Clone Sequence Records
BO12305.3prime Sequence
850 bp (786 high quality bases) assembled on 2006-04-20
> BO12305.3prime
ATGGTCTAGAAAGCTTGCCAAGATGATCTCGTTTTTGAAGCTGCGACTGA
GCTCCTTGTGCGGCAGTACAATGCTGTTCAGCAGGATTTTCTCGGCGGGC
ACCTGCACGAAACAGCCCAGTATGGTTATCGAGGGGTTTAGCTTGCCCTC
GTTGTTGAAAAGCGGTGGGTTCTCCATTTTGGCAAAGGGTTTGTTGGGAT
CGGGATCACTAGGTGTGCCCTCGACTCGAGCCCAAGCTCCAATGGTGGAG
CCCCTGCCCACAATAGAGTGCAGCACGAGCGTATGGTCCAGGATCTGTGC
CTGCTCCAAAACAATCGATTCGCGAATGCGCACACCTGGTCCAATTGTCA
CTCCAGGTCCAATCGCCACATTGGGTCCCAGCACTGCGCTGTGATGGACA
GTGGCACTGGGATGCACATAGACGTCCGGATGCACTGTGCAGATCAAGCT
GCCGTCCCCTTCTCCGCGCTTGATCCCCACATTGGCCAATCTCTCGGGAT
GCGTTTTCTTGTACAGGCCAAGATAATGACGATTTGCGTAGATTGCCGAC
CCAGCAGTCTTCAGTTGGGACCACCAGTTAGGCACTGGCATGGCAAAGAG
TTTATCGGTTCCAGCCAGGGGCGTAAGCACCTCCTGTTCCCACTTGATGT
GCCCCTGCTCTCGTCCATTTCCATTTCCGTTTCCATTGCAAAATGCCTGG
CAGCTGTACTCCTGACCTCTCGAATGAAAAATCTGTGCCAACACCGTGAA
TATATCCATGGAACAGACATACACCCCACAGTTGATAAATGTGGACACAT
AGGAGCTAGGCTTTTCTACATAATGCGAAACGGCTCCGCTACTCCGATCG
BO12305.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8207-PA | 1317 | CG8207-RA | 483..1314 | 850..19 | 4160 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:54:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8207-RA | 1562 | CG8207-RA | 612..1443 | 850..19 | 4160 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:54:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15677812..15678280 | 382..850 | 2345 | 100 | Plus |
2R | 25286936 | 2R | 15677488..15677754 | 116..382 | 1335 | 100 | Plus |
2R | 25286936 | 2R | 15677337..15677435 | 19..117 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:54:07 has no hits.
BO12305.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:55 Download gff for
BO12305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8207-PA | 483..1317 | 16..850 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:08 Download gff for
BO12305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8207-PA | 483..1317 | 16..850 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:55:55 Download gff for
BO12305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8207-RA | 612..1443 | 19..850 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:13 Download gff for
BO12305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8207-RA | 612..1443 | 19..850 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:13 Download gff for
BO12305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15677337..15677434 | 19..116 | 100 | <- | Plus |
2R | 15677489..15677753 | 117..381 | 100 | <- | Plus |
2R | 15677812..15678280 | 382..850 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:55:55 Download gff for
BO12305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11564842..11564939 | 19..116 | 100 | <- | Plus |
arm_2R | 11564994..11565258 | 117..381 | 100 | <- | Plus |
arm_2R | 11565317..11565785 | 382..850 | 100 | | Plus |
BO12305.5prime Sequence
883 bp (862 high quality bases) assembled on 2006-04-20
> BO12305.5prime
GAAGTTATCAGTCGACATGCTAAAGGCCGTTATCCTGATCGGCGGTCCCC
AGAAGGGCACCCGCTTTCGCCCCCTTTCGCTTGACACGCCCAAGCCGCTC
TTTCCATTGGCCGGTCGTCCTCTAATCGCCCATCATATTGAGGCCTGCGC
CCAGCTGCCCGATATACGCGAGATCCTGATCATCGGCTATTATCCGCAGA
CCCAAATGGAGGGATTCGTGGGCGACATGCAGGCCCTGTACAGCAGCAGC
AACATCAACATCAGGTACCTTCAGGAGTTCACTGCCTTGGGCACTGCAGG
CGGAATGTACCATTTCCGGGATCAGATTAGAGCTGGTAACCCCCGAGCCT
TCTTCGTATTGAACGGAGATGTTTGCGCTGATTTTCCGCTGCAAGAACTG
TGCGACTTTCACGAGAAGCGCCCGGCGAGTGCTCTGGTTACTATCATGTC
CACGGAGGCGACACGTCAGCAATCCTTGCACTACGGCTGTCTGGTTTTCG
ATCGGAGTAGCGGAGCCGTTTCGCATTATGTAGAAAAGCCTAGCTCCTAT
GTGTCCACATTTATCAACTGTGGGGTGTATGTCTGTTCCATGGATATATT
CACGGTGTTGGCACAGATTTTTCATTCGAGAGGTCAGGAGTACAGCTGCC
AGGCATTTTGCAATGGAAACGGAAATGGAAATGGACGAGAGCAGGGGCAC
ATCAAGTGGGAACAGGAGGTGCTTACGCCCCTGGCTGGAACCGATAAACT
CTTTGCCATGCCAGTGCCTAACTGGTGGTCCCAACTGAAGACTGCTGGGT
CGGCAATCTACGCAAATCGTCATTATCTTGGCCTGTACAAGAAAACGCAT
CCCGAGAGATTGGCCAATGTGGGGATCAAGCGC
BO12305.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8207-PA | 1317 | CG8207-RA | 1..867 | 17..883 | 4335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:03:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8207-RA | 1562 | CG8207-RA | 129..996 | 16..883 | 4340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:03:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15677896..15678516 | 883..263 | 3105 | 100 | Minus |
2R | 25286936 | 2R | 15678578..15678828 | 266..16 | 1255 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 17:03:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-C | 11124 | TART-C TARTC 11124bp | 9175..9216 | 234..276 | 122 | 79.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2457..2488 | 241..273 | 108 | 84.8 | Plus |
BO12305.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:56 Download gff for
BO12305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8207-PA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:09 Download gff for
BO12305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8207-PA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:09:27 Download gff for
BO12305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8207-RA | 124..996 | 9..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:03:38 Download gff for
BO12305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8207-RA | 124..996 | 9..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:03:38 Download gff for
BO12305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15677896..15678514 | 265..883 | 100 | <- | Minus |
2R | 15678580..15678831 | 9..264 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:09:27 Download gff for
BO12305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11565401..11566019 | 265..883 | 100 | <- | Minus |
arm_2R | 11566085..11566336 | 9..264 | 98 | | Minus |
BO12305.complete Sequence
1348 bp assembled on 2006-10-11
GenBank Submission: FJ632399
> BO12305.complete
GAAGTTATCAGTCGACATGCTAAAGGCCGTTATCCTGATCGGCGGTCCCC
AGAAGGGCACCCGCTTTCGCCCCCTTTCGCTTGACACGCCCAAGCCGCTC
TTTCCATTGGCCGGTCGTCCTCTAATCGCCCATCATATTGAGGCCTGCGC
CCAGCTGCCCGATATACGCGAGATCCTGATCATCGGCTATTATCCGCAGA
CCCAAATGGAGGGATTCGTGGGCGACATGCAGGCCCTGTACAGCAGCAGC
AACATCAACATCAGGTACCTTCAGGAGTTCACTGCCTTGGGCACTGCAGG
CGGAATGTACCATTTCCGGGATCAGATTAGAGCTGGTAACCCCCGAGCCT
TCTTCGTATTGAACGGAGATGTTTGCGCTGATTTTCCGCTGCAAGAACTG
TGCGACTTTCACGAGAAGCGCCCGGCGAGTGCTCTGGTTACTATCATGTC
CACGGAGGCGACACGTCAGCAATCCTTGCACTACGGCTGTCTGGTTTTCG
ATCGGAGTAGCGGAGCCGTTTCGCATTATGTAGAAAAGCCTAGCTCCTAT
GTGTCCACATTTATCAACTGTGGGGTGTATGTCTGTTCCATGGATATATT
CACGGTGTTGGCACAGATTTTTCATTCGAGAGGTCAGGAGTACAGCTGCC
AGGCATTTTGCAATGGAAACGGAAATGGAAATGGACGAGAGCAGGGGCAC
ATCAAGTGGGAACAGGAGGTGCTTACGCCCCTGGCTGGAACCGATAAACT
CTTTGCCATGCCAGTGCCTAACTGGTGGTCCCAACTGAAGACTGCTGGGT
CGGCAATCTACGCAAATCGTCATTATCTTGGCCTGTACAAGAAAACGCAT
CCCGAGAGATTGGCCAATGTGGGGATCAAGCGCGGAGAAGGGGACGGCAG
CTTGATCTGCACAGTGCATCCGGACGTCTATGTGCATCCCAGTGCCACTG
TCCATCACAGCGCAGTGCTGGGACCCAATGTGGCGATTGGACCTGGAGTG
ACAATTGGACCAGGTGTGCGCATTCGCGAATCGATTGTTTTGGAGCAGGC
ACAGATCCTGGACCATACGCTCGTGCTGCACTCTATTGTGGGCAGGGGCT
CCACCATTGGAGCTTGGGCTCGAGTCGAGGGCACACCTAGTGATCCCGAT
CCCAACAAACCCTTTGCCAAAATGGAGAACCCACCGCTTTTCAACAACGA
GGGCAAGCTAAACCCCTCGATAACCATACTGGGCTGTTTCGTGCAGGTGC
CCGCCGAGAAAATCCTGCTGAACAGCATTGTACTGCCGCACAAGGAGCTC
AGTCGCAGCTTCAAAAACGAGATCATCTTGGCAAGCTTTCTAGACCAT
BO12305.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:47:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8207-RA | 1317 | CG8207-PA | 1..1314 | 17..1330 | 6570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:47:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8207-RA | 1562 | CG8207-RA | 129..1443 | 16..1330 | 6575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:47:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15677812..15678516 | 967..263 | 3525 | 100 | Minus |
2R | 25286936 | 2R | 15677488..15677754 | 1233..967 | 1335 | 100 | Minus |
2R | 25286936 | 2R | 15678578..15678828 | 266..16 | 1255 | 100 | Minus |
2R | 25286936 | 2R | 15677337..15677435 | 1330..1232 | 495 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 14:47:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-C | 11124 | TART-C TARTC 11124bp | 9175..9216 | 234..276 | 122 | 79.1 | Plus |
BO12305.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:44 Download gff for
BO12305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8207-RA | 1..1317 | 17..1333 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:14 Download gff for
BO12305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8207-RA | 107..1426 | 9..1330 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:42:43 Download gff for
BO12305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8207-RA | 130..1443 | 17..1332 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:44 Download gff for
BO12305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8207-RA | 107..1426 | 9..1330 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:17 Download gff for
BO12305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8207-RA | 130..1443 | 17..1332 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:17 Download gff for
BO12305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15677334..15677434 | 1233..1332 | 98 | <- | Minus |
2R | 15677489..15677753 | 968..1232 | 100 | <- | Minus |
2R | 15677812..15678514 | 265..967 | 100 | <- | Minus |
2R | 15678580..15678827 | 17..264 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:42:43 Download gff for
BO12305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11564839..11564939 | 1233..1332 | 98 | <- | Minus |
arm_2R | 11564994..11565258 | 968..1232 | 100 | <- | Minus |
arm_2R | 11565317..11566019 | 265..967 | 100 | <- | Minus |
arm_2R | 11566085..11566332 | 17..264 | 100 | | Minus |
BO12305.pep Sequence
Translation from 16 to 1348
> BO12305.pep
MLKAVILIGGPQKGTRFRPLSLDTPKPLFPLAGRPLIAHHIEACAQLPDI
REILIIGYYPQTQMEGFVGDMQALYSSSNINIRYLQEFTALGTAGGMYHF
RDQIRAGNPRAFFVLNGDVCADFPLQELCDFHEKRPASALVTIMSTEATR
QQSLHYGCLVFDRSSGAVSHYVEKPSSYVSTFINCGVYVCSMDIFTVLAQ
IFHSRGQEYSCQAFCNGNGNGNGREQGHIKWEQEVLTPLAGTDKLFAMPV
PNWWSQLKTAGSAIYANRHYLGLYKKTHPERLANVGIKRGEGDGSLICTV
HPDVYVHPSATVHHSAVLGPNVAIGPGVTIGPGVRIRESIVLEQAQILDH
TLVLHSIVGRGSTIGAWARVEGTPSDPDPNKPFAKMENPPLFNNEGKLNP
SITILGCFVQVPAEKILLNSIVLPHKELSRSFKNEIILASFLDH
BO12305.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8207-PA | 438 | CG8207-PA | 1..438 | 1..438 | 2324 | 100 | Plus |
CG1129-PE | 369 | CG1129-PE | 12..361 | 3..431 | 386 | 27.9 | Plus |
CG1129-PD | 369 | CG1129-PD | 12..361 | 3..431 | 386 | 27.9 | Plus |
CG1129-PA | 369 | CG1129-PA | 12..361 | 3..431 | 386 | 27.9 | Plus |
CG1129-PB | 369 | CG1129-PB | 12..361 | 3..431 | 386 | 27.9 | Plus |