Clone Sequence Records
BO12301.3prime Sequence
476 bp (475 high quality bases) assembled on 2006-04-20
> BO12301.3prime
ATGGTCTAGAAAGCTTGCGTTGTAGCTTAGGGCAAACTGGTTGACCTTCT
GTACATCGCCCCACACCTGTACAGCCTGGATGTCGGACAGGGAGAAGAGA
GTCTCGTACTCGGTTATGAAATTGTGGCCCGAATCCCTACCCTGGTACAC
CCGCATCATTGAATTTGCGTAGTCGAAGGCGAACTCAAGGCAAAAGGAGG
ACTCGTCGAAGATGTTCAGGTACTTCTCCTGGTGCAGGCTGCTCCACTCG
CCGTTCCGCTTATAATTCTCGATAATCGTCTGTGTGGGAATCACCACCTT
GAAGTGGTATGTGATGTTGTCCGTGCAGTCCGGACTGTTGACAAAGTTCA
CCGAGAATTGCTGGGGATCCTGGAGCAGGTTGCCGCTGATGGACAGCCGG
GTTACTCGATCCGAGGTACTGGCATTGGTGGGCAGCACGGCAAAGAACTT
CACATCAGGCATGTCGACTGATAACT
BO12301.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14879-PB | 447 | CG14879-RB | 1..444 | 462..19 | 2220 | 100 | Minus |
| CG14879-PA | 540 | CG14879-RA | 1..259 | 462..204 | 1295 | 100 | Minus |
| CG14879-PA | 540 | CG14879-RA | 352..537 | 204..19 | 930 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:52:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14879-RB | 1749 | CG14879-RB | 343..786 | 462..19 | 2220 | 100 | Minus |
| CG14879-RD | 1093 | CG14879-RD | 343..601 | 462..204 | 1295 | 100 | Minus |
| CG14879-RC | 1041 | CG14879-RC | 343..601 | 462..204 | 1295 | 100 | Minus |
| CG14879-RD | 1093 | CG14879-RD | 694..879 | 204..19 | 930 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:52:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16347096..16347281 | 19..204 | 930 | 100 | Plus |
| 3R | 32079331 | 3R | 16347374..16347528 | 204..358 | 775 | 100 | Plus |
| 3R | 32079331 | 3R | 16348781..16348884 | 359..462 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:52:48 has no hits.
BO12301.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:47 Download gff for
BO12301.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14879-PB | 1..447 | 16..462 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:05:56 Download gff for
BO12301.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14879-PB | 1..447 | 16..462 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:04:59 Download gff for
BO12301.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14879-RB | 343..786 | 19..462 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:44:43 Download gff for
BO12301.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14879-RB | 343..786 | 19..462 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:44:43 Download gff for
BO12301.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16348781..16348884 | 359..462 | 100 | | Plus |
| 3R | 16347374..16347528 | 204..358 | 100 | <- | Plus |
| 3R | 16347096..16347280 | 19..203 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:04:59 Download gff for
BO12301.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12172818..12173002 | 19..203 | 100 | <- | Plus |
| arm_3R | 12173096..12173250 | 204..358 | 100 | <- | Plus |
| arm_3R | 12174503..12174606 | 359..462 | 100 | | Plus |
BO12301.5prime Sequence
476 bp (475 high quality bases) assembled on 2006-04-20
> BO12301.5prime
GAAGTTATCAGTCGACATGCCTGATGTGAAGTTCTTTGCCGTGCTGCCCA
CCAATGCCAGTACCTCGGATCGAGTAACCCGGCTGTCCATCAGCGGCAAC
CTGCTCCAGGATCCCCAGCAATTCTCGGTGAACTTTGTCAACAGTCCGGA
CTGCACGGACAACATCACATACCACTTCAAGGTGGTGATTCCCACACAGA
CGATTATCGAGAATTATAAGCGGAACGGCGAGTGGAGCAGCCTGCACCAG
GAGAAGTACCTGAACATCTTCGACGAGTCCTCCTTTTGCCTTGAGTTCGC
CTTCGACTACGCAAATTCAATGATGCGGGTGTACCAGGGTAGGGATTCGG
GCCACAATTTCATAACCGAGTACGAGACTCTCTTCTCCCTGTCCGACATC
CAGGCTGTACAGGTGTGGGGCGATGTACAGAAGGTCAACCAGTTTGCCCT
AAGCTACAACGCAAGCTTTCTAGACC
BO12301.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14879-PB | 447 | CG14879-RB | 1..444 | 17..460 | 2220 | 100 | Plus |
| CG14879-PA | 540 | CG14879-RA | 1..259 | 17..275 | 1295 | 100 | Plus |
| CG14879-PA | 540 | CG14879-RA | 352..537 | 275..460 | 930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:51:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14879-RB | 1749 | CG14879-RB | 343..786 | 17..460 | 2220 | 100 | Plus |
| CG14879-RD | 1093 | CG14879-RD | 343..601 | 17..275 | 1295 | 100 | Plus |
| CG14879-RC | 1041 | CG14879-RC | 343..601 | 17..275 | 1295 | 100 | Plus |
| CG14879-RD | 1093 | CG14879-RD | 694..879 | 275..460 | 930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:51:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16347096..16347281 | 460..275 | 930 | 100 | Minus |
| 3R | 32079331 | 3R | 16347374..16347528 | 275..121 | 775 | 100 | Minus |
| 3R | 32079331 | 3R | 16348781..16348884 | 120..17 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:51:21 has no hits.
BO12301.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:48 Download gff for
BO12301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14879-PB | 1..447 | 17..463 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:05:57 Download gff for
BO12301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14879-PB | 1..447 | 17..463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 23:29:29 Download gff for
BO12301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14879-RB | 343..786 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:27:55 Download gff for
BO12301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14879-RB | 343..786 | 17..460 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:27:55 Download gff for
BO12301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16347096..16347280 | 276..460 | 100 | <- | Minus |
| 3R | 16347374..16347528 | 121..275 | 100 | <- | Minus |
| 3R | 16348781..16348884 | 17..120 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 23:29:29 Download gff for
BO12301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12172818..12173002 | 276..460 | 100 | <- | Minus |
| arm_3R | 12173096..12173250 | 121..275 | 100 | <- | Minus |
| arm_3R | 12174503..12174606 | 17..120 | 100 | | Minus |
BO12301.complete Sequence
478 bp assembled on 2006-10-11
GenBank Submission: FJ632397
> BO12301.complete
GAAGTTATCAGTCGACATGCCTGATGTGAAGTTCTTTGCCGTGCTGCCCA
CCAATGCCAGTACCTCGGATCGAGTAACCCGGCTGTCCATCAGCGGCAAC
CTGCTCCAGGATCCCCAGCAATTCTCGGTGAACTTTGTCAACAGTCCGGA
CTGCACGGACAACATCACATACCACTTCAAGGTGGTGATTCCCACACAGA
CGATTATCGAGAATTATAAGCGGAACGGCGAGTGGAGCAGCCTGCACCAG
GAGAAGTACCTGAACATCTTCGACGAGTCCTCCTTTTGCCTTGAGTTCGC
CTTCGACTACGCAAATTCAATGATGCGGGTGTACCAGGGTAGGGATTCGG
GCCACAATTTCATAACCGAGTACGAGACTCTCTTCTCCCTGTCCGACATC
CAGGCTGTACAGGTGTGGGGCGATGTACAGAAGGTCAACCAGTTTGCCCT
AAGCTACAACGCAAGCTTTCTAGACCAT
BO12301.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:51:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14879-RB | 447 | CG14879-PB | 1..444 | 17..460 | 2220 | 100 | Plus |
| CG14879-RD | 540 | CG14879-PD | 1..259 | 17..275 | 1295 | 100 | Plus |
| CG14879-RC | 540 | CG14879-PC | 1..259 | 17..275 | 1295 | 100 | Plus |
| CG14879-RD | 540 | CG14879-PD | 352..537 | 275..460 | 930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:51:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14879-RB | 1749 | CG14879-RB | 343..786 | 17..460 | 2220 | 100 | Plus |
| CG14879-RD | 1093 | CG14879-RD | 343..601 | 17..275 | 1295 | 100 | Plus |
| CG14879-RC | 1041 | CG14879-RC | 343..601 | 17..275 | 1295 | 100 | Plus |
| CG14879-RD | 1093 | CG14879-RD | 694..879 | 275..460 | 930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:51:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16347096..16347281 | 460..275 | 930 | 100 | Minus |
| 3R | 32079331 | 3R | 16347374..16347528 | 275..121 | 775 | 100 | Minus |
| 3R | 32079331 | 3R | 16348781..16348884 | 120..17 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:51:06 has no hits.
BO12301.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:42 Download gff for
BO12301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14879-RB | 1..447 | 17..463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:00:25 Download gff for
BO12301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14879-RB | 341..784 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:33:59 Download gff for
BO12301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14879-RB | 343..786 | 17..462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:42 Download gff for
BO12301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14879-RB | 341..784 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:55 Download gff for
BO12301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14879-RB | 343..786 | 17..462 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:55 Download gff for
BO12301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16347093..16347280 | 276..462 | 98 | <- | Minus |
| 3R | 16347374..16347528 | 121..275 | 100 | <- | Minus |
| 3R | 16348781..16348884 | 17..120 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:33:59 Download gff for
BO12301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12172815..12173002 | 276..462 | 98 | <- | Minus |
| arm_3R | 12173096..12173250 | 121..275 | 100 | <- | Minus |
| arm_3R | 12174503..12174606 | 17..120 | 100 | | Minus |
BO12301.pep Sequence
Translation from 16 to 478
> BO12301.pep
MPDVKFFAVLPTNASTSDRVTRLSISGNLLQDPQQFSVNFVNSPDCTDNI
TYHFKVVIPTQTIIENYKRNGEWSSLHQEKYLNIFDESSFCLEFAFDYAN
SMMRVYQGRDSGHNFITEYETLFSLSDIQAVQVWGDVQKVNQFALSYNAS
FLDH
BO12301.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14879-PB | 148 | CG14879-PB | 1..148 | 1..148 | 781 | 100 | Plus |
| CG14879-PD | 179 | CG14879-PD | 1..179 | 1..148 | 739 | 82.7 | Plus |
| CG14879-PC | 179 | CG14879-PC | 1..179 | 1..148 | 739 | 82.7 | Plus |
| CG14879-PA | 179 | CG14879-PA | 1..179 | 1..148 | 739 | 82.7 | Plus |
