Clone Sequence Records
BO12276.3prime Sequence
734 bp (673 high quality bases) assembled on 2006-04-20
> BO12276.3prime
ATGGTCTAGAAAGCTTGCGATGGTGTTGCGCAGAGCCTTACCTGGATTCC
GGATCGAAATGAAGGGTATCCCGAACTCGAACTCGTTCTTTGGCCAGTAC
TTCAGCAGCGGCTGTCGCTGGGGCAGCTCCGATTCCACGTAGAAGTAGGC
GAAAAGCACCAGCACCGTGTAGGCGGCTATAAAAATGAATATGTGCCAGA
AGCCGTGCAGGTATGGAAAATTGATCGAGGACCAGGCCTCGCAGAAGATC
CGGTCATTGATCCAGCAGAACACCGCAACAGCCCAGACGGTCGTCGATCG
GATGCCCAGGCGGTAGACCCTCTGGTCACTAACTCTCTGCAGCTCTGTGT
AGAGCATTACCATGGTCGGCACACTCATGAACATGAGAACAAAGGCGTTA
ACAATGGGCTTCCACCACGACAAGCCCGTCGCAGCAATCGCCGACAAGAG
CATGAGCCAACTGAAGGTTTTGCGATCGTTTTTCACGAACTTGGGATAGT
ATCGCTTCGGATAGAAGAGCGAAAAGGCCGCCATGAAGACCCAGAGTATG
GCCAGTTCGTCCAGCAGCTGGCCAATCAGACTCAAAGTGGCATGGAAGTA
CATCGAACTCAGGCCAACCACGATGAGCAGCACCCAGATGACGTGGATTC
CGGGCGTCACAAAGCGTCCGTACTCCTTGAAGAGCATTATAAGGACGGGC
GGCAGTAGGATGAACAGGAAGTTGCTAAACGTGT
BO12276.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13969-PA | 852 | bwa-RA | 134..849 | 734..19 | 3580 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:24:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bwa-RA | 2269 | CG13969-RA | 504..1219 | 734..19 | 3580 | 100 | Minus |
bwa-RB | 1538 | CG13969-RB | 504..1196 | 734..42 | 3465 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:24:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20072352..20072669 | 336..19 | 1590 | 100 | Minus |
2L | 23513712 | 2L | 20069047..20069304 | 730..473 | 1290 | 100 | Minus |
2L | 23513712 | 2L | 20069376..20069514 | 473..335 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:24:41 has no hits.
BO12276.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:14 Download gff for
BO12276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bwa-PA | 134..852 | 15..734 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:05:05 Download gff for
BO12276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13969-PA | 134..852 | 15..734 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:54:51 Download gff for
BO12276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bwa-RA | 504..1223 | 14..734 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 21:09:36 Download gff for
BO12276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bwa-RA | 504..1223 | 14..734 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 21:09:36 Download gff for
BO12276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20069044..20069304 | 473..734 | 99 | -> | Minus |
2L | 20069377..20069514 | 335..472 | 100 | -> | Minus |
2L | 20072354..20072673 | 14..334 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:54:51 Download gff for
BO12276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20069044..20069304 | 473..734 | 99 | -> | Minus |
arm_2L | 20069377..20069514 | 335..472 | 100 | -> | Minus |
arm_2L | 20072354..20072673 | 14..334 | 99 | | Minus |
BO12276.5prime Sequence
671 bp (589 high quality bases) assembled on 2006-04-20
> BO12276.5prime
GAAGTTATCAGTCGACATGGGCGGGATGGGGGGCGGCGGGCTGCTGGACA
TCTACGCCATGGCCTGGGAGCACCTAAGACCCGGAAGCTCGCCCGTCGAC
TGGTGCGAAGGCAACTACTTGATTTCGTCCAACATCGCCGAGTTCGTGAA
CACGTTTAGCAACTTCCTGTTCATCCTACTGCCGCCCGTCCTTATAATGC
TCTTCAAGGAGTACGGACGCTTTGTGACGCCCGGAATCCACGTCATCTGG
GTGCTGCTCATCGTGGTTGGCCTGAGTTCGATGTACTTCCATGCCACTTT
GAGTCTGATTGGCCAGCTGCTGGACGAACTGGCCATACTCTGGGTCTTCA
TGGCGGCCTTTTCGCTCTTCTATCCGAAGCGATACTATCCCAAGTTCGTG
AAAAACGATCGCAAAACCTTCAGTTGGCTCATGCTCTTGTCGGCGATTGC
TGCGACGGGCTTGTCGTGGTGGAAGCCCATTGTTAACGCCTTTGTTCTCA
TGTTCATGAGTGTGCCGACCATGGTAATGCTCTACACAGAGCTGCAGAGA
GTTAGTGACCAGAGGGTCTACCGCCTGGGCATCCGATCGACGACCGTCTG
GGCTGTTGCGGTGTTCTGCTGGATCAATGACCGGATCTTCTGCGAAGCCT
GGTCCTCGATCAATTTTCATA
BO12276.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:40:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13969-PA | 852 | bwa-RA | 1..652 | 17..668 | 3235 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:03:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bwa-RB | 1538 | CG13969-RB | 371..1022 | 17..668 | 3245 | 99.8 | Plus |
bwa-RA | 2269 | CG13969-RA | 371..1022 | 17..668 | 3245 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:03:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20069047..20069304 | 154..411 | 1290 | 100 | Plus |
2L | 23513712 | 2L | 20069376..20069514 | 411..549 | 695 | 100 | Plus |
2L | 23513712 | 2L | 20066761..20066898 | 17..154 | 690 | 100 | Plus |
2L | 23513712 | 2L | 20072352..20072472 | 548..668 | 590 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:03:43 has no hits.
BO12276.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:15 Download gff for
BO12276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bwa-PA | 1..655 | 17..670 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:05:06 Download gff for
BO12276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13969-PA | 1..655 | 17..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:17:20 Download gff for
BO12276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bwa-RA | 369..1025 | 14..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:29:15 Download gff for
BO12276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bwa-RA | 369..1025 | 14..670 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:29:15 Download gff for
BO12276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20066759..20066898 | 14..154 | 99 | -> | Plus |
2L | 20069048..20069304 | 155..411 | 100 | -> | Plus |
2L | 20069377..20069514 | 412..549 | 100 | -> | Plus |
2L | 20072354..20072475 | 550..670 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:17:20 Download gff for
BO12276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20066759..20066898 | 14..154 | 99 | -> | Plus |
arm_2L | 20069048..20069304 | 155..411 | 100 | -> | Plus |
arm_2L | 20069377..20069514 | 412..549 | 100 | -> | Plus |
arm_2L | 20072354..20072475 | 550..670 | 98 | | Plus |
BO12276.complete Sequence
883 bp assembled on 2006-10-11
GenBank Submission: FJ632391
> BO12276.complete
GAAGTTATCAGTCGACATGGGCGGGATGGGGGGCGGCGGGCTGCTGGACA
TCTACGCCATGGCCTGGGAGCACCTAAGACCCGGAAGCTCGCCCGTCGAC
TGGTGCGAAGGCAACTACTTGATTTCGTCCAACATCGCCGAGTTCGTGAA
CACGTTTAGCAACTTCCTGTTCATCCTACTGCCGCCCGTCCTTATAATGC
TCTTCAAGGAGTACGGACGCTTTGTGACGCCCGGAATCCACGTCATCTGG
GTGCTGCTCATCGTGGTTGGCCTGAGTTCGATGTACTTCCATGCCACTTT
GAGTCTGATTGGCCAGCTGCTGGACGAACTGGCCATACTCTGGGTCTTCA
TGGCGGCCTTTTCGCTCTTCTATCCGAAGCGATACTATCCCAAGTTCGTG
AAAAACGATCGCAAAACCTTCAGTTGGCTCATGCTCTTGTCGGCGATTGC
TGCGACGGGCTTGTCGTGGTGGAAGCCCATTGTTAACGCCTTTGTTCTCA
TGTTCATGAGTGTGCCGACCATGGTAATGCTCTACACAGAGCTGCAGAGA
GTTAGTGACCAGAGGGTCTACCGCCTGGGCATCCGATCGACGACCGTCTG
GGCTGTTGCGGTGTTCTGCTGGATCAATGACCGGATCTTCTGCGAGGCCT
GGTCCTCGATCAATTTTCCATACCTGCACGGCTTCTGGCACATATTCATT
TTTATAGCCGCCTACACGGTGCTGGTGCTTTTCGCCTACTTCTACGTGGA
ATCGGAGCTGCCCCAGCGACAGCCGCTGCTGAAGTACTGGCCAAAGAACG
AGTTCGAGTTCGGGATACCCTTCATTTCGATCCGGAATCCAGGTAAGGCT
CTGCGCAACACCATCGCAAGCTTTCTAGACCAT
BO12276.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:12:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bwa-RA | 852 | CG13969-PA | 1..849 | 17..865 | 4245 | 100 | Plus |
bwa-RB | 903 | CG13969-PB | 1..826 | 17..842 | 4130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:12:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bwa-RA | 2269 | CG13969-RA | 371..1219 | 17..865 | 4245 | 100 | Plus |
bwa-RB | 1538 | CG13969-RB | 371..1196 | 17..842 | 4130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:12:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20072352..20072669 | 548..865 | 1590 | 100 | Plus |
2L | 23513712 | 2L | 20069047..20069304 | 154..411 | 1290 | 100 | Plus |
2L | 23513712 | 2L | 20069376..20069514 | 411..549 | 695 | 100 | Plus |
2L | 23513712 | 2L | 20066761..20066898 | 17..154 | 690 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:12:27 has no hits.
BO12276.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:41 Download gff for
BO12276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bwa-RA | 1..852 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:11 Download gff for
BO12276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bwa-RA | 390..1244 | 14..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:50:20 Download gff for
BO12276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bwa-RA | 371..1219 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:41 Download gff for
BO12276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bwa-RA | 390..1244 | 14..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:54:17 Download gff for
BO12276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bwa-RA | 371..1219 | 17..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:54:17 Download gff for
BO12276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20066761..20066898 | 17..154 | 100 | -> | Plus |
2L | 20072354..20072669 | 550..867 | 99 | | Plus |
2L | 20069048..20069304 | 155..411 | 100 | -> | Plus |
2L | 20069377..20069514 | 412..549 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:50:20 Download gff for
BO12276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20069048..20069304 | 155..411 | 100 | -> | Plus |
arm_2L | 20069377..20069514 | 412..549 | 100 | -> | Plus |
arm_2L | 20066761..20066898 | 17..154 | 100 | -> | Plus |
arm_2L | 20072354..20072669 | 550..867 | 99 | | Plus |
BO12276.pep Sequence
Translation from 16 to 883
> BO12276.pep
MGGMGGGGLLDIYAMAWEHLRPGSSPVDWCEGNYLISSNIAEFVNTFSNF
LFILLPPVLIMLFKEYGRFVTPGIHVIWVLLIVVGLSSMYFHATLSLIGQ
LLDELAILWVFMAAFSLFYPKRYYPKFVKNDRKTFSWLMLLSAIAATGLS
WWKPIVNAFVLMFMSVPTMVMLYTELQRVSDQRVYRLGIRSTTVWAVAVF
CWINDRIFCEAWSSINFPYLHGFWHIFIFIAAYTVLVLFAYFYVESELPQ
RQPLLKYWPKNEFEFGIPFISIRNPGKALRNTIASFLDH
BO12276.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bwa-PA | 283 | CG13969-PA | 1..283 | 1..283 | 1515 | 100 | Plus |
bwa-PB | 300 | CG13969-PB | 1..275 | 1..275 | 1476 | 100 | Plus |