Clone BO12275 Report

Search the DGRC for BO12275

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:122
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCpr56F-RA
Protein status:BO12275.pep: Imported from assembly
Sequenced Size:686

Clone Sequence Records

BO12275.3prime Sequence

684 bp (683 high quality bases) assembled on 2006-04-20

> BO12275.3prime
ATGGTCTAGAAAGCTTTGCGTAGCCGTTGAATTTGCCCTGCTGCGCGTTG
CTATCATAACCGCCACCGTTGCGACCATTGCCATTGCCGTTTCCGTTGCC
ATTGCCGACCTGCTCGTACCGAATGGTTGGGCGGTATCCATTCTGGTCGG
CCTCGTACTCAACAATCTGTTTGCGTCCATCGGGCAGCAGGACGTAGTAG
CGGCCCACAGCAAGATCACCATCGCGGGACTCCATGTGGCCGAAGTCATT
GCCCGACTCGTAGTCCTGTACGTCGTACTTGAACTCGTACTTGGCCGGTC
CATACTGCTCCTCATCCCGTTGTCCGTAGCCGTTGCCGTTGCCATTACCG
CCGCCATAGCCGCCGTTTCCGTTTCCGTTTCCGCCCTTGAAGATGGCACC
AGTCAGCGCTGGAGCACCATATTGACCCTGGGGAGGAGCGATGGGGGCGC
CATAGCTGTTGCTGGGCGCTCCTCCATTGCCACCGGCCCGCTGGGGTGGC
AAGTAGTTGCTCGACGGCGACTGGTAGCCCTGCGTGGGCGGCAGGTAGTT
GTTGGACGGCGCCTGAGGCGACTGATTGGGGGGCAGGTACTGGTTCTGGG
GAACTGGTGGTTCCGCATGGGTCCAGGCAGCCAGGCACACGAGCAGGGCA
ATGGATGTAAAAGCCTTCATGTCGACTGATAACT

BO12275.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG9036-PA 654 CG9036-RA 1..651 670..20 3255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:17:05
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr56F-RA 1259 CG9036-RA 113..763 670..20 3255 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:16:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20288867..20289513 20..666 3235 100 Plus
Blast to na_te.dros performed on 2015-02-08 13:17:01 has no hits.

BO12275.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:13 Download gff for BO12275.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9036-PA 1..654 16..670 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:05:03 Download gff for BO12275.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9036-PA 1..654 16..670 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:44:31 Download gff for BO12275.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr56F-RA 107..766 16..678 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:27:11 Download gff for BO12275.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr56F-RA 107..766 16..678 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:27:11 Download gff for BO12275.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20288864..20289513 16..666 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:44:31 Download gff for BO12275.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16176369..16177018 16..666 99   Plus

BO12275.5prime Sequence

684 bp (683 high quality bases) assembled on 2006-04-20

> BO12275.5prime
GAAGTTATCAGTCGACATGAAGGCTTTTACATCCATTGCCCTGCTCGTGT
GCCTGGCTGCCTGGACCCATGCGGAACCACCAGTTCCCCAGAACCAGTAC
CTGCCCCCCAATCAGTCGCCTCAGGCGCCGTCCAACAACTACCTGCCGCC
CACGCAGGGCTACCAGTCGCCGTCGAGCAACTACTTGCCACCCCAGCGGG
CCGGTGGCAATGGAGGAGCGCCCAGCAACAGCTATGGCGCCCCCATCGCT
CCTCCCCAGGGTCAATATGGTGCTCCAGCGCTGACTGGTGCCATCTTCAA
GGGCGGAAACGGAAACGGAAACGGCGGCTATGGCGGCGGTAATGGCAACG
GCAACGGCTACGGACAACGGGATGAGGAGCAGTATGGACCGGCCAAGTAC
GAGTTCAAGTACGACGTACAGGACTACGAGTCGGGCAATGACTTCGGCCA
CATGGAGTCCCGCGATGGTGATCTTGCTGTGGGCCGCTACTACGTCCTGC
TGCCCGATGGACGCAAACAGATTGTTGAGTACGAGGCCGACCAGAATGGA
TACCGCCCAACCATTCGGTACGAGCAGGTCGGCAATGGCAACGGAAACGG
CAATGGCAATGGTCGCAACGGTGGCGGTTATGATAGCAACGCGCAGCAGG
GCAAATTCAACGGCTACGCAAAGCTTTCTAGACC

BO12275.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG9036-PA 654 CG9036-RA 1..651 17..667 3255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:33:13
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr56F-RA 1259 CG9036-RA 113..763 17..667 3255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:33:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20288867..20289513 667..21 3235 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:33:10 has no hits.

BO12275.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:13 Download gff for BO12275.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9036-PA 1..654 17..671 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:05:04 Download gff for BO12275.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9036-PA 1..654 17..671 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:46:44 Download gff for BO12275.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr56F-RA 107..766 9..671 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:59 Download gff for BO12275.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr56F-RA 107..766 9..671 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:59 Download gff for BO12275.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20288864..20289513 21..671 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:46:44 Download gff for BO12275.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16176369..16177018 21..671 99   Minus

BO12275.complete Sequence

686 bp assembled on 2011-06-28

> BO12275.complete
GAAGTTATCAGTCGACATGAAGGCTTTTACATCCATTGCCCTGCTCGTGT
GCCTGGCTGCCTGGACCCATGCGGAACCACCAGTTCCCCAGAACCAGTAC
CTGCCCCCCAATCAGTCGCCTCAGGCGCCGTCCAACAACTACCTGCCGCC
CACGCAGGGCTACCAGTCGCCGTCGAGCAACTACTTGCCACCCCAGCGGG
CCGGTGGCAATGGAGGAGCGCCCAGCAACAGCTATGGCGCCCCCATCGCT
CCTCCCCAGGGTCAATATGGTGCTCCAGCGCTGACTGGTGCCATCTTCAA
GGGCGGAAACGGAAACGGAAACGGCGGCTATGGCGGCGGTAATGGCAACG
GCAACGGCTACGGACAACGGGATGAGGAGCAGTATGGACCGGCCAAGTAC
GAGTTCAAGTACGACGTACAGGACTACGAGTCGGGCAATGACTTCGGCCA
CATGGAGTCCCGCGATGGTGATCTTGCTGTGGGCCGCTACTACGTCCTGC
TGCCCGATGGACGCAAACAGATTGTTGAGTACGAGGCCGACCAGAATGGA
TACCGCCCAACCATTCGGTACGAGCAGGTCGGCAATGGCAACGGAAACGG
CAATGGCAATGGTCGCAACGGTGGCGGTTATGATAGCAACGCGCAGCAGG
GCAAATTCAACGGCTACGCAAAGCTTTCTAGACCAT

BO12275.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr56F-RA 654 CG9036-PA 1..651 17..667 3255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:18:19
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr56F-RA 1259 CG9036-RA 113..763 17..667 3255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:18:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20288867..20289513 667..21 3235 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:18:17 has no hits.

BO12275.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:30 Download gff for BO12275.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr56F-RA 111..761 17..669 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:57:27 Download gff for BO12275.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr56F-RA 113..763 17..669 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:16:01 Download gff for BO12275.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr56F-RA 113..763 17..669 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:16:01 Download gff for BO12275.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20288865..20289513 17..669 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:57:27 Download gff for BO12275.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16176370..16177018 17..669 99   Minus

BO12275.pep Sequence

Translation from 16 to 685

> BO12275.pep
MKAFTSIALLVCLAAWTHAEPPVPQNQYLPPNQSPQAPSNNYLPPTQGYQ
SPSSNYLPPQRAGGNGGAPSNSYGAPIAPPQGQYGAPALTGAIFKGGNGN
GNGGYGGGNGNGNGYGQRDEEQYGPAKYEFKYDVQDYESGNDFGHMESRD
GDLAVGRYYVLLPDGRKQIVEYEADQNGYRPTIRYEQVGNGNGNGNGNGR
NGGGYDSNAQQGKFNGYAKLSRP

BO12275.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr56F-PA 217 CG9036-PA 1..217 1..217 1206 100 Plus
resilin-PA 620 CG15920-PA 248..460 24..218 398 44.5 Plus
resilin-PB 575 CG15920-PB 214..415 24..218 214 34.9 Plus
resilin-PA 620 CG15920-PA 7..264 7..216 208 32.7 Plus
resilin-PB 575 CG15920-PB 7..264 7..216 208 32.7 Plus
Cpr50Cb-PA 178 CG6305-PA 5..175 2..203 202 30.8 Plus
Cpr65Az-PA 239 CG12330-PA 31..187 14..181 183 28.8 Plus
resilin-PA 620 CG15920-PA 183..345 38..214 159 31.6 Plus