 12..182 | 241 | 41.4 | Plus |
CG31626-PA | 285 | CG31626-PA | 53..248 | 12..182 | 241 | 41.4 | Plus |
CG10953-PB | 278 | CG10953-PB | 29..156 | 24..178 | 228 | 36.8 | Plus |
CG10953-PB | 278 | CG10953-PB | 53..227 | 24..178 | 228 | 40.7 | Plus |
CG10953-PA | 278 | CG10953-PA | 29..156 | 24..178 | 228 | 36.8 | Plus |
CG10953-PA | 278 | CG10953-PA | 53..227 | 24..178 | 228 | 40.7 | Plus |
CG10953-PB | 278 | CG10953-PB | 103..244 | 21..168 | 223 | 41.8 | Plus |
CG10953-PA | 278 | CG10953-PA | 103..244 | 21..168 | 223 | 41.8 | Plus |
CG31626-PB | 285 | CG31626-PB | 74..257 | 13..182 | 223 | 40.5 | Plus |
CG10953-PB | 278 | CG10953-PB | 28..137 | 72..178 | 216 | 48.3 | Plus |
CG10953-PA | 278 | CG10953-PA | 28..137 | 72..178 | 216 | 48.3 | Plus |
CG31626-PB | 285 | CG31626-PB | 41..203 | 24..182 | 211 | 41.1 | Plus |
CG31626-PB | 285 | CG31626-PB | 114..267 | 12..172 | 211 | 41.6 | Plus |
CG31626-PB | 285 | CG31626-PB | 140..268 | 20..149 | 199 | 47.5 | Plus |
CG31626-PB | 285 | CG31626-PB | 39..160 | 69..182 | 185 | 47.6 | Plus |
CG31626-PB | 285 | CG31626-PB | 160..281 | 13..121 | 168 | 44.4 | Plus |
CG31626-PB | 285 | CG31626-PB | 32..139 | 72..186 | 155 | 41.9 | Plus |
CG10953-PB | 278 | CG10953-PB | 25..105 | 99..178 | 153 | 49.4 | Plus |
CG10953-PA | 278 | CG10953-PA | 25..105 | 99..178 | 153 | 49.4 | Plus |