Clone BO12274 Report

Search the DGRC for BO12274

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:122
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptCG15695-RA
Protein status:BO12274.pep:
Sequenced Size:2209

Clone Sequence Records

BO12274.5prime Sequence

883 bp (796 high quality bases) assembled on 2006-04-20

> BO12274.5prime
GAAGTTATCAGTCGACATGACGAAAATTAAATATGAACTTGTTCCAAGTG
AGGAGCAAGAACCAAACGAAAGTAAAAAACCTTTAAATTGGATAGTGAAA
ATATTATTTGTTGTCTTGGCGCTTTTTACCCTGGTCATTTATACCTTGAG
CGGCGCCAATAATCCGCTCAAGAACAATGCAGATCCATTTTCCCCTTGGA
AATCCATGAGACTCCTTGCGGGATCAGGTTGGACCAATAATCCCGGAGAT
CTGTCGAGTCCTTTGAATGTTAAGCATACAACTCGTAGTCTGAGTACAGA
GAAGCAATCTACGGAAGCAATCTATAATAAACTAGCAGATACTGAGAGCA
CCACCGAGGATCAAACTGAGATAACTACCGTAGACCACACGGATGAAGTC
GTAGAAAGTAGCACTTCATCACCAGCTACTGGAGCATCGAAAACAGAGAC
TTTATATGCACTGGAAGGAAATGGAAAGAAATACTTCGTCCATAGCCCGC
AGTGCCAAATGAGCCACCCAAATCCGTTTGCCAATAACATTCAGCACATC
TACAAGAAACATTCCTATATAGTGTGTGATAAAAGTCGCGACATGATCAC
AGTCAACTACAATGTAACTGACAGCACGTACAGGCTGCACAAGAACGAGA
ACTCCACCTGCTGCTTCAAGCAGATCCTTCGAGCAGGAACTTCAGCCAAT
GCGGATCATAAGTACAAGCTGGGTCCTTGCGTAGAATTTCACCAGGACTT
CTTGGTGCCAACAGAAGTGAGTGCCATGATCACCTATTGCCGTCGGCCTT
CATTCGATAAGGTGTCGCAAAAGGATGCCTTCAGTTTTGTGCATCCGCGA
AAGGATCAGATCGAAAATCCCACAACGCCGCAT

BO12274.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG15695-PA 2178 CG15695-RA 1..867 17..883 4310 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG15695-RA 2723 CG15695-RA 194..1060 17..883 4320 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20842333..20843034 17..718 3510 100 Plus
3R 32079331 3R 20843085..20843250 718..883 815 99.4 Plus
Blast to na_te.dros performed on 2015-02-10 21:33:30 has no hits.

BO12274.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:12 Download gff for BO12274.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15695-PA 1..867 17..883 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:05:01 Download gff for BO12274.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15695-PA 1..867 17..883 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:46:46 Download gff for BO12274.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15695-RA 194..1060 17..883 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:33 Download gff for BO12274.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15695-RA 194..1060 17..883 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:33 Download gff for BO12274.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20842333..20843033 17..717 100 -> Plus
3R 20843085..20843250 718..883 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:46:46 Download gff for BO12274.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16668807..16668972 718..883 99   Plus
arm_3R 16668055..16668755 17..717 100 -> Plus

BO12274.complete Sequence

2209 bp assembled on 2008-01-17

GenBank Submission: FJ632390

> BO12274.complete
GAAGTTATCAGTCGACATGACGAAAATTAAATATGAACTTGTTCCAAGTG
AGGAGCAAGAACCAAACGAAAGTAAAAAACCTTTAAATTGGATAGTGAAA
ATATTATTTGTTGTCTTGGCGCTTTTTACCCTGGTCATTTATACCTTGAG
CGGCGCCAATAATCCGCTCAAGAACAATGCAGATCCATTTTCCCCTTGGA
AATCCATGAGACTCCTTGCGGGATCAGGTTGGACCAATAATCCCGGAGAT
CTGTCGAGTCCTTTGAATGTTAAGCATACAACTCGTAGTCTGAGTACAGA
GAAGCAATCTACGGAAGCAATCTATAATAAACTAGCAGATACTGAGAGCA
CCACCGAGGATCAAACTGAGATAACTACCGTAGACCACACGGATGAAGTC
GTAGAAAGTAGCACTTCATCACCAGCTACTGGAGCATCGAAAACAGAGAC
TTTATATGCACTGGAAGGAAATGGAAAGAAATACTTCGTCCATAGCCCGC
AGTGCCAAATGAGCCACCCAAATCCGTTTGCCAATAACATTCAGCACATC
TACAAGAAACATTCCTATATAGTGTGTGATAAAAGTCGCGACATGATCAC
AGTCAACTACAATGTAACTGACAGCACGTACAGGCTGCACAAGAACGAGA
ACTCCACCTGCTGCTTCAAGCAGATCCTTCGAGCAGGAACTTCAGCCAAT
GCGGATCATAAGTACAAGCTGGGTCCTTGCGTAGAATTTCACCAGGACTT
CTTGGTGCCAACAGAAGTGAGTGCCATGATCACCTATTGCCGTCGGCCTC
CATTCGATAAGGTGTCGCAAAAGGATGCCTTCAGTTTTGTGCATCCGCGA
AAGGATCAGATCGAAAATCCCACAACGCCGCATAGAAGAAGGCCCAGCGT
TTTGCTGTGGGGCATTGATTCCATTTCCCGAATGAATCTTGAGCTTACGA
TGCCCCGTATGTACGAGTACTTGAACAATCAACATTGGTTTGAGCTTCAG
GGATACAACAAGATGGGCGATAATACGTTTCCGAATCTGATGGCGGTTCT
CACGGGATTTAACAAGACCTACGCGAACGCACGTTGCCATCCTGAGAAGG
TGCGTGGCCTGGATGCCTGTCCGTTTATTTGGAAGGACTTCAAGGACAAG
GGATACACAACTGCCTTCGCCGAGGACTGGAGCAAGTTCTCCACGTTTGA
CTACTCTAGCAGGGGCTTTTTCAATCCTCCGACCGACGTGTACGGCAGAC
CACTGGTCCTGGCCGTGGAGAAGGAGCTAACGATATTACAACGGGGTCAG
ATGCCCTACTGCTTGGGCCGCAAGCCGGCTTCCGAATACATCTATGACAT
GGGCGTGCAGTTCACCATGGTCAACCGGAACAGCACCTTCTTCGGAATGT
TTTGGACCAACACATTCAGCCACAACGACTTCTCTATGCCCTCCGCCATG
GATGAGAGGATGGTGAAGTACATGCGGACGTTGGACAAGAACGGCATAAT
GGATAACACCATCATCATCTTCTTCAGCGATCATGGATCCAGGTTTGGAC
CATTGAGGAATTTGGACAGCGGTTTCGTGGAAGAACGCTTGCCCTTCATA
TATATCCGTGTGCCGCGTTGGATTCGTGAGAAGTACCCGAAGCTCCTGCG
CAACCTGCAGATGAACAAGAACCGCCTGACGTCGCCATACGATATCCATG
CCACCCTGAGGCACATCCTGGAGCTAGACACTCCCAAGGATAAGCTACCT
CGTCCCGATGGCTGCTCCAGCTGTCACAGCGTTTTCGAGGAGGTGGACTG
GTCGAGGAATTGCTCACAGGCCGGGATCGAGGATCACTGGTGCGCATGCA
ACAGCTTCTCCGACGTGCCCACAACGGATCCCAGCGCCAGGAGCATGTCC
ACCCAGCTGGTGGAGGCCATTAACGAATATGTGGCCAGCAAAAAAGGAAC
GAAACGGTGCAGTCGCTTGAAACTGAACCGAATATCCTCAGTCCAGAGAA
GAGGAAACTCCAATCGGTATCTCATCCAGCTGATGGCCCAGCCGGGTGAC
GCTCTCTTCGAGGCCACCGTGGATTGGGATGCCAGTGCCCAAAGGATTCC
CGCTCAGATGCCCAGCATCAGTCGGTTAGACACGTACGCCGCAAAGTCAA
GATGCTCGTCGGTTAAGGAGACCAAAAAGTACTGCATCTGCGCAAGCTTT
CTAGACCAT

BO12274.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:24:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG15695-RA 2178 CG15695-PA 1..2175 17..2191 10875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG15695-RA 2723 CG15695-RA 194..2368 17..2191 10875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:24:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20843446..20844626 1011..2191 5905 100 Plus
3R 32079331 3R 20842333..20843034 17..718 3510 100 Plus
3R 32079331 3R 20843085..20843379 718..1012 1475 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:24:51 has no hits.

BO12274.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:17 Download gff for BO12274.complete
Subject Subject Range Query Range Percent Splice Strand
CG15695-RA 1..2178 17..2194 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:59 Download gff for BO12274.complete
Subject Subject Range Query Range Percent Splice Strand
CG15695-RA 192..2366 17..2193 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:10 Download gff for BO12274.complete
Subject Subject Range Query Range Percent Splice Strand
CG15695-RA 194..2368 17..2193 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:17 Download gff for BO12274.complete
Subject Subject Range Query Range Percent Splice Strand
CG15695-RA 192..2372 17..2199 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:56 Download gff for BO12274.complete
Subject Subject Range Query Range Percent Splice Strand
CG15695-RA 194..2368 17..2193 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:56 Download gff for BO12274.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20842333..20843033 17..717 100 -> Plus
3R 20843085..20843379 718..1012 100 -> Plus
3R 20843448..20844626 1013..2193 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:10 Download gff for BO12274.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16668055..16668755 17..717 100 -> Plus
arm_3R 16668807..16669101 718..1012 100 -> Plus
arm_3R 16669170..16670348 1013..2193 99   Plus

BO12274.pep Sequence

Translation from 16 to 2209

> BO12274.pep
MTKIKYELVPSEEQEPNESKKPLNWIVKILFVVLALFTLVIYTLSGANNP
LKNNADPFSPWKSMRLLAGSGWTNNPGDLSSPLNVKHTTRSLSTEKQSTE
AIYNKLADTESTTEDQTEITTVDHTDEVVESSTSSPATGASKTETLYALE
GNGKKYFVHSPQCQMSHPNPFANNIQHIYKKHSYIVCDKSRDMITVNYNV
TDSTYRLHKNENSTCCFKQILRAGTSANADHKYKLGPCVEFHQDFLVPTE
VSAMITYCRRPPFDKVSQKDAFSFVHPRKDQIENPTTPHRRRPSVLLWGI
DSISRMNLELTMPRMYEYLNNQHWFELQGYNKMGDNTFPNLMAVLTGFNK
TYANARCHPEKVRGLDACPFIWKDFKDKGYTTAFAEDWSKFSTFDYSSRG
FFNPPTDVYGRPLVLAVEKELTILQRGQMPYCLGRKPASEYIYDMGVQFT
MVNRNSTFFGMFWTNTFSHNDFSMPSAMDERMVKYMRTLDKNGIMDNTII
IFFSDHGSRFGPLRNLDSGFVEERLPFIYIRVPRWIREKYPKLLRNLQMN
KNRLTSPYDIHATLRHILELDTPKDKLPRPDGCSSCHSVFEEVDWSRNCS
QAGIEDHWCACNSFSDVPTTDPSARSMSTQLVEAINEYVASKKGTKRCSR
LKLNRISSVQRRGNSNRYLIQLMAQPGDALFEATVDWDASAQRIPAQMPS
ISRLDTYAAKSRCSSVKETKKYCICASFLDH

BO12274.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:25:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG15695-PA 725 CG15695-PA 1..725 1..725 3895 100 Plus
CG9988-PA 668 CG9988-PA 66..661 156..725 1044 37.4 Plus
CG7120-PG 701 CG7120-PG 104..696 154..725 1042 37.2 Plus
CG7120-PF 701 CG7120-PF 104..696 154..725 1042 37.2 Plus
CG7120-PE 686 CG7120-PE 91..681 156..725 1039 37.1 Plus