Clone Sequence Records
BO12275.3prime Sequence
684 bp (683 high quality bases) assembled on 2006-04-20
> BO12275.3prime
ATGGTCTAGAAAGCTTTGCGTAGCCGTTGAATTTGCCCTGCTGCGCGTTG
CTATCATAACCGCCACCGTTGCGACCATTGCCATTGCCGTTTCCGTTGCC
ATTGCCGACCTGCTCGTACCGAATGGTTGGGCGGTATCCATTCTGGTCGG
CCTCGTACTCAACAATCTGTTTGCGTCCATCGGGCAGCAGGACGTAGTAG
CGGCCCACAGCAAGATCACCATCGCGGGACTCCATGTGGCCGAAGTCATT
GCCCGACTCGTAGTCCTGTACGTCGTACTTGAACTCGTACTTGGCCGGTC
CATACTGCTCCTCATCCCGTTGTCCGTAGCCGTTGCCGTTGCCATTACCG
CCGCCATAGCCGCCGTTTCCGTTTCCGTTTCCGCCCTTGAAGATGGCACC
AGTCAGCGCTGGAGCACCATATTGACCCTGGGGAGGAGCGATGGGGGCGC
CATAGCTGTTGCTGGGCGCTCCTCCATTGCCACCGGCCCGCTGGGGTGGC
AAGTAGTTGCTCGACGGCGACTGGTAGCCCTGCGTGGGCGGCAGGTAGTT
GTTGGACGGCGCCTGAGGCGACTGATTGGGGGGCAGGTACTGGTTCTGGG
GAACTGGTGGTTCCGCATGGGTCCAGGCAGCCAGGCACACGAGCAGGGCA
ATGGATGTAAAAGCCTTCATGTCGACTGATAACT
BO12275.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9036-PA | 654 | CG9036-RA | 1..651 | 670..20 | 3255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:17:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr56F-RA | 1259 | CG9036-RA | 113..763 | 670..20 | 3255 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:16:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20288867..20289513 | 20..666 | 3235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 13:17:01 has no hits.
BO12275.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:13 Download gff for
BO12275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9036-PA | 1..654 | 16..670 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:05:03 Download gff for
BO12275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9036-PA | 1..654 | 16..670 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:44:31 Download gff for
BO12275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr56F-RA | 107..766 | 16..678 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:27:11 Download gff for
BO12275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr56F-RA | 107..766 | 16..678 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:27:11 Download gff for
BO12275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20288864..20289513 | 16..666 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:44:31 Download gff for
BO12275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16176369..16177018 | 16..666 | 99 | | Plus |
BO12275.5prime Sequence
684 bp (683 high quality bases) assembled on 2006-04-20
> BO12275.5prime
GAAGTTATCAGTCGACATGAAGGCTTTTACATCCATTGCCCTGCTCGTGT
GCCTGGCTGCCTGGACCCATGCGGAACCACCAGTTCCCCAGAACCAGTAC
CTGCCCCCCAATCAGTCGCCTCAGGCGCCGTCCAACAACTACCTGCCGCC
CACGCAGGGCTACCAGTCGCCGTCGAGCAACTACTTGCCACCCCAGCGGG
CCGGTGGCAATGGAGGAGCGCCCAGCAACAGCTATGGCGCCCCCATCGCT
CCTCCCCAGGGTCAATATGGTGCTCCAGCGCTGACTGGTGCCATCTTCAA
GGGCGGAAACGGAAACGGAAACGGCGGCTATGGCGGCGGTAATGGCAACG
GCAACGGCTACGGACAACGGGATGAGGAGCAGTATGGACCGGCCAAGTAC
GAGTTCAAGTACGACGTACAGGACTACGAGTCGGGCAATGACTTCGGCCA
CATGGAGTCCCGCGATGGTGATCTTGCTGTGGGCCGCTACTACGTCCTGC
TGCCCGATGGACGCAAACAGATTGTTGAGTACGAGGCCGACCAGAATGGA
TACCGCCCAACCATTCGGTACGAGCAGGTCGGCAATGGCAACGGAAACGG
CAATGGCAATGGTCGCAACGGTGGCGGTTATGATAGCAACGCGCAGCAGG
GCAAATTCAACGGCTACGCAAAGCTTTCTAGACC
BO12275.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9036-PA | 654 | CG9036-RA | 1..651 | 17..667 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:33:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr56F-RA | 1259 | CG9036-RA | 113..763 | 17..667 | 3255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:33:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20288867..20289513 | 667..21 | 3235 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:33:10 has no hits.
BO12275.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:13 Download gff for
BO12275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9036-PA | 1..654 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:05:04 Download gff for
BO12275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9036-PA | 1..654 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:46:44 Download gff for
BO12275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr56F-RA | 107..766 | 9..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:59 Download gff for
BO12275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr56F-RA | 107..766 | 9..671 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:59 Download gff for
BO12275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20288864..20289513 | 21..671 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:46:44 Download gff for
BO12275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16176369..16177018 | 21..671 | 99 | | Minus |
BO12275.complete Sequence
686 bp assembled on 2011-06-28
> BO12275.complete
GAAGTTATCAGTCGACATGAAGGCTTTTACATCCATTGCCCTGCTCGTGT
GCCTGGCTGCCTGGACCCATGCGGAACCACCAGTTCCCCAGAACCAGTAC
CTGCCCCCCAATCAGTCGCCTCAGGCGCCGTCCAACAACTACCTGCCGCC
CACGCAGGGCTACCAGTCGCCGTCGAGCAACTACTTGCCACCCCAGCGGG
CCGGTGGCAATGGAGGAGCGCCCAGCAACAGCTATGGCGCCCCCATCGCT
CCTCCCCAGGGTCAATATGGTGCTCCAGCGCTGACTGGTGCCATCTTCAA
GGGCGGAAACGGAAACGGAAACGGCGGCTATGGCGGCGGTAATGGCAACG
GCAACGGCTACGGACAACGGGATGAGGAGCAGTATGGACCGGCCAAGTAC
GAGTTCAAGTACGACGTACAGGACTACGAGTCGGGCAATGACTTCGGCCA
CATGGAGTCCCGCGATGGTGATCTTGCTGTGGGCCGCTACTACGTCCTGC
TGCCCGATGGACGCAAACAGATTGTTGAGTACGAGGCCGACCAGAATGGA
TACCGCCCAACCATTCGGTACGAGCAGGTCGGCAATGGCAACGGAAACGG
CAATGGCAATGGTCGCAACGGTGGCGGTTATGATAGCAACGCGCAGCAGG
GCAAATTCAACGGCTACGCAAAGCTTTCTAGACCAT
BO12275.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:18:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr56F-RA | 654 | CG9036-PA | 1..651 | 17..667 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:18:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr56F-RA | 1259 | CG9036-RA | 113..763 | 17..667 | 3255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:18:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20288867..20289513 | 667..21 | 3235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:18:17 has no hits.
BO12275.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:30 Download gff for
BO12275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr56F-RA | 111..761 | 17..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:57:27 Download gff for
BO12275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr56F-RA | 113..763 | 17..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:16:01 Download gff for
BO12275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr56F-RA | 113..763 | 17..669 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:16:01 Download gff for
BO12275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20288865..20289513 | 17..669 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:57:27 Download gff for
BO12275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16176370..16177018 | 17..669 | 99 | | Minus |
BO12275.pep Sequence
Translation from 16 to 685
> BO12275.pep
MKAFTSIALLVCLAAWTHAEPPVPQNQYLPPNQSPQAPSNNYLPPTQGYQ
SPSSNYLPPQRAGGNGGAPSNSYGAPIAPPQGQYGAPALTGAIFKGGNGN
GNGGYGGGNGNGNGYGQRDEEQYGPAKYEFKYDVQDYESGNDFGHMESRD
GDLAVGRYYVLLPDGRKQIVEYEADQNGYRPTIRYEQVGNGNGNGNGNGR
NGGGYDSNAQQGKFNGYAKLSRP
BO12275.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:51:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr56F-PA | 217 | CG9036-PA | 1..217 | 1..217 | 1206 | 100 | Plus |
resilin-PA | 620 | CG15920-PA | 248..460 | 24..218 | 398 | 44.5 | Plus |
resilin-PB | 575 | CG15920-PB | 214..415 | 24..218 | 214 | 34.9 | Plus |
resilin-PA | 620 | CG15920-PA | 7..264 | 7..216 | 208 | 32.7 | Plus |
resilin-PB | 575 | CG15920-PB | 7..264 | 7..216 | 208 | 32.7 | Plus |
Cpr50Cb-PA | 178 | CG6305-PA | 5..175 | 2..203 | 202 | 30.8 | Plus |
Cpr65Az-PA | 239 | CG12330-PA | 31..187 | 14..181 | 183 | 28.8 | Plus |
resilin-PA | 620 | CG15920-PA | 183..345 | 38..214 | 159 | 31.6 | Plus |