Clone BO12276 Report

Search the DGRC for BO12276

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:122
Well:76
Vector:pDNR-Dual
Associated Gene/Transcriptbwa-RA
Protein status:BO12276.pep: validated full length
Sequenced Size:883

Clone Sequence Records

BO12276.3prime Sequence

734 bp (673 high quality bases) assembled on 2006-04-20

> BO12276.3prime
ATGGTCTAGAAAGCTTGCGATGGTGTTGCGCAGAGCCTTACCTGGATTCC
GGATCGAAATGAAGGGTATCCCGAACTCGAACTCGTTCTTTGGCCAGTAC
TTCAGCAGCGGCTGTCGCTGGGGCAGCTCCGATTCCACGTAGAAGTAGGC
GAAAAGCACCAGCACCGTGTAGGCGGCTATAAAAATGAATATGTGCCAGA
AGCCGTGCAGGTATGGAAAATTGATCGAGGACCAGGCCTCGCAGAAGATC
CGGTCATTGATCCAGCAGAACACCGCAACAGCCCAGACGGTCGTCGATCG
GATGCCCAGGCGGTAGACCCTCTGGTCACTAACTCTCTGCAGCTCTGTGT
AGAGCATTACCATGGTCGGCACACTCATGAACATGAGAACAAAGGCGTTA
ACAATGGGCTTCCACCACGACAAGCCCGTCGCAGCAATCGCCGACAAGAG
CATGAGCCAACTGAAGGTTTTGCGATCGTTTTTCACGAACTTGGGATAGT
ATCGCTTCGGATAGAAGAGCGAAAAGGCCGCCATGAAGACCCAGAGTATG
GCCAGTTCGTCCAGCAGCTGGCCAATCAGACTCAAAGTGGCATGGAAGTA
CATCGAACTCAGGCCAACCACGATGAGCAGCACCCAGATGACGTGGATTC
CGGGCGTCACAAAGCGTCCGTACTCCTTGAAGAGCATTATAAGGACGGGC
GGCAGTAGGATGAACAGGAAGTTGCTAAACGTGT

BO12276.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG13969-PA 852 bwa-RA 134..849 734..19 3580 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:24:43
Subject Length Description Subject Range Query Range Score Percent Strand
bwa-RA 2269 CG13969-RA 504..1219 734..19 3580 100 Minus
bwa-RB 1538 CG13969-RB 504..1196 734..42 3465 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:24:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20072352..20072669 336..19 1590 100 Minus
2L 23513712 2L 20069047..20069304 730..473 1290 100 Minus
2L 23513712 2L 20069376..20069514 473..335 695 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:24:41 has no hits.

BO12276.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:14 Download gff for BO12276.3prime
Subject Subject Range Query Range Percent Splice Strand
bwa-PA 134..852 15..734 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:05:05 Download gff for BO12276.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13969-PA 134..852 15..734 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:54:51 Download gff for BO12276.3prime
Subject Subject Range Query Range Percent Splice Strand
bwa-RA 504..1223 14..734 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 21:09:36 Download gff for BO12276.3prime
Subject Subject Range Query Range Percent Splice Strand
bwa-RA 504..1223 14..734 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 21:09:36 Download gff for BO12276.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20069044..20069304 473..734 99 -> Minus
2L 20069377..20069514 335..472 100 -> Minus
2L 20072354..20072673 14..334 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:54:51 Download gff for BO12276.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20069044..20069304 473..734 99 -> Minus
arm_2L 20069377..20069514 335..472 100 -> Minus
arm_2L 20072354..20072673 14..334 99   Minus

BO12276.5prime Sequence

671 bp (589 high quality bases) assembled on 2006-04-20

> BO12276.5prime
GAAGTTATCAGTCGACATGGGCGGGATGGGGGGCGGCGGGCTGCTGGACA
TCTACGCCATGGCCTGGGAGCACCTAAGACCCGGAAGCTCGCCCGTCGAC
TGGTGCGAAGGCAACTACTTGATTTCGTCCAACATCGCCGAGTTCGTGAA
CACGTTTAGCAACTTCCTGTTCATCCTACTGCCGCCCGTCCTTATAATGC
TCTTCAAGGAGTACGGACGCTTTGTGACGCCCGGAATCCACGTCATCTGG
GTGCTGCTCATCGTGGTTGGCCTGAGTTCGATGTACTTCCATGCCACTTT
GAGTCTGATTGGCCAGCTGCTGGACGAACTGGCCATACTCTGGGTCTTCA
TGGCGGCCTTTTCGCTCTTCTATCCGAAGCGATACTATCCCAAGTTCGTG
AAAAACGATCGCAAAACCTTCAGTTGGCTCATGCTCTTGTCGGCGATTGC
TGCGACGGGCTTGTCGTGGTGGAAGCCCATTGTTAACGCCTTTGTTCTCA
TGTTCATGAGTGTGCCGACCATGGTAATGCTCTACACAGAGCTGCAGAGA
GTTAGTGACCAGAGGGTCTACCGCCTGGGCATCCGATCGACGACCGTCTG
GGCTGTTGCGGTGTTCTGCTGGATCAATGACCGGATCTTCTGCGAAGCCT
GGTCCTCGATCAATTTTCATA

BO12276.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG13969-PA 852 bwa-RA 1..652 17..668 3235 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
bwa-RB 1538 CG13969-RB 371..1022 17..668 3245 99.8 Plus
bwa-RA 2269 CG13969-RA 371..1022 17..668 3245 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:03:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20069047..20069304 154..411 1290 100 Plus
2L 23513712 2L 20069376..20069514 411..549 695 100 Plus
2L 23513712 2L 20066761..20066898 17..154 690 100 Plus
2L 23513712 2L 20072352..20072472 548..668 590 99.2 Plus
Blast to na_te.dros performed on 2015-02-11 13:03:43 has no hits.

BO12276.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:15 Download gff for BO12276.5prime
Subject Subject Range Query Range Percent Splice Strand
bwa-PA 1..655 17..670 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:05:06 Download gff for BO12276.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13969-PA 1..655 17..670 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:17:20 Download gff for BO12276.5prime
Subject Subject Range Query Range Percent Splice Strand
bwa-RA 369..1025 14..670 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:29:15 Download gff for BO12276.5prime
Subject Subject Range Query Range Percent Splice Strand
bwa-RA 369..1025 14..670 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:29:15 Download gff for BO12276.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20066759..20066898 14..154 99 -> Plus
2L 20069048..20069304 155..411 100 -> Plus
2L 20069377..20069514 412..549 100 -> Plus
2L 20072354..20072475 550..670 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:17:20 Download gff for BO12276.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20066759..20066898 14..154 99 -> Plus
arm_2L 20069048..20069304 155..411 100 -> Plus
arm_2L 20069377..20069514 412..549 100 -> Plus
arm_2L 20072354..20072475 550..670 98   Plus

BO12276.complete Sequence

883 bp assembled on 2006-10-11

GenBank Submission: FJ632391

> BO12276.complete
GAAGTTATCAGTCGACATGGGCGGGATGGGGGGCGGCGGGCTGCTGGACA
TCTACGCCATGGCCTGGGAGCACCTAAGACCCGGAAGCTCGCCCGTCGAC
TGGTGCGAAGGCAACTACTTGATTTCGTCCAACATCGCCGAGTTCGTGAA
CACGTTTAGCAACTTCCTGTTCATCCTACTGCCGCCCGTCCTTATAATGC
TCTTCAAGGAGTACGGACGCTTTGTGACGCCCGGAATCCACGTCATCTGG
GTGCTGCTCATCGTGGTTGGCCTGAGTTCGATGTACTTCCATGCCACTTT
GAGTCTGATTGGCCAGCTGCTGGACGAACTGGCCATACTCTGGGTCTTCA
TGGCGGCCTTTTCGCTCTTCTATCCGAAGCGATACTATCCCAAGTTCGTG
AAAAACGATCGCAAAACCTTCAGTTGGCTCATGCTCTTGTCGGCGATTGC
TGCGACGGGCTTGTCGTGGTGGAAGCCCATTGTTAACGCCTTTGTTCTCA
TGTTCATGAGTGTGCCGACCATGGTAATGCTCTACACAGAGCTGCAGAGA
GTTAGTGACCAGAGGGTCTACCGCCTGGGCATCCGATCGACGACCGTCTG
GGCTGTTGCGGTGTTCTGCTGGATCAATGACCGGATCTTCTGCGAGGCCT
GGTCCTCGATCAATTTTCCATACCTGCACGGCTTCTGGCACATATTCATT
TTTATAGCCGCCTACACGGTGCTGGTGCTTTTCGCCTACTTCTACGTGGA
ATCGGAGCTGCCCCAGCGACAGCCGCTGCTGAAGTACTGGCCAAAGAACG
AGTTCGAGTTCGGGATACCCTTCATTTCGATCCGGAATCCAGGTAAGGCT
CTGCGCAACACCATCGCAAGCTTTCTAGACCAT

BO12276.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:12:28
Subject Length Description Subject Range Query Range Score Percent Strand
bwa-RA 852 CG13969-PA 1..849 17..865 4245 100 Plus
bwa-RB 903 CG13969-PB 1..826 17..842 4130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
bwa-RA 2269 CG13969-RA 371..1219 17..865 4245 100 Plus
bwa-RB 1538 CG13969-RB 371..1196 17..842 4130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:12:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20072352..20072669 548..865 1590 100 Plus
2L 23513712 2L 20069047..20069304 154..411 1290 100 Plus
2L 23513712 2L 20069376..20069514 411..549 695 100 Plus
2L 23513712 2L 20066761..20066898 17..154 690 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:12:27 has no hits.

BO12276.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:41 Download gff for BO12276.complete
Subject Subject Range Query Range Percent Splice Strand
bwa-RA 1..852 17..869 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:11 Download gff for BO12276.complete
Subject Subject Range Query Range Percent Splice Strand
bwa-RA 390..1244 14..870 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:50:20 Download gff for BO12276.complete
Subject Subject Range Query Range Percent Splice Strand
bwa-RA 371..1219 17..867 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:41 Download gff for BO12276.complete
Subject Subject Range Query Range Percent Splice Strand
bwa-RA 390..1244 14..870 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:54:17 Download gff for BO12276.complete
Subject Subject Range Query Range Percent Splice Strand
bwa-RA 371..1219 17..867 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:54:17 Download gff for BO12276.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20066761..20066898 17..154 100 -> Plus
2L 20072354..20072669 550..867 99   Plus
2L 20069048..20069304 155..411 100 -> Plus
2L 20069377..20069514 412..549 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:50:20 Download gff for BO12276.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20069048..20069304 155..411 100 -> Plus
arm_2L 20069377..20069514 412..549 100 -> Plus
arm_2L 20066761..20066898 17..154 100 -> Plus
arm_2L 20072354..20072669 550..867 99   Plus

BO12276.pep Sequence

Translation from 16 to 883

> BO12276.pep
MGGMGGGGLLDIYAMAWEHLRPGSSPVDWCEGNYLISSNIAEFVNTFSNF
LFILLPPVLIMLFKEYGRFVTPGIHVIWVLLIVVGLSSMYFHATLSLIGQ
LLDELAILWVFMAAFSLFYPKRYYPKFVKNDRKTFSWLMLLSAIAATGLS
WWKPIVNAFVLMFMSVPTMVMLYTELQRVSDQRVYRLGIRSTTVWAVAVF
CWINDRIFCEAWSSINFPYLHGFWHIFIFIAAYTVLVLFAYFYVESELPQ
RQPLLKYWPKNEFEFGIPFISIRNPGKALRNTIASFLDH

BO12276.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
bwa-PA 283 CG13969-PA 1..283 1..283 1515 100 Plus
bwa-PB 300 CG13969-PB 1..275 1..275 1476 100 Plus