Clone BO12288 Report

Search the DGRC for BO12288

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:122
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG13197-RA
Protein status:BO12288.pep: Imported from assembly
Sequenced Size:1063

Clone Sequence Records

BO12288.3prime Sequence

837 bp (766 high quality bases) assembled on 2006-04-20

> BO12288.3prime
ATGGTCTAGAAAGCTTGCCTTTTGATCGCTGTAGTTTCTTTCGCTCCAGT
TTCTTTCACTGTAGTTTCTTTCGCTATAGTTTCTTCTCGAATAATCCCAG
TTCCTTTGATACCTTTGATGAGGTTCCTGTTGATAGCTTATCGAGCCCTG
CTGATAGTCTCCTCCTGATCGGTTACTTTGAATCCTATATTGCTCTTCGA
CTGGATGCGGTCTATGGTTACGGGAATAAGGATGTTGGTTCGAGCCCTGC
TGATATCCATCTCTAGATCGGTTACTTTGAATCCTTCTTTGTTCTTCGAC
TGGATGCGGTCTATGGTTACGGGCATAAGGATGTTGGTTCCAGCGGTCGC
GTCTTCGACAGTCGTCGTGTTCCTGATAGGATTTCGTTTCCAAGACTTTT
GACAGTCTGTGGTTGTTTTTCTGATGCAAATCTCTTTCGCTTTGGTAATC
AATTGGCTGACGCCAATTATCTATTGTGGATGATCTCCTCTCTGTGGCAG
CAAGCTTCGTTACGGTCTCCCGATTCGGGAGTGTCTTTAGAGAGCTCAGG
TAATTGTCGCGTTCGATTTCATGGCCGCGGGCCAAAGAAAAGGTTTGTAT
CGCCTCCTCAGGGGACATGTTCATTACGGAGATCATGAAGTAGCAGATCA
GGTATCCAGTTCGATTTACTCCATGTGTGCAATGGACGCCAATTAGTTTG
TCATTATCCGCGTTCCTTTCAAGGAAGTCAGTCACGAAAGCACAGAATCT
TTGGGCTAGCTTATGCGAGGGTGTCTGTTTTCCGGGGATCATCAGCTTTC
TGGTGGAGCACATCGTGGTTGGTTATGGCACTTGGGT

BO12288.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG13197-PA 1032 CG13197-RA 250..1029 798..19 3850 99.7 Minus
CG13197-PA 1032 CG13197-RA 212..251 837..798 200 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:00:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG13197-RB 3613 CG13197-RB 317..1134 837..19 4040 99.6 Minus
CG13197-RA 1274 CG13197-RA 317..1134 837..19 4040 99.6 Minus
CG13197-RB 3613 CG13197-RB 908..1012 344..240 360 89.5 Minus
CG13197-RA 1274 CG13197-RA 908..1012 344..240 360 89.5 Minus
CG13197-RB 3613 CG13197-RB 809..913 245..141 345 88.6 Minus
CG13197-RA 1274 CG13197-RA 809..913 245..141 345 88.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:00:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11694918..11695306 407..19 1915 99.5 Minus
2R 25286936 2R 11694655..11694841 593..407 935 100 Minus
2R 25286936 2R 11694473..11694581 702..594 545 100 Minus
2R 25286936 2R 11692080..11692167 837..749 395 98.9 Minus
2R 25286936 2R 11695080..11695184 344..240 360 89.5 Minus
2R 25286936 2R 11694981..11695085 245..141 345 88.6 Minus
2R 25286936 2R 11692497..11692545 750..702 245 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:00:32 has no hits.

BO12288.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:32 Download gff for BO12288.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13197-PA 212..1032 18..837 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:05:32 Download gff for BO12288.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13197-PA 212..1032 18..837 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:50:31 Download gff for BO12288.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13197-RA 317..1138 13..837 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:22:20 Download gff for BO12288.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13197-RA 317..1138 13..837 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:22:20 Download gff for BO12288.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11692080..11692167 749..837 98 -> Minus
2R 11692499..11692545 702..748 100 -> Minus
2R 11694474..11694581 594..701 100 -> Minus
2R 11694655..11694840 408..593 100 -> Minus
2R 11694918..11695310 13..407 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:50:31 Download gff for BO12288.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7579585..7579672 749..837 98 -> Minus
arm_2R 7580004..7580050 702..748 100 -> Minus
arm_2R 7581979..7582086 594..701 100 -> Minus
arm_2R 7582160..7582345 408..593 100 -> Minus
arm_2R 7582423..7582815 13..407 98   Minus

BO12288.5prime Sequence

742 bp (707 high quality bases) assembled on 2006-04-20

> BO12288.5prime
GAAGTTATCAGTCGACATGGTCAAGGACATACCAGACAGATGGCTGAAGT
ACAAACCGATTGGAGATCGTGTTCCTGGCACTCGTTTCATAGCCTTTAAG
GTGCCGCTGAATCAGCATGTCAACGCCAAAGTGAAGGAGAATCTTCGGCT
GGCGCCCGAATCCCTTCTGCAGATCGTACCCGATATGGGTCTCATCATCG
ATTTGACCAACACGAATCGATACTACCACCCAAGTGCCATAACCAACCAC
GATGTGCTCCACCAGAAGCTGATGATCCCCGGAAAACAGACACCCTCGCA
TAAGCTAGCCCAAAGATTCTGTGCTTTCGTGACTGACTTCCTTGAAAGGA
ACGCGGATAATGACAAACTAATTGGCGTCCATTGCACACATGGAGTAAAT
CGAACTGGATACCTGATCTGCTACTTCATGATCTCCGTAATGAACATGTC
CCCTGAGGAGGCGATACAAACCTTTTCTTTGGCCCGCGGCCATGAAATCG
AACGCGACAATTACCTGAGCTCTCTAAAGACACTCCCGAATCGGGAGACC
GTAACGAAGCTTGCTGCCACAGAGAGGAGATCATCCACAATAGATAATTG
GCGTCAGCCAATTGATTACCAAAGCGAAAGAGATTTGCATCAGAAAAACA
ACCACAGACTGTCAAAAGTCTTGAAAACGAAATCCTATCAGGAACACGAC
GACTGTCGAAACCACGTGGACACTCTTTGCGTACTAACGCTC

BO12288.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG13197-PA 1032 CG13197-RA 1..694 17..710 3470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG13197-RB 3613 CG13197-RB 106..799 17..710 3470 100 Plus
CG13197-RA 1274 CG13197-RA 106..799 17..710 3470 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:26:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11691965..11692167 113..315 1015 100 Plus
2R 25286936 2R 11694655..11694841 471..657 935 100 Plus
2R 25286936 2R 11694473..11694581 362..470 545 100 Plus
2R 25286936 2R 11691497..11691575 37..115 395 100 Plus
2R 25286936 2R 11694918..11694971 657..710 270 100 Plus
2R 25286936 2R 11692497..11692545 314..362 245 100 Plus
Blast to na_te.dros performed on 2015-02-04 03:26:28 has no hits.

BO12288.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:33 Download gff for BO12288.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13197-PA 1..698 17..716 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:05:34 Download gff for BO12288.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13197-PA 1..698 17..716 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:53:36 Download gff for BO12288.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13197-RA 98..803 9..716 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:29:11 Download gff for BO12288.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13197-RA 98..803 9..716 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:29:11 Download gff for BO12288.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11691500..11691575 40..115 100 -> Plus
2R 11691968..11692167 116..315 100 -> Plus
2R 11692499..11692545 316..362 100 -> Plus
2R 11694474..11694581 363..470 100 -> Plus
2R 11694655..11694840 471..656 100 -> Plus
2R 11694918..11694975 657..716 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:53:36 Download gff for BO12288.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7579005..7579080 40..115 100 -> Plus
arm_2R 7579473..7579672 116..315 100 -> Plus
arm_2R 7580004..7580050 316..362 100 -> Plus
arm_2R 7581979..7582086 363..470 100 -> Plus
arm_2R 7582160..7582345 471..656 100 -> Plus
arm_2R 7582423..7582480 657..716 95   Plus

BO12288.complete Sequence

1063 bp assembled on 2010-02-09

GenBank Submission: FJ632393

> BO12288.complete
GAAGTTATCAGTCGACATGGTCAAGGACATACCAGACAGATGGCTGAAGT
ACAAACCGATTGGAGATCGTGTTCCTGGCACTCGTTTCATAGCCTTTAAG
GTGCCGCTGAATCAGCATGTCAACGCCAAAGTGAAGGAGAATCTTCGGCT
GGCGCCCGAATCCCTTCTGCAGATCGTACCCGATATGGGTCTCATCATCG
ATTTGACCAACACGAATCGATACTACCACCCAAGTGCCATAACCAACCAC
GATGTGCTCCACCAGAAGCTGATGATCCCCGGAAAACAGACACCCTCGCA
TAAGCTAGCCCAAAGATTCTGTGCTTTCGTGACTGACTTCCTTGAAAGGA
ACGCGGATAATGACAAACTAATTGGCGTCCATTGCACACATGGAGTAAAT
CGAACTGGATACCTGATCTGCTACTTCATGATCTCCGTAATGAACATGTC
CCCTGAGGAGGCGATACAAACCTTTTCTTTGGCCCGCGGCCATGAAATCG
AACGCGACAATTACCTGAGCTCTCTAAAGACACTCCCGAATCGGGAGACC
GTAACGAAGCTTGCTGCCACAGAGAGGAGATCATCCACAATAGATAATTG
GCGTCAGCCAATTGATTACCAAAGCGAAAGAGATTTGCATCAGAAAAACA
ACCACAGACTGTCAAAAGTCTTGAAAACGAAATCCTATCAGGAACACGAC
GACTGTCGAAGACGCGACCGCTGGAACCAACATCCTTATGCCCGTAACCA
TAGACCGCATCCAGTCGAAGAACAAAGAAGGATTCAAAGTAACCGATCTA
GAGATGGATATCAGCAGGGCTCGAACCAACATCCTTATTCCCGTAACCAT
AGACCGCATCCAGTCGAAGAGCAATATAGGATTCAAAGTAACCGATCAGG
AGGAGGCTATCAGCAGGGCTCGATAAGCTATCAACAGGAACCTCATCAAA
GGTATCAAAGGAACTGGGATTATTCGAGAAGAAACTATAGCGAAAGAAAC
TACAGTGAAAGAAACTGGAGCGAAAGAAACTACAGCGATCAAAAGGCAAG
CTTTCTAGACCAT

BO12288.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:00:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG13197-RB 1032 CG13197-PB 1..1029 17..1045 5145 100 Plus
CG13197-RA 1032 CG13197-PA 1..1029 17..1045 5145 100 Plus
CG13197-RB 1032 CG13197-PB 704..808 819..923 360 89.5 Plus
CG13197-RB 1032 CG13197-PB 803..907 720..824 360 89.5 Plus
CG13197-RA 1032 CG13197-PA 704..808 819..923 360 89.5 Plus
CG13197-RA 1032 CG13197-PA 803..907 720..824 360 89.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:01:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG13197-RB 3613 CG13197-RB 106..1134 17..1045 5145 100 Plus
CG13197-RA 1274 CG13197-RA 106..1134 17..1045 5145 100 Plus
CG13197-RB 3613 CG13197-RB 809..913 819..923 360 89.5 Plus
CG13197-RB 3613 CG13197-RB 908..1012 720..824 360 89.5 Plus
CG13197-RA 1274 CG13197-RA 809..913 819..923 360 89.5 Plus
CG13197-RA 1274 CG13197-RA 908..1012 720..824 360 89.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11694918..11695306 657..1045 1945 100 Plus
2R 25286936 2R 11691965..11692167 113..315 1015 100 Plus
2R 25286936 2R 11694655..11694841 471..657 935 100 Plus
2R 25286936 2R 11694473..11694581 362..470 545 100 Plus
2R 25286936 2R 11691497..11691575 37..115 395 100 Plus
2R 25286936 2R 11694981..11695085 819..923 360 89.5 Plus
2R 25286936 2R 11695080..11695184 720..824 360 89.5 Plus
2R 25286936 2R 11692497..11692545 314..362 245 100 Plus
Blast to na_te.dros performed on 2014-11-27 11:00:58 has no hits.

BO12288.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:32 Download gff for BO12288.complete
Subject Subject Range Query Range Percent Splice Strand
CG13197-RA 95..1123 17..1047 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:09 Download gff for BO12288.complete
Subject Subject Range Query Range Percent Splice Strand
CG13197-RA 106..1134 17..1047 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:06:41 Download gff for BO12288.complete
Subject Subject Range Query Range Percent Splice Strand
CG13197-RA 95..1123 17..1047 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:41 Download gff for BO12288.complete
Subject Subject Range Query Range Percent Splice Strand
CG13197-RA 106..1134 17..1047 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:41 Download gff for BO12288.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11691390..11691412 17..39 100 -> Plus
2R 11691500..11691575 40..115 100 -> Plus
2R 11691968..11692167 116..315 100 -> Plus
2R 11692499..11692545 316..362 100 -> Plus
2R 11694474..11694581 363..470 100 -> Plus
2R 11694655..11694840 471..656 100 -> Plus
2R 11694918..11695306 657..1047 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:09 Download gff for BO12288.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7578895..7578917 17..39 100 -> Plus
arm_2R 7579005..7579080 40..115 100 -> Plus
arm_2R 7579473..7579672 116..315 100 -> Plus
arm_2R 7580004..7580050 316..362 100 -> Plus
arm_2R 7581979..7582086 363..470 100 -> Plus
arm_2R 7582160..7582345 471..656 100 -> Plus
arm_2R 7582423..7582811 657..1047 99   Plus

BO12288.pep Sequence

Translation from 16 to 1063

> BO12288.pep
MVKDIPDRWLKYKPIGDRVPGTRFIAFKVPLNQHVNAKVKENLRLAPESL
LQIVPDMGLIIDLTNTNRYYHPSAITNHDVLHQKLMIPGKQTPSHKLAQR
FCAFVTDFLERNADNDKLIGVHCTHGVNRTGYLICYFMISVMNMSPEEAI
QTFSLARGHEIERDNYLSSLKTLPNRETVTKLAATERRSSTIDNWRQPID
YQSERDLHQKNNHRLSKVLKTKSYQEHDDCRRRDRWNQHPYARNHRPHPV
EEQRRIQSNRSRDGYQQGSNQHPYSRNHRPHPVEEQYRIQSNRSGGGYQQ
GSISYQQEPHQRYQRNWDYSRRNYSERNYSERNWSERNYSDQKASFLDH

BO12288.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG13197-PB 343 CG13197-PB 1..343 1..343 1864 100 Plus
CG13197-PA 343 CG13197-PA 1..343 1..343 1864 100 Plus
mRNA-cap-PA 649 CG1810-PA 15..183 5..170 242 34.9 Plus