Clone BO12292 Report

Search the DGRC for BO12292

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:122
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCG9416-RA
Protein status:BO12292.pep:
Sequenced Size:2617

Clone Sequence Records

BO12292.3prime Sequence

204 bp (163 high quality bases) assembled on 2006-04-20

> BO12292.3prime
ATGGTCTAGAAAGCTTGCAAGCTGCCAACTATTGTAGGATCCCAGCCAGG
AGCTAACATGCGCCCACGGCGGAAACGTGGCCAGGAACTCACGGAAATCC
TCCGTAATATACATGTCATCGTGTATTCGATGACCCATTAGGGCTATTTT
GAAAGTGCCTCCCGACCAATTTGGATCTTCGTGCTCGAATTCCAGTGAAA
ACTG

BO12292.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9416-PA 2586 CG9416-RA 2398..2583 204..19 930 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG9416-RB 2936 CG9416-RB 2517..2702 204..19 930 100 Minus
CG9416-RA 3076 CG9416-RA 2657..2842 204..19 930 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:51:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19367482..19367652 19..189 840 99.4 Plus
Blast to na_te.dros performed on 2015-02-11 04:51:27 has no hits.

BO12292.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:39 Download gff for BO12292.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9416-PA 2398..2586 15..204 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:05:43 Download gff for BO12292.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9416-PA 2398..2586 15..204 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 23:29:32 Download gff for BO12292.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9416-RA 2657..2846 14..204 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:28:15 Download gff for BO12292.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9416-RA 2657..2846 14..204 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:28:15 Download gff for BO12292.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19367478..19367646 14..183 98 <- Plus
2R 19367708..19367728 184..204 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 23:29:32 Download gff for BO12292.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15254983..15255151 14..183 98 <- Plus
arm_2R 15255213..15255233 184..204 100   Plus

BO12292.5prime Sequence

847 bp (820 high quality bases) assembled on 2006-04-20

> BO12292.5prime
GAAGTTATCAGTCGACATGAAATCAAAGTACGAAAACATGAAGATCATCT
ACAATCGCAGCAAGATCGGCTGGTACTGGGCTCCGTTGTTCGTATCATGC
TGGTTTCTGCTCTTCTATCTGGTGGTAATACCCAGCTTCCATCGCATGCC
GCAGCTAAAGACGCTCGAGGATGAGCGCCAGCAGCCGGGTCAGTTCATCG
GGGAGCGGGCGGAGAACACCCTTCTGAGGCTTTCCAAGATTGGACCCAAG
GTCGTGGGCAGTGCGGCCAACGAACAGGTGGCTGTTCAGTTTCTTCTCAG
CGAGATAGGTGACATCATCGACGATGCTCGAACGGATCTCTACGATATCG
AGAAGGATGTTCAGGTTGCCTCCGGTAACTATCTTCTCTGGTCCATGGTC
AATGTCTATCAGAGCATTCAGAATGTGGTGGTCAAGCTATCGCCGAAGAA
TGCAACCAGTGAAGCTGCTCTTTTGATCAATTCCCACTTCGATTCGGTGC
CGGGAAGCTCGGGTGCCGGAGACGCCGGAATGATGTGCGTGATTATGTTG
GAAGTTCTCCGGGTTATCACGAAATACGAGACCCCACTAACCTACTCGGT
TGTATTCCTCTTCAACGGAGCCGAGGAGAATCCACTGCAGGGCAGCCATG
CATTCATCACCCAACATCCTTGGGCCCAAAACATTAGAGCGGTCATTAAT
TTGGACTCGGCTGGCAGTGGAGGACGAGAAATTCTATTTCAATCCGGACC
CGATCATCCTTGGCTCATGAAGTACTATGGCAAAAACATAGTTCATCCGT
TTGCCTCCACTATCGGTGAGGAATTGTTCCAAATGGCTTTGTTCCCT

BO12292.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG9416-PA 2586 CG9416-RA 1..817 17..833 4085 100 Plus
CG11961-PB 2604 CG11961-RB 360..429 355..424 150 88.5 Plus
CG11961-PA 2676 CG11961-RA 432..501 355..424 150 88.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:11:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9416-RB 2936 CG9416-RB 120..951 17..847 4135 99.9 Plus
CG9416-RA 3076 CG9416-RA 260..1091 17..847 4135 99.9 Plus
CG10062-RD 2777 CG10062-RD 650..833 600..783 245 76.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:11:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19369944..19370614 687..17 3355 100 Minus
2R 25286936 2R 19369798..19369886 772..684 445 100 Minus
2R 25286936 2R 19369661..19369739 847..770 345 98.7 Minus
2R 25286936 2R 19359499..19359581 342..424 235 85.5 Plus
Blast to na_te.dros performed on 2015-02-11 10:11:35 has no hits.

BO12292.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:40 Download gff for BO12292.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9416-PA 1..832 17..847 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:05:44 Download gff for BO12292.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9416-PA 1..832 17..847 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:53:13 Download gff for BO12292.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9416-RA 252..1091 10..847 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:17:34 Download gff for BO12292.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9416-RA 252..1091 10..847 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:17:34 Download gff for BO12292.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19369661..19369736 773..847 98 <- Minus
2R 19369798..19369882 688..772 100 <- Minus
2R 19369944..19370625 5..687 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:53:13 Download gff for BO12292.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15257166..15257241 773..847 98 <- Minus
arm_2R 15257303..15257387 688..772 100 <- Minus
arm_2R 15257449..15258130 5..687 99   Minus

BO12292.complete Sequence

2617 bp assembled on 2008-01-17

GenBank Submission: FJ632396

> BO12292.complete
GAAGTTATCAGTCGACATGAAATCAAAGTACGAAAACATGAAGATCATCT
ACAATCGCAGCAAGATCGGCTGGTACTGGGCTCCGTTGTTCGTATCATGC
TGGTTTCTGCTCTTCTATCTGGTGGTAATACCCAGCTTCCATCGCATGCC
GCAGCTAAAGACGCTCGAGGATGAGCGCCAGCAGCCGGGTCAGTTCATCG
GGGAGCGGGCGGAGAACACCCTTCTGAGGCTTTCCAAGATTGGACCCAAG
GTCGTGGGCAGTGCGGCCAACGAACAGGTGGCTGTTCAGTTTCTTCTCAG
CGAGATAGGTGACATCATCGACGATGCTCGAACGGATCTCTACGATATCG
AGAAGGATGTTCAGGTTGCCTCCGGTAACTATCTTCTCTGGTCCATGGTC
AATGTCTATCAGAGCATTCAGAATGTGGTGGTCAAGCTATCGCCGAAGAA
TGCAACCAGTGAAGCTGCTCTTTTGATCAATTCCCACTTCGATTCGGTGC
CGGGAAGCTCGGGTGCCGGAGACGCCGGAATGATGTGCGTGATTATGTTG
GAAGTTCTCCGGGTTATCACGAAATACGAGACCCCACTAACCTACTCGGT
TGTATTCCTCTTCAACGGAGCCGAGGAGAATCCACTGCAGGGCAGCCATG
CATTCATCACCCAACATCCTTGGGCCCAAAACATTAGAGCGGTCATTAAT
TTGGACTCGGCTGGCAGTGGAGGACGAGAAATTCTATTTCAATCCGGACC
CGATCATCCTTGGCTCATGAAGTACTATGGCAAAAACATAGTTCATCCGT
TTGCCTCCACTATCGGTGAGGAATTGTTCCAAAATGGCTTTGTTCCCTCA
GAGACCGATTATCGCGTGTTCCGTGACTACGGCCATATACCCGGTCTCGA
TATGGCACAGACTTTGAATGGCTATGTATACCATACCAAATATGATCGCT
TTAATCTCATCCCGCGGCGAACTTACCAATTGACTGGTGAAAATATTTTG
GCTCTGGTCAAGGCCCTGGCCAACGCAGAAGAACTGGAGAATCCATCGAA
ATACGCCGAGGGACACATGATATTCTTCGACATGATGGGCTGGTTCTTTG
TCTATTATCCGGAGACCACGGGCATTATCATCAACATTACCGTGTGTGTC
CTGGTCTGCGTCACCATCGTATTGTACATCTGGATGATGTCCAGCAGTAC
GGGCATGTTCCGACGACGAATCTGGGCAAAGTTTGGCATTCTGGCCGCTC
TCCAGTTGGCTGGAGTTGCTCTGGGCATTGGTCTGGTCATATCGATAGCC
CTGTTCCTGGACGCGGTGAATCTACCGATGTCCTGGTTTTCGCAAAACTG
GATGCTCTTCGGCTTGTACTTCTGCCCCATGATTTTTGGTATGGGCATTG
TGCCAGCTATTTACTTTAGTCGCACTAAAGAGCATGGTTTACCCCTGGGC
TATGGCATTCAACTATTGATGCATTCGCATTGCCTGATCTTGACCATTAT
CACCGCCATAATGGTGAGCTATAGTATTCGTTCCGCCTTTGTCATAATGC
TCTGCATCGGCTTCTACACTCTGTCCGTGCTGATCAATTTGGTAACTAAG
GCACACAAAACAAATTTCCTGTGGCTCATACCGCACTGCATTTGCCAGGT
GCTGCCATTCATGTTCTATACTTACTGCTGCTATGCCTTCTATGTGGTTT
TTGTGCCCATGCAGGGACGCGAGTGTAATACAAATCCGGAGATTCTAATG
GGTTTCTTTACGGCGCTAATGGTTCTACTATTTGCACCCTTTCTGGTGCC
CTTGTTCTGTCTGTTCCGCAAGTCCAAGACAATTATCTCAATGTTTGGCA
TCTGCACGATAGTGTTTATCATATTTGCCGCAACACCGATTGCCTTTCCT
TACGCCGAGAAGACGGCGCCCCAAAGATTCTTCGCTGTGCACACAGCAAG
AACCTTCCACAATGGCGATCCAGCGAGCACAGTGAGTCATAAGGACTCGG
GATACTTTGTCCTTCCGGTCGATCGACGTCCTCACACCGTGGATGATATT
CTCTTTGAAAACACAAACTTTACAAAGTCAGAACGTATTGATTGTGACTC
GGAGCTCATGTGCGGATTTCCCATTTACAGCTCACGCTGGTTAAATGCAG
TTGATAACAGCTATTTTGTTCCTGGTCCCGAGCCAAATAGGGAATATATT
CCCACTCTGACTATTTTGGAAAAATCGAGTAATTCAGATACAAATATTAG
GTTTGATCTTGAGATCTCAGGACCGGATCACACGAGCATATTCATTCTGC
CCTTAAACGATAGCAAATTGGTGGATTGGTCCTTCATTAGGGATCCGCTG
GATGGAAATGTAAAGCCACCATACTACGTGTACTGGTCATATGCATTAGA
TCCCAAACCCTTGCAGTTTTCACTGGAATTCGAGCACGAAGATCCAAATT
GGTCGGGAGGCACTTTCAAAATAGCCCTAATGGGTCATCGAATACACGAT
GACATGTATATTACGGAGGATTTCCGTGAGTTCCTGGCCACGTTTCCGCC
GTGGGCGCATGTTAGCTCCTGGCTGGGATCCTACAATAGTTGGCAGCTTG
CAAGCTTTCTAGACCAT

BO12292.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9416-RB 2586 CG9416-PB 1..2583 17..2599 12915 100 Plus
CG9416-RA 2586 CG9416-PA 1..2583 17..2599 12915 100 Plus
CG11961-RC 2676 CG11961-PC 419..501 342..424 235 85.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG9416-RB 2936 CG9416-RB 120..2702 17..2599 12915 100 Plus
CG9416-RA 3076 CG9416-RA 260..2842 17..2599 12915 100 Plus
CG11961-RC 3589 CG11961-RC 499..581 342..424 235 85.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19369944..19370614 687..17 3355 100 Minus
2R 25286936 2R 19368955..19369339 1432..1048 1925 100 Minus
2R 25286936 2R 19368322..19368647 1939..1614 1630 100 Minus
2R 25286936 2R 19367708..19367990 2434..2152 1415 100 Minus
2R 25286936 2R 19368048..19368260 2151..1939 1065 100 Minus
2R 25286936 2R 19368711..19368893 1613..1431 915 100 Minus
2R 25286936 2R 19367482..19367652 2599..2429 840 99.4 Minus
2R 25286936 2R 19369404..19369559 1048..893 780 100 Minus
2R 25286936 2R 19369614..19369739 895..770 630 100 Minus
2R 25286936 2R 19369798..19369886 772..684 445 100 Minus
2R 25286936 2R 19359499..19359581 342..424 235 85.5 Plus
Blast to na_te.dros performed on 2014-11-27 14:24:29 has no hits.

BO12292.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:21 Download gff for BO12292.complete
Subject Subject Range Query Range Percent Splice Strand
CG9416-RA 1..2586 17..2603 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:33 Download gff for BO12292.complete
Subject Subject Range Query Range Percent Splice Strand
CG9416-RA 259..2841 17..2601 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:12 Download gff for BO12292.complete
Subject Subject Range Query Range Percent Splice Strand
CG9416-RA 260..2842 17..2601 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:21 Download gff for BO12292.complete
Subject Subject Range Query Range Percent Splice Strand
CG9416-RA 251..2845 10..2604 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:50 Download gff for BO12292.complete
Subject Subject Range Query Range Percent Splice Strand
CG9416-RA 260..2842 17..2601 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:50 Download gff for BO12292.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19367480..19367646 2435..2601 98 <- Minus
2R 19367708..19367990 2152..2434 100 <- Minus
2R 19368048..19368259 1940..2151 100 <- Minus
2R 19368322..19368647 1614..1939 100 <- Minus
2R 19368711..19368891 1433..1613 100 <- Minus
2R 19368955..19369338 1049..1432 100 <- Minus
2R 19369404..19369558 894..1048 100 <- Minus
2R 19369616..19369736 773..893 100 <- Minus
2R 19369798..19369882 688..772 100 <- Minus
2R 19369944..19370614 17..687 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:12 Download gff for BO12292.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15255213..15255495 2152..2434 100 <- Minus
arm_2R 15255553..15255764 1940..2151 100 <- Minus
arm_2R 15254985..15255151 2435..2601 98 <- Minus
arm_2R 15255827..15256152 1614..1939 100 <- Minus
arm_2R 15256216..15256396 1433..1613 100 <- Minus
arm_2R 15256460..15256843 1049..1432 100 <- Minus
arm_2R 15256909..15257063 894..1048 100 <- Minus
arm_2R 15257121..15257241 773..893 100 <- Minus
arm_2R 15257303..15257387 688..772 100 <- Minus
arm_2R 15257449..15258119 17..687 100   Minus

BO12292.pep Sequence

Translation from 16 to 2617

> BO12292.pep
MKSKYENMKIIYNRSKIGWYWAPLFVSCWFLLFYLVVIPSFHRMPQLKTL
EDERQQPGQFIGERAENTLLRLSKIGPKVVGSAANEQVAVQFLLSEIGDI
IDDARTDLYDIEKDVQVASGNYLLWSMVNVYQSIQNVVVKLSPKNATSEA
ALLINSHFDSVPGSSGAGDAGMMCVIMLEVLRVITKYETPLTYSVVFLFN
GAEENPLQGSHAFITQHPWAQNIRAVINLDSAGSGGREILFQSGPDHPWL
MKYYGKNIVHPFASTIGEELFQNGFVPSETDYRVFRDYGHIPGLDMAQTL
NGYVYHTKYDRFNLIPRRTYQLTGENILALVKALANAEELENPSKYAEGH
MIFFDMMGWFFVYYPETTGIIINITVCVLVCVTIVLYIWMMSSSTGMFRR
RIWAKFGILAALQLAGVALGIGLVISIALFLDAVNLPMSWFSQNWMLFGL
YFCPMIFGMGIVPAIYFSRTKEHGLPLGYGIQLLMHSHCLILTIITAIMV
SYSIRSAFVIMLCIGFYTLSVLINLVTKAHKTNFLWLIPHCICQVLPFMF
YTYCCYAFYVVFVPMQGRECNTNPEILMGFFTALMVLLFAPFLVPLFCLF
RKSKTIISMFGICTIVFIIFAATPIAFPYAEKTAPQRFFAVHTARTFHNG
DPASTVSHKDSGYFVLPVDRRPHTVDDILFENTNFTKSERIDCDSELMCG
FPIYSSRWLNAVDNSYFVPGPEPNREYIPTLTILEKSSNSDTNIRFDLEI
SGPDHTSIFILPLNDSKLVDWSFIRDPLDGNVKPPYYVYWSYALDPKPLQ
FSLEFEHEDPNWSGGTFKIALMGHRIHDDMYITEDFREFLATFPPWAHVS
SWLGSYNSWQLASFLDH

BO12292.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:25:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG9416-PB 861 CG9416-PB 1..861 1..861 4599 100 Plus
CG9416-PA 861 CG9416-PA 1..861 1..861 4599 100 Plus
CG11961-PB 867 CG11961-PB 25..864 15..858 2211 49.3 Plus
CG11961-PC 891 CG11961-PC 49..888 15..858 2211 49.3 Plus
CG11961-PA 891 CG11961-PA 49..888 15..858 2211 49.3 Plus