Clone Sequence Records
BO12288.3prime Sequence
837 bp (766 high quality bases) assembled on 2006-04-20
> BO12288.3prime
ATGGTCTAGAAAGCTTGCCTTTTGATCGCTGTAGTTTCTTTCGCTCCAGT
TTCTTTCACTGTAGTTTCTTTCGCTATAGTTTCTTCTCGAATAATCCCAG
TTCCTTTGATACCTTTGATGAGGTTCCTGTTGATAGCTTATCGAGCCCTG
CTGATAGTCTCCTCCTGATCGGTTACTTTGAATCCTATATTGCTCTTCGA
CTGGATGCGGTCTATGGTTACGGGAATAAGGATGTTGGTTCGAGCCCTGC
TGATATCCATCTCTAGATCGGTTACTTTGAATCCTTCTTTGTTCTTCGAC
TGGATGCGGTCTATGGTTACGGGCATAAGGATGTTGGTTCCAGCGGTCGC
GTCTTCGACAGTCGTCGTGTTCCTGATAGGATTTCGTTTCCAAGACTTTT
GACAGTCTGTGGTTGTTTTTCTGATGCAAATCTCTTTCGCTTTGGTAATC
AATTGGCTGACGCCAATTATCTATTGTGGATGATCTCCTCTCTGTGGCAG
CAAGCTTCGTTACGGTCTCCCGATTCGGGAGTGTCTTTAGAGAGCTCAGG
TAATTGTCGCGTTCGATTTCATGGCCGCGGGCCAAAGAAAAGGTTTGTAT
CGCCTCCTCAGGGGACATGTTCATTACGGAGATCATGAAGTAGCAGATCA
GGTATCCAGTTCGATTTACTCCATGTGTGCAATGGACGCCAATTAGTTTG
TCATTATCCGCGTTCCTTTCAAGGAAGTCAGTCACGAAAGCACAGAATCT
TTGGGCTAGCTTATGCGAGGGTGTCTGTTTTCCGGGGATCATCAGCTTTC
TGGTGGAGCACATCGTGGTTGGTTATGGCACTTGGGT
BO12288.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13197-PA | 1032 | CG13197-RA | 250..1029 | 798..19 | 3850 | 99.7 | Minus |
CG13197-PA | 1032 | CG13197-RA | 212..251 | 837..798 | 200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:00:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13197-RB | 3613 | CG13197-RB | 317..1134 | 837..19 | 4040 | 99.6 | Minus |
CG13197-RA | 1274 | CG13197-RA | 317..1134 | 837..19 | 4040 | 99.6 | Minus |
CG13197-RB | 3613 | CG13197-RB | 908..1012 | 344..240 | 360 | 89.5 | Minus |
CG13197-RA | 1274 | CG13197-RA | 908..1012 | 344..240 | 360 | 89.5 | Minus |
CG13197-RB | 3613 | CG13197-RB | 809..913 | 245..141 | 345 | 88.6 | Minus |
CG13197-RA | 1274 | CG13197-RA | 809..913 | 245..141 | 345 | 88.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:00:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11694918..11695306 | 407..19 | 1915 | 99.5 | Minus |
2R | 25286936 | 2R | 11694655..11694841 | 593..407 | 935 | 100 | Minus |
2R | 25286936 | 2R | 11694473..11694581 | 702..594 | 545 | 100 | Minus |
2R | 25286936 | 2R | 11692080..11692167 | 837..749 | 395 | 98.9 | Minus |
2R | 25286936 | 2R | 11695080..11695184 | 344..240 | 360 | 89.5 | Minus |
2R | 25286936 | 2R | 11694981..11695085 | 245..141 | 345 | 88.6 | Minus |
2R | 25286936 | 2R | 11692497..11692545 | 750..702 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:00:32 has no hits.
BO12288.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:32 Download gff for
BO12288.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13197-PA | 212..1032 | 18..837 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:05:32 Download gff for
BO12288.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13197-PA | 212..1032 | 18..837 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:50:31 Download gff for
BO12288.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13197-RA | 317..1138 | 13..837 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:22:20 Download gff for
BO12288.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13197-RA | 317..1138 | 13..837 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:22:20 Download gff for
BO12288.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11692080..11692167 | 749..837 | 98 | -> | Minus |
2R | 11692499..11692545 | 702..748 | 100 | -> | Minus |
2R | 11694474..11694581 | 594..701 | 100 | -> | Minus |
2R | 11694655..11694840 | 408..593 | 100 | -> | Minus |
2R | 11694918..11695310 | 13..407 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:50:31 Download gff for
BO12288.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7579585..7579672 | 749..837 | 98 | -> | Minus |
arm_2R | 7580004..7580050 | 702..748 | 100 | -> | Minus |
arm_2R | 7581979..7582086 | 594..701 | 100 | -> | Minus |
arm_2R | 7582160..7582345 | 408..593 | 100 | -> | Minus |
arm_2R | 7582423..7582815 | 13..407 | 98 | | Minus |
BO12288.5prime Sequence
742 bp (707 high quality bases) assembled on 2006-04-20
> BO12288.5prime
GAAGTTATCAGTCGACATGGTCAAGGACATACCAGACAGATGGCTGAAGT
ACAAACCGATTGGAGATCGTGTTCCTGGCACTCGTTTCATAGCCTTTAAG
GTGCCGCTGAATCAGCATGTCAACGCCAAAGTGAAGGAGAATCTTCGGCT
GGCGCCCGAATCCCTTCTGCAGATCGTACCCGATATGGGTCTCATCATCG
ATTTGACCAACACGAATCGATACTACCACCCAAGTGCCATAACCAACCAC
GATGTGCTCCACCAGAAGCTGATGATCCCCGGAAAACAGACACCCTCGCA
TAAGCTAGCCCAAAGATTCTGTGCTTTCGTGACTGACTTCCTTGAAAGGA
ACGCGGATAATGACAAACTAATTGGCGTCCATTGCACACATGGAGTAAAT
CGAACTGGATACCTGATCTGCTACTTCATGATCTCCGTAATGAACATGTC
CCCTGAGGAGGCGATACAAACCTTTTCTTTGGCCCGCGGCCATGAAATCG
AACGCGACAATTACCTGAGCTCTCTAAAGACACTCCCGAATCGGGAGACC
GTAACGAAGCTTGCTGCCACAGAGAGGAGATCATCCACAATAGATAATTG
GCGTCAGCCAATTGATTACCAAAGCGAAAGAGATTTGCATCAGAAAAACA
ACCACAGACTGTCAAAAGTCTTGAAAACGAAATCCTATCAGGAACACGAC
GACTGTCGAAACCACGTGGACACTCTTTGCGTACTAACGCTC
BO12288.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13197-PA | 1032 | CG13197-RA | 1..694 | 17..710 | 3470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:26:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13197-RB | 3613 | CG13197-RB | 106..799 | 17..710 | 3470 | 100 | Plus |
CG13197-RA | 1274 | CG13197-RA | 106..799 | 17..710 | 3470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:26:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11691965..11692167 | 113..315 | 1015 | 100 | Plus |
2R | 25286936 | 2R | 11694655..11694841 | 471..657 | 935 | 100 | Plus |
2R | 25286936 | 2R | 11694473..11694581 | 362..470 | 545 | 100 | Plus |
2R | 25286936 | 2R | 11691497..11691575 | 37..115 | 395 | 100 | Plus |
2R | 25286936 | 2R | 11694918..11694971 | 657..710 | 270 | 100 | Plus |
2R | 25286936 | 2R | 11692497..11692545 | 314..362 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:26:28 has no hits.
BO12288.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:33 Download gff for
BO12288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13197-PA | 1..698 | 17..716 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:05:34 Download gff for
BO12288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13197-PA | 1..698 | 17..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:53:36 Download gff for
BO12288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13197-RA | 98..803 | 9..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:29:11 Download gff for
BO12288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13197-RA | 98..803 | 9..716 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:29:11 Download gff for
BO12288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11691500..11691575 | 40..115 | 100 | -> | Plus |
2R | 11691968..11692167 | 116..315 | 100 | -> | Plus |
2R | 11692499..11692545 | 316..362 | 100 | -> | Plus |
2R | 11694474..11694581 | 363..470 | 100 | -> | Plus |
2R | 11694655..11694840 | 471..656 | 100 | -> | Plus |
2R | 11694918..11694975 | 657..716 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:53:36 Download gff for
BO12288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7579005..7579080 | 40..115 | 100 | -> | Plus |
arm_2R | 7579473..7579672 | 116..315 | 100 | -> | Plus |
arm_2R | 7580004..7580050 | 316..362 | 100 | -> | Plus |
arm_2R | 7581979..7582086 | 363..470 | 100 | -> | Plus |
arm_2R | 7582160..7582345 | 471..656 | 100 | -> | Plus |
arm_2R | 7582423..7582480 | 657..716 | 95 | | Plus |
BO12288.complete Sequence
1063 bp assembled on 2010-02-09
GenBank Submission: FJ632393
> BO12288.complete
GAAGTTATCAGTCGACATGGTCAAGGACATACCAGACAGATGGCTGAAGT
ACAAACCGATTGGAGATCGTGTTCCTGGCACTCGTTTCATAGCCTTTAAG
GTGCCGCTGAATCAGCATGTCAACGCCAAAGTGAAGGAGAATCTTCGGCT
GGCGCCCGAATCCCTTCTGCAGATCGTACCCGATATGGGTCTCATCATCG
ATTTGACCAACACGAATCGATACTACCACCCAAGTGCCATAACCAACCAC
GATGTGCTCCACCAGAAGCTGATGATCCCCGGAAAACAGACACCCTCGCA
TAAGCTAGCCCAAAGATTCTGTGCTTTCGTGACTGACTTCCTTGAAAGGA
ACGCGGATAATGACAAACTAATTGGCGTCCATTGCACACATGGAGTAAAT
CGAACTGGATACCTGATCTGCTACTTCATGATCTCCGTAATGAACATGTC
CCCTGAGGAGGCGATACAAACCTTTTCTTTGGCCCGCGGCCATGAAATCG
AACGCGACAATTACCTGAGCTCTCTAAAGACACTCCCGAATCGGGAGACC
GTAACGAAGCTTGCTGCCACAGAGAGGAGATCATCCACAATAGATAATTG
GCGTCAGCCAATTGATTACCAAAGCGAAAGAGATTTGCATCAGAAAAACA
ACCACAGACTGTCAAAAGTCTTGAAAACGAAATCCTATCAGGAACACGAC
GACTGTCGAAGACGCGACCGCTGGAACCAACATCCTTATGCCCGTAACCA
TAGACCGCATCCAGTCGAAGAACAAAGAAGGATTCAAAGTAACCGATCTA
GAGATGGATATCAGCAGGGCTCGAACCAACATCCTTATTCCCGTAACCAT
AGACCGCATCCAGTCGAAGAGCAATATAGGATTCAAAGTAACCGATCAGG
AGGAGGCTATCAGCAGGGCTCGATAAGCTATCAACAGGAACCTCATCAAA
GGTATCAAAGGAACTGGGATTATTCGAGAAGAAACTATAGCGAAAGAAAC
TACAGTGAAAGAAACTGGAGCGAAAGAAACTACAGCGATCAAAAGGCAAG
CTTTCTAGACCAT
BO12288.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:00:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13197-RB | 1032 | CG13197-PB | 1..1029 | 17..1045 | 5145 | 100 | Plus |
CG13197-RA | 1032 | CG13197-PA | 1..1029 | 17..1045 | 5145 | 100 | Plus |
CG13197-RB | 1032 | CG13197-PB | 704..808 | 819..923 | 360 | 89.5 | Plus |
CG13197-RB | 1032 | CG13197-PB | 803..907 | 720..824 | 360 | 89.5 | Plus |
CG13197-RA | 1032 | CG13197-PA | 704..808 | 819..923 | 360 | 89.5 | Plus |
CG13197-RA | 1032 | CG13197-PA | 803..907 | 720..824 | 360 | 89.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:01:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13197-RB | 3613 | CG13197-RB | 106..1134 | 17..1045 | 5145 | 100 | Plus |
CG13197-RA | 1274 | CG13197-RA | 106..1134 | 17..1045 | 5145 | 100 | Plus |
CG13197-RB | 3613 | CG13197-RB | 809..913 | 819..923 | 360 | 89.5 | Plus |
CG13197-RB | 3613 | CG13197-RB | 908..1012 | 720..824 | 360 | 89.5 | Plus |
CG13197-RA | 1274 | CG13197-RA | 809..913 | 819..923 | 360 | 89.5 | Plus |
CG13197-RA | 1274 | CG13197-RA | 908..1012 | 720..824 | 360 | 89.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:00:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11694918..11695306 | 657..1045 | 1945 | 100 | Plus |
2R | 25286936 | 2R | 11691965..11692167 | 113..315 | 1015 | 100 | Plus |
2R | 25286936 | 2R | 11694655..11694841 | 471..657 | 935 | 100 | Plus |
2R | 25286936 | 2R | 11694473..11694581 | 362..470 | 545 | 100 | Plus |
2R | 25286936 | 2R | 11691497..11691575 | 37..115 | 395 | 100 | Plus |
2R | 25286936 | 2R | 11694981..11695085 | 819..923 | 360 | 89.5 | Plus |
2R | 25286936 | 2R | 11695080..11695184 | 720..824 | 360 | 89.5 | Plus |
2R | 25286936 | 2R | 11692497..11692545 | 314..362 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:00:58 has no hits.
BO12288.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:32 Download gff for
BO12288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13197-RA | 95..1123 | 17..1047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:09 Download gff for
BO12288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13197-RA | 106..1134 | 17..1047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:06:41 Download gff for
BO12288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13197-RA | 95..1123 | 17..1047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:41 Download gff for
BO12288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13197-RA | 106..1134 | 17..1047 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:41 Download gff for
BO12288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11691390..11691412 | 17..39 | 100 | -> | Plus |
2R | 11691500..11691575 | 40..115 | 100 | -> | Plus |
2R | 11691968..11692167 | 116..315 | 100 | -> | Plus |
2R | 11692499..11692545 | 316..362 | 100 | -> | Plus |
2R | 11694474..11694581 | 363..470 | 100 | -> | Plus |
2R | 11694655..11694840 | 471..656 | 100 | -> | Plus |
2R | 11694918..11695306 | 657..1047 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:09 Download gff for
BO12288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7578895..7578917 | 17..39 | 100 | -> | Plus |
arm_2R | 7579005..7579080 | 40..115 | 100 | -> | Plus |
arm_2R | 7579473..7579672 | 116..315 | 100 | -> | Plus |
arm_2R | 7580004..7580050 | 316..362 | 100 | -> | Plus |
arm_2R | 7581979..7582086 | 363..470 | 100 | -> | Plus |
arm_2R | 7582160..7582345 | 471..656 | 100 | -> | Plus |
arm_2R | 7582423..7582811 | 657..1047 | 99 | | Plus |
BO12288.pep Sequence
Translation from 16 to 1063
> BO12288.pep
MVKDIPDRWLKYKPIGDRVPGTRFIAFKVPLNQHVNAKVKENLRLAPESL
LQIVPDMGLIIDLTNTNRYYHPSAITNHDVLHQKLMIPGKQTPSHKLAQR
FCAFVTDFLERNADNDKLIGVHCTHGVNRTGYLICYFMISVMNMSPEEAI
QTFSLARGHEIERDNYLSSLKTLPNRETVTKLAATERRSSTIDNWRQPID
YQSERDLHQKNNHRLSKVLKTKSYQEHDDCRRRDRWNQHPYARNHRPHPV
EEQRRIQSNRSRDGYQQGSNQHPYSRNHRPHPVEEQYRIQSNRSGGGYQQ
GSISYQQEPHQRYQRNWDYSRRNYSERNYSERNWSERNYSDQKASFLDH
BO12288.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13197-PB | 343 | CG13197-PB | 1..343 | 1..343 | 1864 | 100 | Plus |
CG13197-PA | 343 | CG13197-PA | 1..343 | 1..343 | 1864 | 100 | Plus |
mRNA-cap-PA | 649 | CG1810-PA | 15..183 | 5..170 | 242 | 34.9 | Plus |