Clone Sequence Records
BO12289.3prime Sequence
886 bp (770 high quality bases) assembled on 2006-04-20
> BO12289.3prime
ATGGTCTAGAAAGCTTGCAGCGGAAGTGTGCGCCCGCCTGACGCCCCAAT
CTTCTTTGATCAAATCGGAGGCCTTTTCGCCAATCGCGATGACCGGAGCA
TTGGGATTCCCATTCACGATCGTTGGCATAATGCTGGCGTCCACCACTCG
AACTCCGGATACGCCATAGACCCGTAATCTCGGATCCACCACGGCCGTAA
CATCCCAGCTGGGTCCCATGCGACATGTGCCGGCGGGATGATAGATGGTG
AACGTAAACTCCTTGATGCAACATGCCCAATATTCATTCGACTGGAATGG
CAAATGTCTACAGCCTGGCAGCGGAATATTATGCAATCTGGAGCCGAAAC
GCTGAAATGCCTGGGTATTCGAGACATTGATAGCCAACTTGATGCCCTCG
ACCAGCACATCGATGTCCTCCTGGTGGGCAAAATAGTTTGGTATGATCTT
GGGCTGATGCTGCGGATTCCTCGAATTCAAGCGCACCCATCCCGTGCTCT
TGGGTCTCAGCAACAGGGGCAAAATCGACCAGGTTTCACTGTGCTGCAGT
GGTTTGTACACTGTGTTGTAGAAACCATCTCGTAGATTCAGTATCTTTCT
TATCTGCTCGCCACCATCGGAGTTAATGGAACTGGGACAAAAATGAAATT
GGACATCGGGCCAGTCTACCGAGGGATCTTGGTACTTGGTGTTTAGAAAG
GCGACACCTTCTACGCCCGAAAATGTCATCGGACCCCGTTCCCTTAGTAT
ATATTCCATGGAAACTGGAATGGTTTGGAAACGATTGCGGGTGACAGTCA
GTGGAGCGTCCACCACGAATGTGAGTCCACCCAGACCCACATGATCCTGC
ATATTGTTGCCCACTGGGAGATCCGAAATAACAGGG
BO12289.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9517-PB | 1842 | CG9517-RB | 972..1839 | 886..19 | 4315 | 99.8 | Minus |
| CG9517-PA | 2598 | CG9517-RA | 1728..2595 | 886..19 | 4315 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:25:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45065-RA | 3359 | CG45065-RA | 2268..3135 | 886..19 | 4325 | 99.9 | Minus |
| CG45064-RA | 3359 | CG45064-RA | 2268..3135 | 886..19 | 4325 | 99.9 | Minus |
| CG9518-RC | 3952 | CG9518-RC | 2623..2796 | 219..46 | 195 | 75.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:25:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14875594..14876461 | 19..886 | 4325 | 99.9 | Plus |
| X | 23542271 | X | 14864145..14864318 | 46..219 | 195 | 74.1 | Plus |
Blast to na_te.dros performed on 2015-01-31 12:25:27 has no hits.
BO12289.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:34 Download gff for
BO12289.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9517-PB | 972..1842 | 18..886 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:05:35 Download gff for
BO12289.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9517-PA | 1728..2598 | 18..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:59:47 Download gff for
BO12289.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9517-RB | 2267..3139 | 11..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:04:40 Download gff for
BO12289.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45064-RA | 2268..3140 | 11..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:04:40 Download gff for
BO12289.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14875589..14876461 | 11..886 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:59:47 Download gff for
BO12289.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14769622..14770494 | 11..886 | 99 | | Plus |
BO12289.5prime Sequence
777 bp (776 high quality bases) assembled on 2006-04-20
> BO12289.5prime
GAAGTTATCAGTCGACATGGCGTTTGGAACAATGACGTCTTTGCTTGGCA
TGATCCCGCTGCTGGCGATCGGCATGAATTTCTATCGCTATCAAAGCGTA
GATCCCGAGAACAAGGTCCAGGAGCCAACCGTCATACGTCGTCAGTATGA
TTTCGTGGTGATTGGCGGCGGATCCGCTGGAGCTGTGGTGGCGAATCGCC
TGAGTGAGGTGCGCAACTGGACCGTTCTGCTACTCGAAGCCGGCGGTGAT
GAAACGGAGATCTCGGACGTGCCAGCTCTGGCGGGCTATCTGCAGCTTAC
GGAGTTGGACTGGAAGTACCAGACTACGCCTTCATCCACCCGCCAGTATT
GTCAGGCGATGAAGGGCGATCGCTGCTTTTGGCCAAGAGGAAAAGTCTTG
GGCGGAAGTTCTGTTTTAAATGCTATGGTCTATGTTCGTGGCTCCAAGAA
CGACTATAATCATTGGGCATCGTTGGGTAATCCGGGTTGGGACTACGACA
GCATGCTCAAATACTTCCTGAAATCGGAAGACGTACGAAATCCCTATTTG
GCCAAGACGCCATACCATGAAACAGGTGGATACCTGACGGTTCAGGAGGC
TCCATGGCGTACACCACTCTCGATAGCCTTCCTCCAAGCGGGCATTGAGA
TGGGCTATGAGAACCGGGACATTAATGGAGCCCAACAGACGGGCTTCATG
CTTACGCAAAGCACAATTCGCCGCGGTGCTAGATGCTCCACGGGCAAGGC
CTTCATTCGTCCAGTTCGACAGCGTAA
BO12289.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9517-PB | 1842 | CG9517-RB | 1..761 | 17..777 | 3805 | 100 | Plus |
| CG9517-PA | 2598 | CG9517-RA | 837..1517 | 97..777 | 3405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:14:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45065-RA | 3359 | CG45065-RA | 1295..2057 | 15..777 | 3815 | 100 | Plus |
| CG45064-RA | 3359 | CG45064-RA | 1295..2057 | 15..777 | 3815 | 100 | Plus |
| CG9518-RC | 3952 | CG9518-RC | 1112..1712 | 144..750 | 255 | 70.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:14:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14876672..14877315 | 777..134 | 3220 | 100 | Minus |
| X | 23542271 | X | 14877545..14877663 | 133..15 | 595 | 100 | Minus |
| X | 23542271 | X | 14865229..14865610 | 750..369 | 245 | 70.9 | Minus |
| X | 23542271 | X | 14921251..14921417 | 324..158 | 190 | 74.3 | Minus |
Blast to na_te.dros performed on 2015-02-02 11:14:16 has no hits.
BO12289.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:35 Download gff for
BO12289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9517-PB | 1..759 | 17..775 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:05:37 Download gff for
BO12289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9517-PB | 1..759 | 17..775 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:17:57 Download gff for
BO12289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9517-RB | 1294..2056 | 15..777 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:29:13 Download gff for
BO12289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45064-RA | 1295..2057 | 15..777 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:29:13 Download gff for
BO12289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14876672..14877315 | 134..777 | 100 | <- | Minus |
| X | 14877545..14877663 | 15..133 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:17:57 Download gff for
BO12289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14770705..14771348 | 134..777 | 100 | <- | Minus |
| arm_X | 14771578..14771696 | 15..133 | 100 | | Minus |
BO12289.complete Sequence
1873 bp assembled on 2008-01-17
GenBank Submission: FJ632394
> BO12289.complete
GAAGTTATCAGTCGACATGGCGTTTGGAACAATGACGTCTTTGCTTGGCA
TGATCCCGCTGCTGGCGATCGGCATGAATTTCTATCGCTATCAAAGCGTA
GATCCCGAGAACAAGGTCCAGGAGCCAACCGTCATACGTCGTCAGTATGA
TTTCGTGGTGATTGGCGGCGGATCCGCTGGAGCTGTGGTGGCGAATCGCC
TGAGTGAGGTGCGCAACTGGACCGTTCTGCTACTCGAAGCCGGCGGTGAT
GAAACGGAGATCTCGGACGTGCCAGCTCTGGCGGGCTATCTGCAGCTTAC
GGAGTTGGACTGGAAGTACCAGACTACGCCTTCATCCACCCGCCAGTATT
GTCAGGCGATGAAGGGCGATCGCTGCTTTTGGCCAAGAGGAAAAGTCTTG
GGCGGAAGTTCTGTTTTAAATGCTATGGTCTATGTTCGTGGCTCCAAGAA
CGACTATAATCATTGGGCATCGTTGGGTAATCCGGGTTGGGACTACGACA
GCATGCTCAAATACTTCCTGAAATCGGAAGACGTACGAAATCCCTATTTG
GCCAAGACGCCATACCATGAAACAGGTGGATACCTGACGGTTCAGGAGGC
TCCATGGCGTACACCACTCTCGATAGCCTTCCTCCAAGCGGGCATTGAGA
TGGGCTATGAGAACCGGGACATTAATGGAGCCCAACAGACGGGCTTCATG
CTTACGCAAAGCACAATTCGCCGCGGTGCTAGATGCTCCACGGGCAAGGC
CTTCATTCGTCCAGTTCGACAGCGTAAGAATTTCGATGTCCTGCTCCATG
CGGAGGCCACAAGGATCCTGTTCGATAAGCAGAAGCGAGCCATTGGTGTG
GAATACATGAGGGGTGGCCGCAAGAATGTGGTTTTCGTGAGAAGAGAAGT
GATAGCCAGTGCTGGAGCTCTGAATACTCCCAAATTACTGATGCTTTCCG
GAGTTGGTCCCGCTGAGCATCTGCAGGAGCACAATATCCCTGTTATTTCG
GATCTCCCAGTGGGCAACAATATGCAGGATCATGTGGGTCTGGGTGGACT
CACCTTCGTGGTGGACGCTCCACTGACTGTCACCCGCAATCGTTTCCAAA
CCATTCCAGTTTCCATGGAATATATACTAAGGGAACGGGGTCCGATGACA
TTTTCGGGCGTAGAAGGTGTCGCCTTTCTAAACACCAAGTACCAAGATCC
CTCGGTAGACTGGCCCGATGTCCAATTTCATTTTTGTCCCAGTTCCATTA
ACTCCGATGGTGGCGAGCAGATAAGAAAGATACTGAATCTACGAGATGGT
TTCTACAACACAGTGTACAAACCACTGCAGCACAGTGAAACCTGGTCGAT
TTTGCCCCTGTTGCTGAGACCCAAGAGCACGGGATGGGTGCGCTTGAATT
CGAGGAATCCGCAGCATCAGCCCAAGATCATACCAAACTATTTTGCCCAC
CAGGAGGACATCGATGTGCTGGTCGAGGGCATCAAGTTGGCTATCAATGT
CTCGAATACCCAGGCATTTCAGCGTTTCGGCTCCAGATTGCATAATATTC
CGCTGCCAGGCTGTAGACATTTGCCATTCCAGTCGAATGAATATTGGGCA
TGTTGCATCAAGGAGTTTACGTTCACCATCTATCATCCCGCCGGCACATG
TCGCATGGGACCCAGCTGGGATGTTACGGCCGTGGTGGATCCGAGATTAC
GGGTCTATGGCGTATCCGGAGTTCGAGTGGTGGACGCCAGCATTATGCCA
ACGATCGTGAATGGGAATCCCAATGCTCCGGTCATCGCGATTGGCGAAAA
GGCCTCCGATTTGATCAAAGAAGATTGGGGCGTCAGGCGGGCGCACACTT
CCGCTGCAAGCTTTCTAGACCAT
BO12289.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:30:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45065-RA | 1842 | CG45065-PA | 1..1839 | 17..1855 | 9195 | 100 | Plus |
| CG9518-RC | 2112 | CG9518-PC | 386..767 | 369..750 | 245 | 70.9 | Plus |
| CG9518-RB | 2112 | CG9518-PB | 386..767 | 369..750 | 245 | 70.9 | Plus |
| CG9518-RC | 2112 | CG9518-PC | 1678..1851 | 1655..1828 | 195 | 74.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:30:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45065-RA | 3359 | CG45065-RA | 1295..3135 | 15..1855 | 9205 | 100 | Plus |
| CG45064-RA | 3359 | CG45064-RA | 1295..3135 | 15..1855 | 9205 | 100 | Plus |
| CG9518-RC | 3952 | CG9518-RC | 1331..1712 | 369..750 | 245 | 70.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:30:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14875594..14877315 | 1855..134 | 8610 | 100 | Minus |
| X | 23542271 | X | 14877545..14877663 | 133..15 | 595 | 100 | Minus |
| X | 23542271 | X | 14865229..14865610 | 750..369 | 245 | 70.9 | Minus |
| X | 23542271 | X | 14864145..14864318 | 1828..1655 | 195 | 74.1 | Minus |
| X | 23542271 | X | 14921251..14921417 | 324..158 | 190 | 74.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:30:43 has no hits.
BO12289.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:20 Download gff for
BO12289.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9517-RB | 1..1842 | 17..1856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:28:56 Download gff for
BO12289.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9517-RB | 1300..3138 | 17..1857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:03 Download gff for
BO12289.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9517-RB | 1296..3134 | 17..1857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:20 Download gff for
BO12289.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9517-RB | 1298..3143 | 15..1863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:06 Download gff for
BO12289.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45064-RA | 1297..3135 | 17..1857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:06 Download gff for
BO12289.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14877545..14877661 | 17..133 | 100 | | Minus |
| X | 14875592..14877315 | 134..1857 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:03 Download gff for
BO12289.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14769625..14771348 | 134..1857 | 99 | <- | Minus |
| arm_X | 14771578..14771694 | 17..133 | 100 | | Minus |
BO12289.pep Sequence
Translation from 16 to 1873
> BO12289.pep
MAFGTMTSLLGMIPLLAIGMNFYRYQSVDPENKVQEPTVIRRQYDFVVIG
GGSAGAVVANRLSEVRNWTVLLLEAGGDETEISDVPALAGYLQLTELDWK
YQTTPSSTRQYCQAMKGDRCFWPRGKVLGGSSVLNAMVYVRGSKNDYNHW
ASLGNPGWDYDSMLKYFLKSEDVRNPYLAKTPYHETGGYLTVQEAPWRTP
LSIAFLQAGIEMGYENRDINGAQQTGFMLTQSTIRRGARCSTGKAFIRPV
RQRKNFDVLLHAEATRILFDKQKRAIGVEYMRGGRKNVVFVRREVIASAG
ALNTPKLLMLSGVGPAEHLQEHNIPVISDLPVGNNMQDHVGLGGLTFVVD
APLTVTRNRFQTIPVSMEYILRERGPMTFSGVEGVAFLNTKYQDPSVDWP
DVQFHFCPSSINSDGGEQIRKILNLRDGFYNTVYKPLQHSETWSILPLLL
RPKSTGWVRLNSRNPQHQPKIIPNYFAHQEDIDVLVEGIKLAINVSNTQA
FQRFGSRLHNIPLPGCRHLPFQSNEYWACCIKEFTFTIYHPAGTCRMGPS
WDVTAVVDPRLRVYGVSGVRVVDASIMPTIVNGNPNAPVIAIGEKASDLI
KEDWGVRRAHTSAASFLDH
BO12289.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:25:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45065-PA | 613 | CG45065-PA | 1..613 | 1..613 | 3255 | 100 | Plus |
| CG9518-PC | 703 | CG9518-PC | 16..617 | 3..604 | 1935 | 58.1 | Plus |
| CG9518-PB | 703 | CG9518-PB | 16..617 | 3..604 | 1935 | 58.1 | Plus |
| CG9518-PA | 703 | CG9518-PA | 16..617 | 3..604 | 1935 | 58.1 | Plus |
| CG9503-PA | 626 | CG9503-PA | 20..620 | 7..604 | 1819 | 55.1 | Plus |
