Clone Sequence Records
BO12292.3prime Sequence
204 bp (163 high quality bases) assembled on 2006-04-20
> BO12292.3prime
ATGGTCTAGAAAGCTTGCAAGCTGCCAACTATTGTAGGATCCCAGCCAGG
AGCTAACATGCGCCCACGGCGGAAACGTGGCCAGGAACTCACGGAAATCC
TCCGTAATATACATGTCATCGTGTATTCGATGACCCATTAGGGCTATTTT
GAAAGTGCCTCCCGACCAATTTGGATCTTCGTGCTCGAATTCCAGTGAAA
ACTG
BO12292.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9416-PA | 2586 | CG9416-RA | 2398..2583 | 204..19 | 930 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:51:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9416-RB | 2936 | CG9416-RB | 2517..2702 | 204..19 | 930 | 100 | Minus |
CG9416-RA | 3076 | CG9416-RA | 2657..2842 | 204..19 | 930 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:51:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19367482..19367652 | 19..189 | 840 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:51:27 has no hits.
BO12292.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:39 Download gff for
BO12292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9416-PA | 2398..2586 | 15..204 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:05:43 Download gff for
BO12292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9416-PA | 2398..2586 | 15..204 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 23:29:32 Download gff for
BO12292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9416-RA | 2657..2846 | 14..204 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:28:15 Download gff for
BO12292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9416-RA | 2657..2846 | 14..204 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:28:15 Download gff for
BO12292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19367478..19367646 | 14..183 | 98 | <- | Plus |
2R | 19367708..19367728 | 184..204 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 23:29:32 Download gff for
BO12292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15254983..15255151 | 14..183 | 98 | <- | Plus |
arm_2R | 15255213..15255233 | 184..204 | 100 | | Plus |
BO12292.5prime Sequence
847 bp (820 high quality bases) assembled on 2006-04-20
> BO12292.5prime
GAAGTTATCAGTCGACATGAAATCAAAGTACGAAAACATGAAGATCATCT
ACAATCGCAGCAAGATCGGCTGGTACTGGGCTCCGTTGTTCGTATCATGC
TGGTTTCTGCTCTTCTATCTGGTGGTAATACCCAGCTTCCATCGCATGCC
GCAGCTAAAGACGCTCGAGGATGAGCGCCAGCAGCCGGGTCAGTTCATCG
GGGAGCGGGCGGAGAACACCCTTCTGAGGCTTTCCAAGATTGGACCCAAG
GTCGTGGGCAGTGCGGCCAACGAACAGGTGGCTGTTCAGTTTCTTCTCAG
CGAGATAGGTGACATCATCGACGATGCTCGAACGGATCTCTACGATATCG
AGAAGGATGTTCAGGTTGCCTCCGGTAACTATCTTCTCTGGTCCATGGTC
AATGTCTATCAGAGCATTCAGAATGTGGTGGTCAAGCTATCGCCGAAGAA
TGCAACCAGTGAAGCTGCTCTTTTGATCAATTCCCACTTCGATTCGGTGC
CGGGAAGCTCGGGTGCCGGAGACGCCGGAATGATGTGCGTGATTATGTTG
GAAGTTCTCCGGGTTATCACGAAATACGAGACCCCACTAACCTACTCGGT
TGTATTCCTCTTCAACGGAGCCGAGGAGAATCCACTGCAGGGCAGCCATG
CATTCATCACCCAACATCCTTGGGCCCAAAACATTAGAGCGGTCATTAAT
TTGGACTCGGCTGGCAGTGGAGGACGAGAAATTCTATTTCAATCCGGACC
CGATCATCCTTGGCTCATGAAGTACTATGGCAAAAACATAGTTCATCCGT
TTGCCTCCACTATCGGTGAGGAATTGTTCCAAATGGCTTTGTTCCCT
BO12292.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9416-PA | 2586 | CG9416-RA | 1..817 | 17..833 | 4085 | 100 | Plus |
CG11961-PB | 2604 | CG11961-RB | 360..429 | 355..424 | 150 | 88.5 | Plus |
CG11961-PA | 2676 | CG11961-RA | 432..501 | 355..424 | 150 | 88.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:11:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9416-RB | 2936 | CG9416-RB | 120..951 | 17..847 | 4135 | 99.9 | Plus |
CG9416-RA | 3076 | CG9416-RA | 260..1091 | 17..847 | 4135 | 99.9 | Plus |
CG10062-RD | 2777 | CG10062-RD | 650..833 | 600..783 | 245 | 76.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:11:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19369944..19370614 | 687..17 | 3355 | 100 | Minus |
2R | 25286936 | 2R | 19369798..19369886 | 772..684 | 445 | 100 | Minus |
2R | 25286936 | 2R | 19369661..19369739 | 847..770 | 345 | 98.7 | Minus |
2R | 25286936 | 2R | 19359499..19359581 | 342..424 | 235 | 85.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:11:35 has no hits.
BO12292.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:40 Download gff for
BO12292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9416-PA | 1..832 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:05:44 Download gff for
BO12292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9416-PA | 1..832 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:53:13 Download gff for
BO12292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9416-RA | 252..1091 | 10..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:17:34 Download gff for
BO12292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9416-RA | 252..1091 | 10..847 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:17:34 Download gff for
BO12292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19369661..19369736 | 773..847 | 98 | <- | Minus |
2R | 19369798..19369882 | 688..772 | 100 | <- | Minus |
2R | 19369944..19370625 | 5..687 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:53:13 Download gff for
BO12292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15257166..15257241 | 773..847 | 98 | <- | Minus |
arm_2R | 15257303..15257387 | 688..772 | 100 | <- | Minus |
arm_2R | 15257449..15258130 | 5..687 | 99 | | Minus |
BO12292.complete Sequence
2617 bp assembled on 2008-01-17
GenBank Submission: FJ632396
> BO12292.complete
GAAGTTATCAGTCGACATGAAATCAAAGTACGAAAACATGAAGATCATCT
ACAATCGCAGCAAGATCGGCTGGTACTGGGCTCCGTTGTTCGTATCATGC
TGGTTTCTGCTCTTCTATCTGGTGGTAATACCCAGCTTCCATCGCATGCC
GCAGCTAAAGACGCTCGAGGATGAGCGCCAGCAGCCGGGTCAGTTCATCG
GGGAGCGGGCGGAGAACACCCTTCTGAGGCTTTCCAAGATTGGACCCAAG
GTCGTGGGCAGTGCGGCCAACGAACAGGTGGCTGTTCAGTTTCTTCTCAG
CGAGATAGGTGACATCATCGACGATGCTCGAACGGATCTCTACGATATCG
AGAAGGATGTTCAGGTTGCCTCCGGTAACTATCTTCTCTGGTCCATGGTC
AATGTCTATCAGAGCATTCAGAATGTGGTGGTCAAGCTATCGCCGAAGAA
TGCAACCAGTGAAGCTGCTCTTTTGATCAATTCCCACTTCGATTCGGTGC
CGGGAAGCTCGGGTGCCGGAGACGCCGGAATGATGTGCGTGATTATGTTG
GAAGTTCTCCGGGTTATCACGAAATACGAGACCCCACTAACCTACTCGGT
TGTATTCCTCTTCAACGGAGCCGAGGAGAATCCACTGCAGGGCAGCCATG
CATTCATCACCCAACATCCTTGGGCCCAAAACATTAGAGCGGTCATTAAT
TTGGACTCGGCTGGCAGTGGAGGACGAGAAATTCTATTTCAATCCGGACC
CGATCATCCTTGGCTCATGAAGTACTATGGCAAAAACATAGTTCATCCGT
TTGCCTCCACTATCGGTGAGGAATTGTTCCAAAATGGCTTTGTTCCCTCA
GAGACCGATTATCGCGTGTTCCGTGACTACGGCCATATACCCGGTCTCGA
TATGGCACAGACTTTGAATGGCTATGTATACCATACCAAATATGATCGCT
TTAATCTCATCCCGCGGCGAACTTACCAATTGACTGGTGAAAATATTTTG
GCTCTGGTCAAGGCCCTGGCCAACGCAGAAGAACTGGAGAATCCATCGAA
ATACGCCGAGGGACACATGATATTCTTCGACATGATGGGCTGGTTCTTTG
TCTATTATCCGGAGACCACGGGCATTATCATCAACATTACCGTGTGTGTC
CTGGTCTGCGTCACCATCGTATTGTACATCTGGATGATGTCCAGCAGTAC
GGGCATGTTCCGACGACGAATCTGGGCAAAGTTTGGCATTCTGGCCGCTC
TCCAGTTGGCTGGAGTTGCTCTGGGCATTGGTCTGGTCATATCGATAGCC
CTGTTCCTGGACGCGGTGAATCTACCGATGTCCTGGTTTTCGCAAAACTG
GATGCTCTTCGGCTTGTACTTCTGCCCCATGATTTTTGGTATGGGCATTG
TGCCAGCTATTTACTTTAGTCGCACTAAAGAGCATGGTTTACCCCTGGGC
TATGGCATTCAACTATTGATGCATTCGCATTGCCTGATCTTGACCATTAT
CACCGCCATAATGGTGAGCTATAGTATTCGTTCCGCCTTTGTCATAATGC
TCTGCATCGGCTTCTACACTCTGTCCGTGCTGATCAATTTGGTAACTAAG
GCACACAAAACAAATTTCCTGTGGCTCATACCGCACTGCATTTGCCAGGT
GCTGCCATTCATGTTCTATACTTACTGCTGCTATGCCTTCTATGTGGTTT
TTGTGCCCATGCAGGGACGCGAGTGTAATACAAATCCGGAGATTCTAATG
GGTTTCTTTACGGCGCTAATGGTTCTACTATTTGCACCCTTTCTGGTGCC
CTTGTTCTGTCTGTTCCGCAAGTCCAAGACAATTATCTCAATGTTTGGCA
TCTGCACGATAGTGTTTATCATATTTGCCGCAACACCGATTGCCTTTCCT
TACGCCGAGAAGACGGCGCCCCAAAGATTCTTCGCTGTGCACACAGCAAG
AACCTTCCACAATGGCGATCCAGCGAGCACAGTGAGTCATAAGGACTCGG
GATACTTTGTCCTTCCGGTCGATCGACGTCCTCACACCGTGGATGATATT
CTCTTTGAAAACACAAACTTTACAAAGTCAGAACGTATTGATTGTGACTC
GGAGCTCATGTGCGGATTTCCCATTTACAGCTCACGCTGGTTAAATGCAG
TTGATAACAGCTATTTTGTTCCTGGTCCCGAGCCAAATAGGGAATATATT
CCCACTCTGACTATTTTGGAAAAATCGAGTAATTCAGATACAAATATTAG
GTTTGATCTTGAGATCTCAGGACCGGATCACACGAGCATATTCATTCTGC
CCTTAAACGATAGCAAATTGGTGGATTGGTCCTTCATTAGGGATCCGCTG
GATGGAAATGTAAAGCCACCATACTACGTGTACTGGTCATATGCATTAGA
TCCCAAACCCTTGCAGTTTTCACTGGAATTCGAGCACGAAGATCCAAATT
GGTCGGGAGGCACTTTCAAAATAGCCCTAATGGGTCATCGAATACACGAT
GACATGTATATTACGGAGGATTTCCGTGAGTTCCTGGCCACGTTTCCGCC
GTGGGCGCATGTTAGCTCCTGGCTGGGATCCTACAATAGTTGGCAGCTTG
CAAGCTTTCTAGACCAT
BO12292.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:24:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9416-RB | 2586 | CG9416-PB | 1..2583 | 17..2599 | 12915 | 100 | Plus |
CG9416-RA | 2586 | CG9416-PA | 1..2583 | 17..2599 | 12915 | 100 | Plus |
CG11961-RC | 2676 | CG11961-PC | 419..501 | 342..424 | 235 | 85.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9416-RB | 2936 | CG9416-RB | 120..2702 | 17..2599 | 12915 | 100 | Plus |
CG9416-RA | 3076 | CG9416-RA | 260..2842 | 17..2599 | 12915 | 100 | Plus |
CG11961-RC | 3589 | CG11961-RC | 499..581 | 342..424 | 235 | 85.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19369944..19370614 | 687..17 | 3355 | 100 | Minus |
2R | 25286936 | 2R | 19368955..19369339 | 1432..1048 | 1925 | 100 | Minus |
2R | 25286936 | 2R | 19368322..19368647 | 1939..1614 | 1630 | 100 | Minus |
2R | 25286936 | 2R | 19367708..19367990 | 2434..2152 | 1415 | 100 | Minus |
2R | 25286936 | 2R | 19368048..19368260 | 2151..1939 | 1065 | 100 | Minus |
2R | 25286936 | 2R | 19368711..19368893 | 1613..1431 | 915 | 100 | Minus |
2R | 25286936 | 2R | 19367482..19367652 | 2599..2429 | 840 | 99.4 | Minus |
2R | 25286936 | 2R | 19369404..19369559 | 1048..893 | 780 | 100 | Minus |
2R | 25286936 | 2R | 19369614..19369739 | 895..770 | 630 | 100 | Minus |
2R | 25286936 | 2R | 19369798..19369886 | 772..684 | 445 | 100 | Minus |
2R | 25286936 | 2R | 19359499..19359581 | 342..424 | 235 | 85.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:24:29 has no hits.
BO12292.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:21 Download gff for
BO12292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9416-RA | 1..2586 | 17..2603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:33 Download gff for
BO12292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9416-RA | 259..2841 | 17..2601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:12 Download gff for
BO12292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9416-RA | 260..2842 | 17..2601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:21 Download gff for
BO12292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9416-RA | 251..2845 | 10..2604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:50 Download gff for
BO12292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9416-RA | 260..2842 | 17..2601 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:50 Download gff for
BO12292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19367480..19367646 | 2435..2601 | 98 | <- | Minus |
2R | 19367708..19367990 | 2152..2434 | 100 | <- | Minus |
2R | 19368048..19368259 | 1940..2151 | 100 | <- | Minus |
2R | 19368322..19368647 | 1614..1939 | 100 | <- | Minus |
2R | 19368711..19368891 | 1433..1613 | 100 | <- | Minus |
2R | 19368955..19369338 | 1049..1432 | 100 | <- | Minus |
2R | 19369404..19369558 | 894..1048 | 100 | <- | Minus |
2R | 19369616..19369736 | 773..893 | 100 | <- | Minus |
2R | 19369798..19369882 | 688..772 | 100 | <- | Minus |
2R | 19369944..19370614 | 17..687 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:12 Download gff for
BO12292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15255213..15255495 | 2152..2434 | 100 | <- | Minus |
arm_2R | 15255553..15255764 | 1940..2151 | 100 | <- | Minus |
arm_2R | 15254985..15255151 | 2435..2601 | 98 | <- | Minus |
arm_2R | 15255827..15256152 | 1614..1939 | 100 | <- | Minus |
arm_2R | 15256216..15256396 | 1433..1613 | 100 | <- | Minus |
arm_2R | 15256460..15256843 | 1049..1432 | 100 | <- | Minus |
arm_2R | 15256909..15257063 | 894..1048 | 100 | <- | Minus |
arm_2R | 15257121..15257241 | 773..893 | 100 | <- | Minus |
arm_2R | 15257303..15257387 | 688..772 | 100 | <- | Minus |
arm_2R | 15257449..15258119 | 17..687 | 100 | | Minus |
BO12292.pep Sequence
Translation from 16 to 2617
> BO12292.pep
MKSKYENMKIIYNRSKIGWYWAPLFVSCWFLLFYLVVIPSFHRMPQLKTL
EDERQQPGQFIGERAENTLLRLSKIGPKVVGSAANEQVAVQFLLSEIGDI
IDDARTDLYDIEKDVQVASGNYLLWSMVNVYQSIQNVVVKLSPKNATSEA
ALLINSHFDSVPGSSGAGDAGMMCVIMLEVLRVITKYETPLTYSVVFLFN
GAEENPLQGSHAFITQHPWAQNIRAVINLDSAGSGGREILFQSGPDHPWL
MKYYGKNIVHPFASTIGEELFQNGFVPSETDYRVFRDYGHIPGLDMAQTL
NGYVYHTKYDRFNLIPRRTYQLTGENILALVKALANAEELENPSKYAEGH
MIFFDMMGWFFVYYPETTGIIINITVCVLVCVTIVLYIWMMSSSTGMFRR
RIWAKFGILAALQLAGVALGIGLVISIALFLDAVNLPMSWFSQNWMLFGL
YFCPMIFGMGIVPAIYFSRTKEHGLPLGYGIQLLMHSHCLILTIITAIMV
SYSIRSAFVIMLCIGFYTLSVLINLVTKAHKTNFLWLIPHCICQVLPFMF
YTYCCYAFYVVFVPMQGRECNTNPEILMGFFTALMVLLFAPFLVPLFCLF
RKSKTIISMFGICTIVFIIFAATPIAFPYAEKTAPQRFFAVHTARTFHNG
DPASTVSHKDSGYFVLPVDRRPHTVDDILFENTNFTKSERIDCDSELMCG
FPIYSSRWLNAVDNSYFVPGPEPNREYIPTLTILEKSSNSDTNIRFDLEI
SGPDHTSIFILPLNDSKLVDWSFIRDPLDGNVKPPYYVYWSYALDPKPLQ
FSLEFEHEDPNWSGGTFKIALMGHRIHDDMYITEDFREFLATFPPWAHVS
SWLGSYNSWQLASFLDH
BO12292.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:25:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9416-PB | 861 | CG9416-PB | 1..861 | 1..861 | 4599 | 100 | Plus |
CG9416-PA | 861 | CG9416-PA | 1..861 | 1..861 | 4599 | 100 | Plus |
CG11961-PB | 867 | CG11961-PB | 25..864 | 15..858 | 2211 | 49.3 | Plus |
CG11961-PC | 891 | CG11961-PC | 49..888 | 15..858 | 2211 | 49.3 | Plus |
CG11961-PA | 891 | CG11961-PA | 49..888 | 15..858 | 2211 | 49.3 | Plus |