Clone Sequence Records
BO12287.3prime Sequence
865 bp (807 high quality bases) assembled on 2006-04-20
> BO12287.3prime
ATGGTCTAGAAAGCTTTGCGATGTCGACGATGTGGCCGGACAGCAGCAGA
GTTTTGCCATTGCCGATGGCGTAAAAGAACGGGTGATTGATGACCAGGGG
CAGGGCTCGTCGGAACAGATCCCCGAAGGAGAACGAGTCGTCGGCATTGC
CGCCATCCTCCTGTAGCTCCAGGAGACCACTCTGGACCACTGCTCCCAAG
GGTGGAGCCGAACTGGACAGGATGGAGCTGAAGACCTCGCTCAGGTGGAC
CTCCGATGTGAATAGTTTTGCCAGACCCAACTCCTCGAGCACGTGCTTCA
GGTCGGAGTGGACTAGCACTCTGAGCTTGGGCAGAGTGAGGGCCACCTTG
CGCTCCTCGAGCTGGGACCTTAGCTGGTGGAGATCGGACTGCGCCAGCTT
CCTCTCAAGTTGGGCCAGGCCATCAGGCCGATTGGGAAATACAATGAGCA
TTCGGAGGTCTGCAGTGGCGAAGGGCACCTCAATGAGCTGGGCGTCCAGA
GCGGGCACTTCAGCGTACCTGTAGCGGTGCTGTCCGAACATGGCATCCAC
CAGCCTGGGGCGATTTCCCCCGGCAAAGAAGTTGATGCTCTGCGTCTCGG
TAGGATCGAAGGCCCAAGCCCAAGGGGCTCGGAAGGTGACTCCCGAGACG
TGTAAAAAGGGCGTGTTGTGCTCGGCCAAGGACTCGAGTTGGGGGGCACT
GACGAGCTCCCCCAGGCTGAAGTTGCTGCGGCTAAGGAAGGCGTAGTTGA
TATCCTGGGCCGCGTTCGACGCACTTTCCCACGACAAGCGGTGGCAGCCG
ACGCCCATTCGGGCGGCCAAGGTCTCGAAATTCTTGCGGAAGTTGAAGGT
GAAACGCTGCTGTGC
BO12287.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1859-PA | 1224 | Spn43Ad-RA | 412..1221 | 829..20 | 4050 | 100 | Minus |
| CG1859-PA | 1224 | Spn43Ad-RA | 376..407 | 865..834 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:44:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn43Ad-RA | 1432 | CG1859-RA | 442..1287 | 865..20 | 4170 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:44:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7154399..7154983 | 281..865 | 2865 | 99.3 | Plus |
| 2R | 25286936 | 2R | 7154050..7154202 | 130..282 | 765 | 100 | Plus |
| 2R | 25286936 | 2R | 7153883..7153992 | 20..129 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:44:48 has no hits.
BO12287.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:30 Download gff for
BO12287.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1859-PA | 376..1224 | 17..865 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:05:29 Download gff for
BO12287.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1859-PA | 376..1224 | 17..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:33:55 Download gff for
BO12287.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Ad-RA | 442..1287 | 20..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:48:51 Download gff for
BO12287.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Ad-RA | 442..1287 | 20..865 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:48:51 Download gff for
BO12287.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7153883..7153992 | 20..129 | 100 | <- | Plus |
| 2R | 7154050..7154200 | 130..280 | 100 | <- | Plus |
| 2R | 7154399..7154983 | 281..865 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:33:55 Download gff for
BO12287.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3041388..3041497 | 20..129 | 100 | <- | Plus |
| arm_2R | 3041555..3041705 | 130..280 | 100 | <- | Plus |
| arm_2R | 3041904..3042488 | 281..865 | 99 | | Plus |
BO12287.5prime Sequence
862 bp (764 high quality bases) assembled on 2006-04-20
> BO12287.5prime
GAAGTTATCAGTCGACATGATCCACTGGAGACTTCTTTCCGCCCTACTTG
TGGGCCTGGCTATAGCTTTAACGCTTCCAGTCGACGGGGAGCTCTTGGCC
AGATCGCCGGCCAGCGTCTCGAGTAACCGCTTTGGCCTACGCCTAACTAC
TAAGTTGGGACTAACTCAACCAGATGCAAATGTGGTGGTTTCCCCCTTGC
TTATACAGGCGGCGCTCAGCCTGCTGTATGCGGAAAGTTCTTCGGAGTAC
GGTAGCCAACTCCGCCAGGCTCTGGAGCTGACCCACGCCAGTCACCCGAA
GCTTGCGGTGCAGGACTTCGAGACCCTTTTGACGGACCTCAAGCAGTCGG
CTGCCATTGGCTGTCGCTTGCGGTTGCTGAGTGACCTCTACGCACAGCAG
CGCTTCACCTTCAACTTCCGCAATGAATTCGAGACCTTGGCCGCCCGAAT
GGGCGTCGGCTGCCACCGCTTGTCGTGGGAAAGTGCGTCGAACGCGGCCC
AGGATATCAACTACGCCTTCCTTAGCCGCAGCAACTTCAGCCTGGGGGAG
CTCGTCAGTGCCCCCCAACTCGAGTCCTTGGCCGAGCACAACACGCCCTT
TTTACACGTCTCGGGAGTCACCTTCCGAGCCCCTTGGGCTTGGGCCTTCG
ATCCTACCGAGACGCAGAGCATCAACTTCTTTGCCGGGGGAAATCGCCCC
AGGCTGGTGGATGCCATGTTCGGACAGCACCGCTACAGGTACGCTGAAGT
GCCCGCTCTGGACGCCCAGCTCATTGAGGTGCCCTTCGCCACTGCAGACC
TCCGAATGCTCATTGTATTTCCCAATCGGGCTGATGGCCTGGCCCAACTT
GAGAGGAAGCTG
BO12287.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1859-PA | 1224 | Spn43Ad-RA | 1..846 | 17..862 | 4205 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:11:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn43Ad-RA | 1432 | CG1859-RA | 65..912 | 15..862 | 4225 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:11:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7154513..7155360 | 862..15 | 4225 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:11:27 has no hits.
BO12287.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:31 Download gff for
BO12287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1859-PA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:05:30 Download gff for
BO12287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1859-PA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:53:12 Download gff for
BO12287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Ad-RA | 61..912 | 9..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:17:21 Download gff for
BO12287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Ad-RA | 61..912 | 9..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:17:21 Download gff for
BO12287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7154513..7155364 | 9..862 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:53:12 Download gff for
BO12287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3042018..3042869 | 9..862 | 99 | | Minus |
BO12287.complete Sequence
1256 bp assembled on 2011-06-28
> BO12287.complete
GAAGTTATCAGTCGACATGATCCACTGGAGACTTCTTTCCGCCCTACTTG
TGGGCCTGGCTATAGCTTTAACGCTTCCAGTCGACGGGGAGCTCTTGGCC
AGATCGCCGGCCAGCGTCTCGAGTAACCGCTTTGGCCTACGCCTAACTAC
TAAGTTGGGACTAACTCAACCAGATGCAAATGTGGTGGTTTCCCCCTTGC
TTATACAGGCGGCGCTCAGCCTGCTGTATGCGGAAAGTTCTTCGGAGTAC
GGTAGCCAACTCCGCCAGGCTCTGGAGCTGACCCACGCCAGTCACCCGAA
GCTTGCGGTGCAGGACTTCGAGACCCTTTTGACGGACCTCAAGCAGTCGG
CTGCCATTGGCTGTCGCTTGCGGTTGCTGAGTGACCTCTACGCACAGCAG
CGCTTCACCTTCAACTTCCGCAATGAATTCGAGACCTTGGCCGCCCGAAT
GGGCGTCGGCTGCCACCGCTTGTCGTGGGAAAGTGCGTCGAACGCGGCCC
AGGATATCAACTACGCCTTCCTTAGCCGCAGCAACTTCAGCCTGGGGGAG
CTCGTCAGTGCCCCCCAACTCGAGTCCTTGGCCGAGCACAACACGCCCTT
TTTACACGTCTCGGGAGTCACCTTCCGAGCCCCTTGGGCTTGGGCCTTCG
ATCCTACCGAGACGCAGAGCATCAACTTCTTTGCCGGGGGAAATCGCCCC
AGGCTGGTGGATGCCATGTTCGGACAGCACCGCTACAGGTACGCTGAAGT
GCCCGCTCTGGACGCCCAGCTCATTGAGGTGCCCTTCGCCACTGCAGACC
TCCGAATGCTCATTGTATTTCCCAATCGGCCTGATGGCCTGGCCCAACTT
GAGAGGAAGCTGGCGCAGTCCGATCTCCACCAGCTAAGGTCCCAGCTCGA
GGAGCGCAAGGTGGCCCTCACTCTGCCCAAGCTCAGAGTGCTAGTCCACT
CCGACCTGAAGCACGTGCTCGAGGAGTTGGGTCTGGCAAAACTATTCACA
TCGGAGGTCCACCTGAGCGAGGTCTTCAGCTCCATCCTGTCCAGTTCGGC
TCCACCCTTGGGAGCAGTGGTCCAGAGTGGTCTCCTGGAGCTACAGGAGG
ATGGCGGCAATGCCGACGACTCGTTCTCCTTCGGGGATCTGTTCCGACGA
GCCCTGCCCCTGGTCATCAATCACCCGTTCTTTTACGCCATCGGCAATGG
CAAAACTCTGCTGCTGTCCGGCCACATCGTCGACATCGCAAAGCTTTCTA
GACCAT
BO12287.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:15:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn43Ad-RA | 1224 | CG1859-PA | 1..1221 | 17..1237 | 6105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:15:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn43Ad-RA | 1432 | CG1859-RA | 65..1287 | 15..1237 | 6115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:15:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7154399..7155360 | 976..15 | 4810 | 100 | Minus |
| 2R | 25286936 | 2R | 7154050..7154202 | 1127..975 | 765 | 100 | Minus |
| 2R | 25286936 | 2R | 7153883..7153992 | 1237..1128 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:15:48 has no hits.
BO12287.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:25 Download gff for
BO12287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Ad-RA | 65..1285 | 17..1239 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:56:19 Download gff for
BO12287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Ad-RA | 67..1287 | 17..1239 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:14:58 Download gff for
BO12287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Ad-RA | 67..1287 | 17..1239 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:14:58 Download gff for
BO12287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7154050..7154200 | 977..1127 | 100 | <- | Minus |
| 2R | 7153880..7153992 | 1128..1239 | 98 | <- | Minus |
| 2R | 7154399..7155358 | 17..976 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:56:19 Download gff for
BO12287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3041385..3041497 | 1128..1239 | 98 | <- | Minus |
| arm_2R | 3041555..3041705 | 977..1127 | 100 | <- | Minus |
| arm_2R | 3041904..3042863 | 17..976 | 100 | | Minus |
BO12287.pep Sequence
Translation from 16 to 1255
> BO12287.pep
MIHWRLLSALLVGLAIALTLPVDGELLARSPASVSSNRFGLRLTTKLGLT
QPDANVVVSPLLIQAALSLLYAESSSEYGSQLRQALELTHASHPKLAVQD
FETLLTDLKQSAAIGCRLRLLSDLYAQQRFTFNFRNEFETLAARMGVGCH
RLSWESASNAAQDINYAFLSRSNFSLGELVSAPQLESLAEHNTPFLHVSG
VTFRAPWAWAFDPTETQSINFFAGGNRPRLVDAMFGQHRYRYAEVPALDA
QLIEVPFATADLRMLIVFPNRPDGLAQLERKLAQSDLHQLRSQLEERKVA
LTLPKLRVLVHSDLKHVLEELGLAKLFTSEVHLSEVFSSILSSSAPPLGA
VVQSGLLELQEDGGNADDSFSFGDLFRRALPLVINHPFFYAIGNGKTLLL
SGHIVDIAKLSRP
BO12287.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:51:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn43Ad-PA | 407 | CG1859-PA | 1..407 | 1..407 | 2049 | 100 | Plus |
| Spn42Da-PL | 379 | CG9453-PL | 16..376 | 39..404 | 361 | 28.5 | Plus |
| Spn42Da-PK | 379 | CG9453-PK | 16..376 | 39..404 | 361 | 28.5 | Plus |
| Spn42Da-PH | 379 | CG9453-PH | 16..376 | 39..404 | 361 | 28.5 | Plus |
| Spn42Da-PG | 379 | CG9453-PG | 16..376 | 39..404 | 361 | 29 | Plus |
