Clone Sequence Records
BO12302.3prime Sequence
851 bp (766 high quality bases) assembled on 2006-04-20
> BO12302.3prime
ATGGTCTAGAAAGCTTGCTAAAACGAAGGTGTCGTAATAGTCGACATCGT
GACCGGAGACAAAGGATATCTCCTCCAGAATGTTGATCAGCTTGAGTGTG
GCCTGGCAGGGCTTGATTCTCGGCAGCTGGAGCAACTGCTTCGTGGCTAT
CAGATCAGCGGGAGTGATCCGATTGCCGTTCACATCGCACTGTCCCTCGT
GGGTGTCCATCAGACCGGGCGAGAAGCTGAGCACATGGACACCGAAACGA
TACTCCTCGGCGGCCATGGCGCGGAAGTACATATCCCTGGCCCGTTTGCA
CGAGCAAAGCAGACCAGCATGGACCAATGGACGTACCATCAGCGATGAGG
TCACATTCACCGCCAGCTTCTCCACTCGCTCCAAGTGCTTCGATTGCAGC
CACGTCTGATTGAGCGCCACCGGAGCATAGAGCTGCTGCTGGACATAGGC
CTTCCAATCGTCGTCGCTCTGGGGTTCCAGGAGCATATGCGTGGCCGCCT
TTCCCTCGTTGTGAAGGATTATGGAACGCTCGAAGCGTTGATTGTCCTTA
TCCGCCATGAAATTATCCATCAATGCCTGTTCCATTAGCTGCACACCATT
CGAGTGATCTTTGTCCAACTTTCCGATTGTCACCTTAACGTTCTCCGTCT
TCAGTTCGCTCCGGAGATGATTCTCCAGCTCCCGAAGCTGCTCCTGATCC
TCATCCAAGATCAAAGCAAGGGATCCAGTGGCCAGGCGACGGCAGAACTC
CAGCGCCAGGGATTGACCCCAAGGATTTGAGCTGCCGCTCAACACCAAAA
AGGTGCGTCTATTTAAATCCATTCTCTTTGCTGCCATGTCGACTGATAAC
T
BO12302.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12116-PA | 822 | CG12116-RA | 1..819 | 837..19 | 4070 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:55:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12116-RA | 1570 | CG12116-RA | 259..1077 | 837..19 | 4080 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:55:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8467936..8468754 | 19..837 | 4080 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-01 04:55:29 has no hits.
BO12302.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:49 Download gff for
BO12302.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12116-PA | 1..822 | 16..837 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:05:59 Download gff for
BO12302.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12116-PA | 1..822 | 16..837 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:09:48 Download gff for
BO12302.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12116-RA | 259..1077 | 19..837 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:50:36 Download gff for
BO12302.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12116-RA | 259..1077 | 19..837 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:50:36 Download gff for
BO12302.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8467936..8468754 | 19..837 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:09:48 Download gff for
BO12302.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8361969..8362787 | 19..837 | 99 | | Plus |
BO12302.5prime Sequence
851 bp (770 high quality bases) assembled on 2006-04-20
> BO12302.5prime
GAAGTTATCAGTCGACATGGCAGCAAAGAGAATGGATTTAAATAGACGCA
CCTTTTTGGTGTTGAGCGGCAGCTCAAATCCTTTGGGTCAATCCCTGGCG
CTGGAGTTCTGCCGTCGCCTGGCCACTGGATCCCTTGCTTTGATCTTGGA
TGAGGATCAGGAGCAGCTTCGGGAGCTGGAGAATCATCTCCGGAGCGAAC
TGAAGACGGAGAACGTTAAGGTGACAATCGGAAAGTTGGACAAAGATCAC
TCGAATGGTGTGCAGCTAATGGAACAGGCATTGATGGATAATTTCATGGC
GGATAAGGACAATCAACGCTTCGAGCGTTCCATAATCCTTCACAACGAGG
GAAAGGCGGCCACGCATATGCTCCTGGAACCCCAGAGCGACGACGATTGG
AAGGCCTATGTCCAGCAGCAGCTCTATGCTCCGGTGGCGCTCAATCAGAC
GTGGCTGCAATCGAAGCACTTGGAGCGAGTGGAGAAGCTGGCGGTGAATG
TGACCTCATCGCTGATGGTACGTCCATTGGTCCATGCTGGTCTGCTTTGC
TCGTGCAAACGGGCCAGGGATATGTACTTCCGCGCCATGGCCGCCGAGGA
GTATCGTTTCGGTGTCCATGTGCTCAGCTTCTCGCCCGGTCTGATGGACA
CCCACGAGGGACAGTGCGATGTGAACGGCAATCGGATCACTCCCGCTGAT
CTGATAGCCACGAAGCAGTTGCTCCAGCTGCCGAGAATCAAGCCCTGCCA
GGCCACACTCAAGCTGATCAACATTCTGGAGGAGATATCCTTTGTCTCCG
GTCACGATGTCGACTATTACGACACCTTCGTTTTAGCAAGCTTTCTAGAC
C
BO12302.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12116-PA | 822 | CG12116-RA | 1..819 | 17..835 | 4095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:44:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12116-RA | 1570 | CG12116-RA | 259..1077 | 17..835 | 4095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:44:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8467936..8468754 | 835..17 | 4095 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:44:44 has no hits.
BO12302.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:50 Download gff for
BO12302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12116-PA | 1..822 | 17..838 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:01 Download gff for
BO12302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12116-PA | 1..822 | 17..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:41:48 Download gff for
BO12302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12116-RA | 259..1077 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:38:12 Download gff for
BO12302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12116-RA | 259..1077 | 17..835 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:38:12 Download gff for
BO12302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8467936..8468754 | 17..835 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:41:48 Download gff for
BO12302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8361969..8362787 | 17..835 | 100 | | Minus |
BO12302.complete Sequence
853 bp assembled on 2006-10-11
GenBank Submission: FJ632398
> BO12302.complete
GAAGTTATCAGTCGACATGGCAGCAAAGAGAATGGATTTAAATAGACGCA
CCTTTTTGGTGTTGAGCGGCAGCTCAAATCCTTTGGGTCAATCCCTGGCG
CTGGAGTTCTGCCGTCGCCTGGCCACTGGATCCCTTGCTTTGATCTTGGA
TGAGGATCAGGAGCAGCTTCGGGAGCTGGAGAATCATCTCCGGAGCGAAC
TGAAGACGGAGAACGTTAAGGTGACAATCGGAAAGTTGGACAAAGATCAC
TCGAATGGTGTGCAGCTAATGGAACAGGCATTGATGGATAATTTCATGGC
GGATAAGGACAATCAACGCTTCGAGCGTTCCATAATCCTTCACAACGAGG
GAAAGGCGGCCACGCATATGCTCCTGGAACCCCAGAGCGACGACGATTGG
AAGGCCTATGTCCAGCAGCAGCTCTATGCTCCGGTGGCGCTCAATCAGAC
GTGGCTGCAATCGAAGCACTTGGAGCGAGTGGAGAAGCTGGCGGTGAATG
TGACCTCATCGCTGATGGTACGTCCATTGGTCCATGCTGGTCTGCTTTGC
TCGTGCAAACGGGCCAGGGATATGTACTTCCGCGCCATGGCCGCCGAGGA
GTATCGTTTCGGTGTCCATGTGCTCAGCTTCTCGCCCGGTCTGATGGACA
CCCACGAGGGACAGTGCGATGTGAACGGCAATCGGATCACTCCCGCTGAT
CTGATAGCCACGAAGCAGTTGCTCCAGCTGCCGAGAATCAAGCCCTGCCA
GGCCACACTCAAGCTGATCAACATTCTGGAGGAGATATCCTTTGTCTCCG
GTCACGATGTCGACTATTACGACACCTTCGTTTTAGCAAGCTTTCTAGAC
CAT
BO12302.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:13:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12116-RA | 822 | CG12116-PA | 1..819 | 17..835 | 4095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:13:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12116-RA | 1570 | CG12116-RA | 259..1077 | 17..835 | 4095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:13:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8467936..8468754 | 835..17 | 4095 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:13:56 has no hits.
BO12302.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:43 Download gff for
BO12302.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12116-RA | 1..822 | 17..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:12 Download gff for
BO12302.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12116-RA | 254..1072 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:20:27 Download gff for
BO12302.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12116-RA | 259..1077 | 17..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:43 Download gff for
BO12302.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12116-RA | 254..1072 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:18 Download gff for
BO12302.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12116-RA | 259..1077 | 17..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:18 Download gff for
BO12302.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8467933..8468754 | 17..837 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:20:27 Download gff for
BO12302.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8361966..8362787 | 17..837 | 99 | | Minus |
BO12302.pep Sequence
Translation from 16 to 853
> BO12302.pep
MAAKRMDLNRRTFLVLSGSSNPLGQSLALEFCRRLATGSLALILDEDQEQ
LRELENHLRSELKTENVKVTIGKLDKDHSNGVQLMEQALMDNFMADKDNQ
RFERSIILHNEGKAATHMLLEPQSDDDWKAYVQQQLYAPVALNQTWLQSK
HLERVEKLAVNVTSSLMVRPLVHAGLLCSCKRARDMYFRAMAAEEYRFGV
HVLSFSPGLMDTHEGQCDVNGNRITPADLIATKQLLQLPRIKPCQATLKL
INILEEISFVSGHDVDYYDTFVLASFLDH
BO12302.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12116-PA | 273 | CG12116-PA | 1..273 | 1..273 | 1400 | 100 | Plus |
| Sptr-PA | 261 | CG12117-PA | 1..258 | 6..269 | 252 | 28 | Plus |
