Clone BO12305 Report

Search the DGRC for BO12305

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:123
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptCG8207-RA
Protein status:BO12305.pep: validated full length
Sequenced Size:1348

Clone Sequence Records

BO12305.3prime Sequence

850 bp (786 high quality bases) assembled on 2006-04-20

> BO12305.3prime
ATGGTCTAGAAAGCTTGCCAAGATGATCTCGTTTTTGAAGCTGCGACTGA
GCTCCTTGTGCGGCAGTACAATGCTGTTCAGCAGGATTTTCTCGGCGGGC
ACCTGCACGAAACAGCCCAGTATGGTTATCGAGGGGTTTAGCTTGCCCTC
GTTGTTGAAAAGCGGTGGGTTCTCCATTTTGGCAAAGGGTTTGTTGGGAT
CGGGATCACTAGGTGTGCCCTCGACTCGAGCCCAAGCTCCAATGGTGGAG
CCCCTGCCCACAATAGAGTGCAGCACGAGCGTATGGTCCAGGATCTGTGC
CTGCTCCAAAACAATCGATTCGCGAATGCGCACACCTGGTCCAATTGTCA
CTCCAGGTCCAATCGCCACATTGGGTCCCAGCACTGCGCTGTGATGGACA
GTGGCACTGGGATGCACATAGACGTCCGGATGCACTGTGCAGATCAAGCT
GCCGTCCCCTTCTCCGCGCTTGATCCCCACATTGGCCAATCTCTCGGGAT
GCGTTTTCTTGTACAGGCCAAGATAATGACGATTTGCGTAGATTGCCGAC
CCAGCAGTCTTCAGTTGGGACCACCAGTTAGGCACTGGCATGGCAAAGAG
TTTATCGGTTCCAGCCAGGGGCGTAAGCACCTCCTGTTCCCACTTGATGT
GCCCCTGCTCTCGTCCATTTCCATTTCCGTTTCCATTGCAAAATGCCTGG
CAGCTGTACTCCTGACCTCTCGAATGAAAAATCTGTGCCAACACCGTGAA
TATATCCATGGAACAGACATACACCCCACAGTTGATAAATGTGGACACAT
AGGAGCTAGGCTTTTCTACATAATGCGAAACGGCTCCGCTACTCCGATCG

BO12305.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG8207-PA 1317 CG8207-RA 483..1314 850..19 4160 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8207-RA 1562 CG8207-RA 612..1443 850..19 4160 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15677812..15678280 382..850 2345 100 Plus
2R 25286936 2R 15677488..15677754 116..382 1335 100 Plus
2R 25286936 2R 15677337..15677435 19..117 495 100 Plus
Blast to na_te.dros performed on 2015-02-12 03:54:07 has no hits.

BO12305.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:55 Download gff for BO12305.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8207-PA 483..1317 16..850 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:08 Download gff for BO12305.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8207-PA 483..1317 16..850 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:55:55 Download gff for BO12305.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8207-RA 612..1443 19..850 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:13 Download gff for BO12305.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8207-RA 612..1443 19..850 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:13 Download gff for BO12305.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15677337..15677434 19..116 100 <- Plus
2R 15677489..15677753 117..381 100 <- Plus
2R 15677812..15678280 382..850 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:55:55 Download gff for BO12305.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11564842..11564939 19..116 100 <- Plus
arm_2R 11564994..11565258 117..381 100 <- Plus
arm_2R 11565317..11565785 382..850 100   Plus

BO12305.5prime Sequence

883 bp (862 high quality bases) assembled on 2006-04-20

> BO12305.5prime
GAAGTTATCAGTCGACATGCTAAAGGCCGTTATCCTGATCGGCGGTCCCC
AGAAGGGCACCCGCTTTCGCCCCCTTTCGCTTGACACGCCCAAGCCGCTC
TTTCCATTGGCCGGTCGTCCTCTAATCGCCCATCATATTGAGGCCTGCGC
CCAGCTGCCCGATATACGCGAGATCCTGATCATCGGCTATTATCCGCAGA
CCCAAATGGAGGGATTCGTGGGCGACATGCAGGCCCTGTACAGCAGCAGC
AACATCAACATCAGGTACCTTCAGGAGTTCACTGCCTTGGGCACTGCAGG
CGGAATGTACCATTTCCGGGATCAGATTAGAGCTGGTAACCCCCGAGCCT
TCTTCGTATTGAACGGAGATGTTTGCGCTGATTTTCCGCTGCAAGAACTG
TGCGACTTTCACGAGAAGCGCCCGGCGAGTGCTCTGGTTACTATCATGTC
CACGGAGGCGACACGTCAGCAATCCTTGCACTACGGCTGTCTGGTTTTCG
ATCGGAGTAGCGGAGCCGTTTCGCATTATGTAGAAAAGCCTAGCTCCTAT
GTGTCCACATTTATCAACTGTGGGGTGTATGTCTGTTCCATGGATATATT
CACGGTGTTGGCACAGATTTTTCATTCGAGAGGTCAGGAGTACAGCTGCC
AGGCATTTTGCAATGGAAACGGAAATGGAAATGGACGAGAGCAGGGGCAC
ATCAAGTGGGAACAGGAGGTGCTTACGCCCCTGGCTGGAACCGATAAACT
CTTTGCCATGCCAGTGCCTAACTGGTGGTCCCAACTGAAGACTGCTGGGT
CGGCAATCTACGCAAATCGTCATTATCTTGGCCTGTACAAGAAAACGCAT
CCCGAGAGATTGGCCAATGTGGGGATCAAGCGC

BO12305.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG8207-PA 1317 CG8207-RA 1..867 17..883 4335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8207-RA 1562 CG8207-RA 129..996 16..883 4340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15677896..15678516 883..263 3105 100 Minus
2R 25286936 2R 15678578..15678828 266..16 1255 100 Minus
Blast to na_te.dros performed 2015-02-11 17:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
TART-C 11124 TART-C TARTC 11124bp 9175..9216 234..276 122 79.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2457..2488 241..273 108 84.8 Plus

BO12305.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:56 Download gff for BO12305.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8207-PA 1..867 17..883 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:09 Download gff for BO12305.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8207-PA 1..867 17..883 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:09:27 Download gff for BO12305.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8207-RA 124..996 9..883 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:03:38 Download gff for BO12305.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8207-RA 124..996 9..883 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:03:38 Download gff for BO12305.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15677896..15678514 265..883 100 <- Minus
2R 15678580..15678831 9..264 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:09:27 Download gff for BO12305.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11565401..11566019 265..883 100 <- Minus
arm_2R 11566085..11566336 9..264 98   Minus

BO12305.complete Sequence

1348 bp assembled on 2006-10-11

GenBank Submission: FJ632399

> BO12305.complete
GAAGTTATCAGTCGACATGCTAAAGGCCGTTATCCTGATCGGCGGTCCCC
AGAAGGGCACCCGCTTTCGCCCCCTTTCGCTTGACACGCCCAAGCCGCTC
TTTCCATTGGCCGGTCGTCCTCTAATCGCCCATCATATTGAGGCCTGCGC
CCAGCTGCCCGATATACGCGAGATCCTGATCATCGGCTATTATCCGCAGA
CCCAAATGGAGGGATTCGTGGGCGACATGCAGGCCCTGTACAGCAGCAGC
AACATCAACATCAGGTACCTTCAGGAGTTCACTGCCTTGGGCACTGCAGG
CGGAATGTACCATTTCCGGGATCAGATTAGAGCTGGTAACCCCCGAGCCT
TCTTCGTATTGAACGGAGATGTTTGCGCTGATTTTCCGCTGCAAGAACTG
TGCGACTTTCACGAGAAGCGCCCGGCGAGTGCTCTGGTTACTATCATGTC
CACGGAGGCGACACGTCAGCAATCCTTGCACTACGGCTGTCTGGTTTTCG
ATCGGAGTAGCGGAGCCGTTTCGCATTATGTAGAAAAGCCTAGCTCCTAT
GTGTCCACATTTATCAACTGTGGGGTGTATGTCTGTTCCATGGATATATT
CACGGTGTTGGCACAGATTTTTCATTCGAGAGGTCAGGAGTACAGCTGCC
AGGCATTTTGCAATGGAAACGGAAATGGAAATGGACGAGAGCAGGGGCAC
ATCAAGTGGGAACAGGAGGTGCTTACGCCCCTGGCTGGAACCGATAAACT
CTTTGCCATGCCAGTGCCTAACTGGTGGTCCCAACTGAAGACTGCTGGGT
CGGCAATCTACGCAAATCGTCATTATCTTGGCCTGTACAAGAAAACGCAT
CCCGAGAGATTGGCCAATGTGGGGATCAAGCGCGGAGAAGGGGACGGCAG
CTTGATCTGCACAGTGCATCCGGACGTCTATGTGCATCCCAGTGCCACTG
TCCATCACAGCGCAGTGCTGGGACCCAATGTGGCGATTGGACCTGGAGTG
ACAATTGGACCAGGTGTGCGCATTCGCGAATCGATTGTTTTGGAGCAGGC
ACAGATCCTGGACCATACGCTCGTGCTGCACTCTATTGTGGGCAGGGGCT
CCACCATTGGAGCTTGGGCTCGAGTCGAGGGCACACCTAGTGATCCCGAT
CCCAACAAACCCTTTGCCAAAATGGAGAACCCACCGCTTTTCAACAACGA
GGGCAAGCTAAACCCCTCGATAACCATACTGGGCTGTTTCGTGCAGGTGC
CCGCCGAGAAAATCCTGCTGAACAGCATTGTACTGCCGCACAAGGAGCTC
AGTCGCAGCTTCAAAAACGAGATCATCTTGGCAAGCTTTCTAGACCAT

BO12305.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG8207-RA 1317 CG8207-PA 1..1314 17..1330 6570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG8207-RA 1562 CG8207-RA 129..1443 16..1330 6575 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15677812..15678516 967..263 3525 100 Minus
2R 25286936 2R 15677488..15677754 1233..967 1335 100 Minus
2R 25286936 2R 15678578..15678828 266..16 1255 100 Minus
2R 25286936 2R 15677337..15677435 1330..1232 495 100 Minus
Blast to na_te.dros performed 2014-11-26 14:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
TART-C 11124 TART-C TARTC 11124bp 9175..9216 234..276 122 79.1 Plus

BO12305.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:44 Download gff for BO12305.complete
Subject Subject Range Query Range Percent Splice Strand
CG8207-RA 1..1317 17..1333 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:14 Download gff for BO12305.complete
Subject Subject Range Query Range Percent Splice Strand
CG8207-RA 107..1426 9..1330 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:42:43 Download gff for BO12305.complete
Subject Subject Range Query Range Percent Splice Strand
CG8207-RA 130..1443 17..1332 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:44 Download gff for BO12305.complete
Subject Subject Range Query Range Percent Splice Strand
CG8207-RA 107..1426 9..1330 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:17 Download gff for BO12305.complete
Subject Subject Range Query Range Percent Splice Strand
CG8207-RA 130..1443 17..1332 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:17 Download gff for BO12305.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15677334..15677434 1233..1332 98 <- Minus
2R 15677489..15677753 968..1232 100 <- Minus
2R 15677812..15678514 265..967 100 <- Minus
2R 15678580..15678827 17..264 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:42:43 Download gff for BO12305.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11564839..11564939 1233..1332 98 <- Minus
arm_2R 11564994..11565258 968..1232 100 <- Minus
arm_2R 11565317..11566019 265..967 100 <- Minus
arm_2R 11566085..11566332 17..264 100   Minus

BO12305.pep Sequence

Translation from 16 to 1348

> BO12305.pep
MLKAVILIGGPQKGTRFRPLSLDTPKPLFPLAGRPLIAHHIEACAQLPDI
REILIIGYYPQTQMEGFVGDMQALYSSSNINIRYLQEFTALGTAGGMYHF
RDQIRAGNPRAFFVLNGDVCADFPLQELCDFHEKRPASALVTIMSTEATR
QQSLHYGCLVFDRSSGAVSHYVEKPSSYVSTFINCGVYVCSMDIFTVLAQ
IFHSRGQEYSCQAFCNGNGNGNGREQGHIKWEQEVLTPLAGTDKLFAMPV
PNWWSQLKTAGSAIYANRHYLGLYKKTHPERLANVGIKRGEGDGSLICTV
HPDVYVHPSATVHHSAVLGPNVAIGPGVTIGPGVRIRESIVLEQAQILDH
TLVLHSIVGRGSTIGAWARVEGTPSDPDPNKPFAKMENPPLFNNEGKLNP
SITILGCFVQVPAEKILLNSIVLPHKELSRSFKNEIILASFLDH

BO12305.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG8207-PA 438 CG8207-PA 1..438 1..438 2324 100 Plus
CG1129-PE 369 CG1129-PE 12..361 3..431 386 27.9 Plus
CG1129-PD 369 CG1129-PD 12..361 3..431 386 27.9 Plus
CG1129-PA 369 CG1129-PA 12..361 3..431 386 27.9 Plus
CG1129-PB 369 CG1129-PB 12..361 3..431 386 27.9 Plus