Clone BO12272 Report

Search the DGRC for BO12272

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:122
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG13049-RA
Protein status:BO12272.pep:
Sequenced Size:577

Clone Sequence Records

BO12272.3prime Sequence

575 bp (574 high quality bases) assembled on 2006-04-20

> BO12272.3prime
ATGGTCTAGAAAGCTTGCGAACAAGTATGGGGCGGGAGCGAACTTGGGGG
CCACAGCCAGAGGCGCTGGGACTGGAGCAGCCAGGGGAGCGGCGAAGGGT
CCGAATCCGAACTTGGCTGGTGCGGCGAAGGCAACAGGCGCCGGAGCAGG
GGCGAAGCCCAGAGGAGCAGCCACCGGAGCGGGAGCGGCGAAGGCAACCT
TGGCGGGAGCAGCAAAGGCCACCGGAGCAGGAGCAGCAGCCACTGGCAGA
GGAGCAGGAGCGGCAAAGGCCACTGGAGCGGGAGCAGCAACTGGAACGGG
CAGGGGAGCGGGAAGGGGAGCAGCGAAGGCCACTGGAGCTGGAGCAGGAG
CCACTGGGTATGCCACGGCGTGGTTGATGCGGTGGGCATTGAAGCTGGAG
GCATATGGAGCCACCACTCCGGCGGTAGCCACAGGAGCAGCCAGGGGAGC
TGCGAAGGCAGGAGCAAGTGGAGCAGCCAGTGGAGCCGGAGCATGGAAAG
GAAGGAGACCAGCCTGAGCAGAGGCCACGCAGAGGGCAACGAGCACAATC
TTGGCGAACATGTCGACTGATAACT

BO12272.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG13049-PB 672 CG13049-RB 127..665 561..23 2695 100 Minus
CG13049-PA 546 CG13049-RA 1..539 561..23 2695 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG13049-RA 736 CG13049-RA 65..607 561..19 2700 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16281261..16281786 19..544 2615 99.8 Plus
Blast to na_te.dros performed 2015-02-06 12:56:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2758..2872 253..370 115 56.8 Plus

BO12272.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:07 Download gff for BO12272.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13049-PB 127..672 15..561 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:56 Download gff for BO12272.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13049-PA 1..546 15..561 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:05:46 Download gff for BO12272.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13049-RA 65..611 14..561 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:45:15 Download gff for BO12272.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13049-RA 65..611 14..561 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:45:15 Download gff for BO12272.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16281257..16281785 14..543 99 <- Plus
3L 16281849..16281866 544..561 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:05:46 Download gff for BO12272.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16274357..16274885 14..543 99 <- Plus
arm_3L 16274949..16274966 544..561 100   Plus

BO12272.5prime Sequence

575 bp (574 high quality bases) assembled on 2006-04-20

> BO12272.5prime
GAAGTTATCAGTCGACATGTTCGCCAAGATTGTGCTCGTTGCCCTCTGCG
TGGCCTCTGCTCAGGCTGGTCTCCTTCCTTTCCATGCTCCGGCTCCACTG
GCTGCTCCACTTGCTCCTGCCTTCGCAGCTCCCCTGGCTGCTCCTGTGGC
TACCGCCGGAGTGGTGGCTCCATATGCCTCCAGCTTCAATGCCCACCGCA
TCAACCACGCCGTGGCATACCCAGTGGCTCCTGCTCCAGCTCCAGTGGCC
TTCGCTGCTCCCCTTCCCGCTCCCCTGCCCGTTCCAGTTGCTGCTCCCGC
TCCAGTGGCCTTTGCCGCTCCTGCTCCTCTGCCAGTGGCTGCTGCTCCTG
CTCCGGTGGCCTTTGCTGCTCCCGCCAAGGTTGCCTTCGCCGCTCCCGCT
CCGGTGGCTGCTCCTCTGGGCTTCGCCCCTGCTCCGGCGCCTGTTGCCTT
CGCCGCACCAGCCAAGTTCGGATTCGGACCCTTCGCCGCTCCCCTGGCTG
CTCCAGTCCCAGCGCCTCTGGCTGTGGCCCCCAAGTTCGCTCCCGCCCCA
TACTTCTTCGCAAGCTTTCTAGACC

BO12272.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG13049-PB 672 CG13049-RB 127..669 17..559 2715 100 Plus
CG13049-PA 546 CG13049-RA 1..543 17..559 2715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13049-RA 736 CG13049-RA 65..607 17..559 2715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16281261..16281786 559..34 2630 100 Minus
Blast to na_te.dros performed 2015-02-11 10:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2758..2872 325..208 115 56.8 Minus

BO12272.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:08 Download gff for BO12272.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13049-PB 127..672 17..563 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:57 Download gff for BO12272.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13049-PA 1..546 17..563 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:53:05 Download gff for BO12272.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13049-RA 65..611 17..564 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:16:33 Download gff for BO12272.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13049-RA 65..611 17..564 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:16:33 Download gff for BO12272.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16281257..16281785 35..564 99 <- Minus
3L 16281849..16281866 17..34 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:53:05 Download gff for BO12272.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16274357..16274885 35..564 99 <- Minus
arm_3L 16274949..16274966 17..34 100   Minus

BO12272.complete Sequence

577 bp assembled on 2007-06-22

GenBank Submission: FJ632388

> BO12272.complete
GAAGTTATCAGTCGACATGTTCGCCAAGATTGTGCTCGTTGCCCTCTGCG
TGGCCTCTGCTCAGGCTGGTCTCCTTCCTTTCCATGCTCCGGCTCCACTG
GCTGCTCCACTTGCTCCTGCCTTCGCAGCTCCCCTGGCTGCTCCTGTGGC
TACCGCCGGAGTGGTGGCTCCATATGCCTCCAGCTTCAATGCCCACCGCA
TCAACCACGCCGTGGCATACCCAGTGGCTCCTGCTCCAGCTCCAGTGGCC
TTCGCTGCTCCCCTTCCCGCTCCCCTGCCCGTTCCAGTTGCTGCTCCCGC
TCCAGTGGCCTTTGCCGCTCCTGCTCCTCTGCCAGTGGCTGCTGCTCCTG
CTCCGGTGGCCTTTGCTGCTCCCGCCAAGGTTGCCTTCGCCGCTCCCGCT
CCGGTGGCTGCTCCTCTGGGCTTCGCCCCTGCTCCGGCGCCTGTTGCCTT
CGCCGCACCAGCCAAGTTCGGATTCGGACCCTTCGCCGCTCCCCTGGCTG
CTCCAGTCCCAGCGCCTCTGGCTGTGGCCCCCAAGTTCGCTCCCGCCCCA
TACTTCTTCGCAAGCTTTCTAGACCAT

BO12272.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG13049-RA 546 CG13049-PA 1..543 17..559 2715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG13049-RA 736 CG13049-RA 65..607 17..559 2715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16281261..16281786 559..34 2630 100 Minus
Blast to na_te.dros performed 2014-11-27 08:04:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2758..2872 325..208 115 56.8 Minus

BO12272.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:26 Download gff for BO12272.complete
Subject Subject Range Query Range Percent Splice Strand
CG13049-RA 1..546 17..563 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:25:05 Download gff for BO12272.complete
Subject Subject Range Query Range Percent Splice Strand
CG13049-RB 127..673 17..564 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:28:47 Download gff for BO12272.complete
Subject Subject Range Query Range Percent Splice Strand
CG13049-RA 70..607 22..561 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:26 Download gff for BO12272.complete
Subject Subject Range Query Range Percent Splice Strand
CG13049-RA 61..607 17..564 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:10:26 Download gff for BO12272.complete
Subject Subject Range Query Range Percent Splice Strand
CG13049-RA 70..607 22..561 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:10:26 Download gff for BO12272.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16281259..16281785 35..561 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:28:47 Download gff for BO12272.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16274359..16274885 35..561 99 <- Minus

BO12272.pep Sequence

Translation from 16 to 577

> BO12272.pep
MFAKIVLVALCVASAQAGLLPFHAPAPLAAPLAPAFAAPLAAPVATAGVV
APYASSFNAHRINHAVAYPVAPAPAPVAFAAPLPAPLPVPVAAPAPVAFA
APAPLPVAAAPAPVAFAAPAKVAFAAPAPVAAPLGFAPAPAPVAFAAPAK
FGFGPFAAPLAAPVPAPLAVAPKFAPAPYFFASFLDH

BO12272.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:20:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG13049-PA 181 CG13049-PA 1..181 1..181 924 100 Plus
CG10953-PB 278 CG10953-PB 62..241 21..178 241 40.9 Plus
CG10953-PA 278 CG10953-PA 62..241 21..178 241 40.9 Plus
CG31626-PB 285 CG31626-PB 53..248 12..182 241 41.4 Plus
CG31626-PA 285 CG31626-PA 53..248 12..182 241 41.4 Plus
CG10953-PB 278 CG10953-PB 29..156 24..178 228 36.8 Plus
CG10953-PB 278 CG10953-PB 53..227 24..178 228 40.7 Plus
CG10953-PA 278 CG10953-PA 29..156 24..178 228 36.8 Plus
CG10953-PA 278 CG10953-PA 53..227 24..178 228 40.7 Plus
CG10953-PB 278 CG10953-PB 103..244 21..168 223 41.8 Plus
CG10953-PA 278 CG10953-PA 103..244 21..168 223 41.8 Plus
CG31626-PB 285 CG31626-PB 74..257 13..182 223 40.5 Plus
CG10953-PB 278 CG10953-PB 28..137 72..178 216 48.3 Plus
CG10953-PA 278 CG10953-PA 28..137 72..178 216 48.3 Plus
CG31626-PB 285 CG31626-PB 41..203 24..182 211 41.1 Plus
CG31626-PB 285 CG31626-PB 114..267 12..172 211 41.6 Plus
CG31626-PB 285 CG31626-PB 140..268 20..149 199 47.5 Plus
CG31626-PB 285 CG31626-PB 39..160 69..182 185 47.6 Plus
CG31626-PB 285 CG31626-PB 160..281 13..121 168 44.4 Plus
CG31626-PB 285 CG31626-PB 32..139 72..186 155 41.9 Plus
CG10953-PB 278 CG10953-PB 25..105 99..178 153 49.4 Plus
CG10953-PA 278 CG10953-PA 25..105 99..178 153 49.4 Plus