Clone Sequence Records
BO12291.3prime Sequence
413 bp (412 high quality bases) assembled on 2006-04-20
> BO12291.3prime
ATGGTCTAGAAAGCTTGCTCCGTAGAAACCACCACCGCTTGCGGAGGCGG
ATGAAGAGGCGGATGAGGAGGCCGCTCCGCCACCACCACCAGCTGCAGAG
GCTGACGAAGATGCGGAGGCAGAGGCAGCACCACCGCCACCACCGCGTCC
ACCGCCATGACGCCTGCCACCGCCGAATCCGCCGCCATAGGGATTACCGA
ATCCCCCGCCGTATGGACCACCTCCGAAACCGCCGCCATAAGGACCACCG
CCAAAGCCGCCGCCATATGGACCACCGCCAAAGCCACCGCCGTAGGGTCC
GCCGCCGAATCCGCCACCAAATCCTGGTCGTCCGAATCCAAATTGCGGTA
GGGCCGAAACGGCGGCCACCAGAAGAGCGAGAACAATCAGAGTCTTCATG
TCGACTGATAACT
BO12291.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7294-PA | 384 | CG7294-RA | 1..381 | 399..19 | 1905 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:14:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7294-RA | 538 | CG7294-RA | 76..456 | 399..19 | 1905 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:14:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10688816..10689196 | 19..399 | 1905 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:14:36 has no hits.
BO12291.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:37 Download gff for
BO12291.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7294-PA | 1..384 | 15..399 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:05:40 Download gff for
BO12291.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7294-PA | 1..384 | 15..399 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:53:24 Download gff for
BO12291.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7294-RA | 69..468 | 5..408 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:45:40 Download gff for
BO12291.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7294-RA | 69..468 | 5..408 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:45:40 Download gff for
BO12291.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10688804..10689201 | 5..408 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:53:24 Download gff for
BO12291.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10688804..10689201 | 5..408 | 97 | | Plus |
BO12291.5prime Sequence
413 bp (412 high quality bases) assembled on 2006-04-20
> BO12291.5prime
GAAGTTATCAGTCGACATGAAGACTCTGATTGTTCTCGCTCTTCTGGTGG
CCGCCGTTTCGGCCCTACCGCAATTTGGATTCGGACGACCAGGATTTGGT
GGCGGATTCGGCGGCGGACCCTACGGCGGTGGCTTTGGCGGTGGTCCATA
TGGCGGCGGCTTTGGCGGTGGTCCTTATGGCGGCGGTTTCGGAGGTGGTC
CATACGGCGGGGGATTCGGTAATCCCTATGGCGGCGGATTCGGCGGTGGC
AGGCGTCATGGCGGTGGACGCGGTGGTGGCGGTGGTGCTGCCTCTGCCTC
CGCATCTTCGTCAGCCTCTGCAGCTGGTGGTGGTGGCGGAGCGGCCTCCT
CATCCGCCTCTTCATCCGCCTCCGCAAGCGGTGGTGGTTTCTACGGAGCA
AGCTTTCTAGACC
BO12291.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7294-PA | 384 | CG7294-RA | 1..381 | 17..397 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:11:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7294-RA | 538 | CG7294-RA | 76..456 | 17..397 | 1905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:11:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10688816..10689196 | 397..17 | 1905 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:11:43 has no hits.
BO12291.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:38 Download gff for
BO12291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7294-PA | 1..384 | 17..401 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:05:41 Download gff for
BO12291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7294-PA | 1..384 | 17..401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:53:15 Download gff for
BO12291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7294-RA | 69..468 | 8..411 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:17:44 Download gff for
BO12291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7294-RA | 69..468 | 8..411 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:17:44 Download gff for
BO12291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10688804..10689201 | 8..411 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:53:15 Download gff for
BO12291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10688804..10689201 | 8..411 | 97 | | Minus |
BO12291.complete Sequence
415 bp assembled on 2006-10-11
GenBank Submission: FJ632395
> BO12291.complete
GAAGTTATCAGTCGACATGAAGACTCTGATTGTTCTCGCTCTTCTGGTGG
CCGCCGTTTCGGCCCTACCGCAATTTGGATTCGGACGACCAGGATTTGGT
GGCGGATTCGGCGGCGGACCCTACGGCGGTGGCTTTGGCGGTGGTCCATA
TGGCGGCGGCTTTGGCGGTGGTCCTTATGGCGGCGGTTTCGGAGGTGGTC
CATACGGCGGGGGATTCGGTAATCCCTATGGCGGCGGATTCGGCGGTGGC
AGGCGTCATGGCGGTGGACGCGGTGGTGGCGGTGGTGCTGCCTCTGCCTC
CGCATCTTCGTCAGCCTCTGCAGCTGGTGGTGGTGGCGGAGCGGCCTCCT
CATCCGCCTCTTCATCCGCCTCCGCAAGCGGTGGTGGTTTCTACGGAGCA
AGCTTTCTAGACCAT
BO12291.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:27:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7294-RA | 384 | CG7294-PA | 1..381 | 17..397 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:27:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7294-RA | 538 | CG7294-RA | 76..456 | 17..397 | 1905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:27:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10688816..10689196 | 397..17 | 1905 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:27:57 has no hits.
BO12291.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:16 Download gff for
BO12291.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7294-RA | 1..384 | 17..401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:19 Download gff for
BO12291.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7294-RA | 67..466 | 8..411 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:29 Download gff for
BO12291.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7294-RA | 76..456 | 17..399 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:16 Download gff for
BO12291.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7294-RA | 67..466 | 8..411 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:24 Download gff for
BO12291.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7294-RA | 76..456 | 17..399 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:24 Download gff for
BO12291.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10688814..10689196 | 17..399 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:29 Download gff for
BO12291.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10688814..10689196 | 17..399 | 99 | | Minus |
BO12291.pep Sequence
Translation from 16 to 415
> BO12291.pep
MKTLIVLALLVAAVSALPQFGFGRPGFGGGFGGGPYGGGFGGGPYGGGFG
GGPYGGGFGGGPYGGGFGNPYGGGFGGGRRHGGGRGGGGGAASASASSSA
SAAGGGGGAASSSASSSASASGGGFYGASFLDH
BO12291.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7294-PA | 127 | CG7294-PA | 1..127 | 1..127 | 689 | 100 | Plus |
| CG7296-PB | 161 | CG7296-PB | 1..161 | 1..127 | 368 | 58.9 | Plus |
| CG7296-PA | 161 | CG7296-PA | 1..161 | 1..127 | 368 | 58.9 | Plus |
| TwdlT-PA | 286 | CG5812-PA | 1..126 | 1..124 | 261 | 47 | Plus |
| CG17108-PA | 342 | CG17108-PA | 219..342 | 21..127 | 255 | 50.4 | Plus |
| TwdlT-PA | 286 | CG5812-PA | 43..129 | 21..95 | 218 | 56.2 | Plus |
| TwdlT-PA | 286 | CG5812-PA | 51..127 | 21..108 | 212 | 56.8 | Plus |
